Rh5DG206900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001007
Physical Location & Seq
Forward (+)
22881041 .. 22882024
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG206900.1

Sequence Viewer

Length: 645 bp
ATGAGTTCCGAAGATAGTTCATGGGAAGGTGATATAGAAGGACCAAGTGATTCTGCTAATGGCACAGGCAAAACTACCAAAGTACGTGGTAAAGGAACATGTACTTGGATGGAAGATAATAAAAAAGAATCCCTCGAGTTCAATTTTATGGGTGTTAGTGTAGGTTCTAATGATGGAAAATTTGGCCGGTACTTGGGTGGGTTAGCTCGAGATTCTAATGTACTTCCGCTCGTCACTAAACCTTGGCCTAAGTCTCAAGTACTATTAAAGATCCCTTATGGGACCAAATATATGTATGCAACTATTGAATGGAAACCTGAAGATCTTCCTCGTCTACCTCTCATAAAGCATAATATAATGGAAAGAGTTGCTAAATATTGGAGAAGCTACAAGAACAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCACACCAGGACGTTGGGTGTGTGGGAATAAAGATGTCAACGCAGCTGAATGGCGCGAAATGGTGGAATATTGGGATACTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTGGCACCAAGACTTATGCACGCAGTCGAGCAGAATATATGCTAGTGAACAGGTGCATGATAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

214

Amino Acids

24.58

Weight (kDa)

9.45

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 159 - 204 1.8e-10 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 581
AccBSI CCGCTC 1 cut(s) 229
AccI GTMKAC 1 cut(s) 334
AccII CGCG 1 cut(s) 486
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 265, 413
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 179, 538
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 5 cut(s) 84, 103, 191, 222, 261
AfiI CCNNNNNNNGG 2 cut(s) 193, 428
AflII CTTAAG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 2 cut(s) 142, 308
AjnI CCWGG 1 cut(s) 436
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 4 cut(s) 206, 387, 410, 476
AluI AGCT 4 cut(s) 206, 387, 410, 476
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 2 cut(s) 265, 413
Ama87I CYCGRG 2 cut(s) 134, 207
AoxI GGCC 2 cut(s) 184, 245
ApeKI GCWGC 1 cut(s) 473
ApoI RAATTY 2 cut(s) 179, 538
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 2 cut(s) 41, 282
AsuHPI GGTGA 1 cut(s) 41
AvaI CYCGRG 2 cut(s) 134, 207
AvaII GGWCC 2 cut(s) 41, 282
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BanI GGYRCC 1 cut(s) 581
BbvI GCAGC 1 cut(s) 485
BccI CCATC 2 cut(s) 103, 167
BciT130I CCWGG 1 cut(s) 438
BciVI GTATCC 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 1 cut(s) 620
BfrI CTTAAG 1 cut(s) 401
BfuI GTATCC 1 cut(s) 499
BglII AGATCT 1 cut(s) 322
BisI GCNGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 475
BmcAI AGTACT 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 2 cut(s) 41, 282
BmeT110I CYCGRG 2 cut(s) 134, 207
BmgT120I GGNCC 2 cut(s) 41, 282
BmiI GGNNCC 2 cut(s) 283, 583
BmrFI CCNGG 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 240
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 428
Bse118I RCCGGY 1 cut(s) 186
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 193, 428
BseMII CTCAG 1 cut(s) 522
BseXI GCAGC 1 cut(s) 485
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 2 cut(s) 186, 247
BshNI GGYRCC 1 cut(s) 581
BsiHKCI CYCGRG 2 cut(s) 134, 207
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 193, 428
BsmAI GTCTC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 2 cut(s) 186, 247
BsoBI CYCGRG 2 cut(s) 134, 207
Bsp143I GATC 3 cut(s) 270, 322, 418
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 186, 247
BspCNI CTCAG 1 cut(s) 523
BspFNI CGCG 1 cut(s) 486
BspLI GGNNCC 2 cut(s) 283, 583
BspPI GGATC 2 cut(s) 265, 413
BspT107