RLG00000007400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001007
Physical Location & Seq
Reverse (-)
16476326 .. 16477937
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007400

Sequence Viewer

Length: 996 bp
ATGAGATATAATGTACTTCCGCTCGAGATTATAATGTATTTCCACTCGTCACTAAACCTTGGCCTAAAGTCTCAAGCAACTATTGAATGGAAACCTAAAGATCTTCCTCGTATGCCTCTCATAAAGCATAACATAATGGAAAGAGTTGCTAAATATTGGAGAAGCTACAAGAATAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCATACCAGGACGTTGGGTATGTAGGAATAAAGATGTCAACGCAGCTGAATGGCGAGAAATGGTCAAATATTGGGATACTGAAAAGACAACAGCAGTTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTAGCACCAAGAGTTATGCACGCAGTCGAGCAGAATATGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTTGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACGTCACAGTGTTCGCGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATAGAAGACATGATGCTCACTTGCAATCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAAGAAGAGCAAGCACAGGTGCAGCAAGTTCAAACTCAAGAACAACTCTTGCAAACCCAACGAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCACAACAATCTTCTCAGCCGTTGCAGCAACCATCCTTCCATATGCCTTCTTATCCTCCTCAAATGTACTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCACTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTAAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCGTGGATCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

332

Amino Acids

38.43

Weight (kDa)

9.3

Isoelectric Point (pI)

66.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 85 - 130 4.8e-10 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 541
AccBSI CCGCTC 1 cut(s) 22
AccII CGCG 1 cut(s) 510
AciI CCGC 3 cut(s) 20, 510, 842
AclWI GGATC 2 cut(s) 191, 994
AcsI RAATTY 1 cut(s) 316
AfaI GTAC 3 cut(s) 15, 641, 830
AfiI CCNNNNNNNGG 2 cut(s) 206, 893
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 4 cut(s) 86, 434, 554, 680
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 7 cut(s) 165, 188, 254, 567, 955, 962, 978
AluI AGCT 7 cut(s) 165, 188, 254, 567, 955, 962, 978
Alw26I GTCTC 2 cut(s) 75, 437
AlwI GGATC 2 cut(s) 191, 994
AlwNI CAGNNNCTG 1 cut(s) 308
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 2 cut(s) 61, 833
ApeKI GCWGC 3 cut(s) 251, 670, 787
ApoI RAATTY 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 1 cut(s) 485
BaeI ACNNNNGTAYC 2 cut(s) 912, 945
BanI GGYRCC 1 cut(s) 541
BauI CACGAG 1 cut(s) 981
BbsI GAAGAC 1 cut(s) 598
BbvI GCAGC 3 cut(s) 263, 682, 799
BccI CCATC 3 cut(s) 475, 554, 802
BceAI ACGGC 1 cut(s) 766
BciT130I CCWGG 1 cut(s) 216
BciVI GTATCC 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 75, 437
BfaI CTAG 2 cut(s) 357, 521
BfmI CTRYAG 1 cut(s) 447
BfrI CTTAAG 1 cut(s) 179
BfuI GTATCC 1 cut(s) 277
BglII AGATCT 2 cut(s) 100, 846
BisI GCNGC 3 cut(s) 252, 671, 788
BlsI GCNGC 3 cut(s) 253, 672, 789
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 485
BmiI GGNNCC 2 cut(s) 486, 543
BmrFI CCNGG 1 cut(s) 216
BmsI GCATC 2 cut(s) 444, 589
BpiI GAAGAC 1 cut(s) 598
BpuEI CTTGAG 2 cut(s) 57, 669
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 893
Bse1I ACTGG 3 cut(s) 836, 898, 907
Bse3DI GCAATG 1 cut(s) 726
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 794
BseLI CCNNNNNNNGG 2 cut(s) 206, 893
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 4 cut(s) 300, 480, 791, 981
BseNI ACTGG 3 cut(s) 836, 898, 907
BseRI GAGGAG 1 cut(s) 810
BseXI GCAGC 3 cut(s) 263, 682, 799
BseYI CCCAGC 1 cut(s) 744
BsgI GTGCAG 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 2 cut(s) 63, 835
BshNI GGYRCC 1 cut(s) 541
BsiHKCI CYCGRG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 2 cut(s) 206, 893
BsmAI GTCTC 2 cut(s) 75, 437
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 2 cut(s) 63, 835
BsoBI CYCGRG 1 cut(s) 23
Bsp143I GATC 5 cut(s) 100, 196, 581, 846, 986
BspACI CCGC 3 cut(s) 20, 510, 842
BspANI GGCC 2 cut(s) 63, 835
BspCNI CTCAG 4 cut(s) 301, 481, 790, 982
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 486, 543
BspPI GGATC 2 cut(s) 191, 994
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 541
BspTI CTTAAG 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 726
BsrI ACTGG 3 cut(s) 836, 898, 907
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 5 cut(s) 100, 196, 581, 846, 986
BssSI CACGAG 1 cut(s) 981
BssT1I CCWWGG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 981
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 648
BstAFI CTTAAG 1 cut(s) 179
BstAPI GCANNNNNTGC 2 cut(s) 392, 473
BstC8I GCNNGC 2 cut(s) 376, 660
BstDEI CTNAG 5 cut(s) 309, 489, 777, 956, 990
BstF5I GGATG 1 cut(s) 794
BstFNI CGCG 1 cut(s) 510
BstKTI GATC 5 cut(s) 103, 199, 584, 849, 989
BstMAI GTCTC 2 cut(s) 75, 437
BstMBI GATC 5 cut(s) 100, 196, 581, 846, 986
BstMWI GCNNNNNNNGC 5 cut(s) 392, 473, 787, 841, 868
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 881
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 263, 682, 799
BstV2I GAAGAC 1 cut(s) 598
BstX2I RGATCY 3 cut(s) 100, 846, 986
BstXI CCANNNNNNTGG 1 cut(s) 222
BstYI RGATCY 3 cut(s) 100, 846, 986
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 2 cut(s) 63, 835
BtsCI GGATG 1 cut(s) 794
BtsI GCAGTG 1 cut(s) 483
BtsIMutI CAGTG 3 cut(s) 483, 508, 891
Cac8I GCNNGC 2 cut(s) 376, 660
CaiI CAGNNNCTG 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 485
Csp6I GTAC 3 cut(s) 14, 640, 829
CviAII CATG 2 cut(s) 596, 878
CviQI GTAC 3 cut(s) 14, 640, 829
DdeI CTNAG 5 cut(s) 309, 489, 777, 956, 990
DpnI GATC 5 cut(s) 102, 198, 583, 848, 988
DpnII GATC 5 cut(s) 100, 196, 581, 846, 986
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 485
EcoRI GAATTC 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 599, 881
FaqI GGGAC 1 cut(s) 498
FatI CATG 2 cut(s) 595, 877
FauNDI CATATG 2 cut(s) 469, 804
Fnu4HI GCNGC 3 cut(s) 252, 671, 788
FokI GGATG 1 cut(s) 781
Fsp4HI GCNGC 3 cut(s) 252, 671, 788
FspBI CTAG 2 cut(s) 357, 521
GluI GCNGC 3 cut(s) 252, 671, 788
GsaI CCCAGC 1 cut(s) 748
HaeIII GGCC 2 cut(s) 63, 835
Hin1II CATG 2 cut(s) 599, 881
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 2 cut(s) 632, 970
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 991
Hpy188III TCNNGA 2 cut(s) 25, 686
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 4 cut(s) 428, 771, 808, 819
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 2 cut(s) 220, 496
HpyCH4V TGCA 9 cut(s) 323, 374, 403, 428, 476, 610, 670, 700, 787
HpyF10VI GCNNNNNNNGC 5 cut(s) 392, 473, 787, 841, 868
HpyF3I CTNAG 5 cut(s) 309, 489, 777, 956, 990
HpySE526I ACGT 2 cut(s) 220, 496
Hsp92II CATG 2 cut(s) 599, 881
Kzo9I GATC 5 cut(s) 100, 196, 581, 846, 986
LguI GCTCTTC 1 cut(s) 648
Lsp1109I GCAGC 3 cut(s) 263, 682, 799
LweI GCATC 2 cut(s) 444, 589
MaeI CTAG 2 cut(s) 357, 521
MaeII ACGT 2 cut(s) 220, 496
MaeIII GTNAC 2 cut(s) 48, 497
MalI GATC 5 cut(s) 102, 198, 583, 848, 988
MbiI CCGCTC 1 cut(s) 22
MboI GATC 5 cut(s) 100, 196, 581, 846, 986
MboII GAAGA 6 cut(s) 95, 325, 542, 603, 665, 765
MflI RGATCY 3 cut(s) 100, 846, 986
MluCI AATT 5 cut(s) 316, 420, 555, 617, 713
MlyI GAGTC 1 cut(s) 641
MnlI CCTC 8 cut(s) 117, 126, 364, 828, 831, 846, 864, 882
MseI TTAA 3 cut(s) 180, 725, 947
MspA1I CMGCKG 1 cut(s) 254
MspCI CTTAAG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 5 cut(s) 392, 473, 787, 841, 868
NdeI CATATG 2 cut(s) 469, 804
NdeII GATC 5 cut(s) 100, 196, 581, 846, 986
NlaIII CATG 2 cut(s) 599, 881
NlaIV GGNNCC 2 cut(s) 486, 543
NmuCI GTSAC 2 cut(s) 48, 497
NspI RCATGY 1 cut(s) 881
PaeR7I CTCGAG 1 cut(s) 23
PciSI GCTCTTC 1 cut(s) 648
PfeI GAWTC 1 cut(s) 970
PkrI GCNGC 3 cut(s) 253, 672, 789
PleI GAGTC 1 cut(s) 640
PpsI GAGTC 1 cut(s) 640
PpuMI RGGWCCY 1 cut(s) 485
PsiI TTATAA 1 cut(s) 32
Psp5II RGGWCCY 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 214
PspFI CCCAGC 1 cut(s) 744
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 486, 543
PspPI GGNCC 1 cut(s) 485
PspPPI RGGWCCY 1 cut(s) 485
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 3 cut(s) 100, 846, 986
PvuII CAGCTG 1 cut(s) 254
RsaI GTAC 3 cut(s) 15, 641, 830
RsaNI GTAC 3 cut(s) 14, 640, 829
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 3 cut(s) 180, 725, 947
SatI GCNGC 3 cut(s) 252, 671, 788
Sau3AI GATC 5 cut(s) 100, 196, 581, 846, 986
Sau96I GGNCC 1 cut(s) 485
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 1 cut(s) 216
SfaNI GCATC 2 cut(s) 444, 589
SfcI CTRYAG 1 cut(s) 447
Sfr274I CTCGAG 1 cut(s) 23
SinI GGWCC 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 4 cut(s) 23, 72, 179, 684
SmoI CTYRAG 4 cut(s) 23, 72, 179, 684
Sse9I AATT 5 cut(s) 316, 420, 555, 617, 713
SsiI CCGC 3 cut(s) 20, 510, 842
SspI AATATT 2 cut(s) 155, 278
SspMI CTAG 2 cut(s) 357, 521
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 2 cut(s) 223, 499
TaqI TCGA 4 cut(s) 24, 328, 382, 968
TasI AATT 5 cut(s) 316, 420, 555, 617, 713
TatI WGTACW 2 cut(s) 13, 828
TfiI GAWTC 1 cut(s) 970
Tru1I TTAA 3 cut(s) 180, 725, 947
Tru9I TTAA 3 cut(s) 180, 725, 947
TscAI CASTG 3 cut(s) 483, 508, 898
TseFI GTSAC 2 cut(s) 48, 497
TseI GCWGC 3 cut(s) 251, 670, 787
Tsp45I GTSAC 2 cut(s) 48, 497
TspDTI ATGAA 1 cut(s) 954
TspRI CASTG 3 cut(s) 483, 508, 898
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 1 cut(s) 316
XceI RCATGY 1 cut(s) 881
XhoI CTCGAG 1 cut(s) 23
XspI CTAG 2 cut(s) 357, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.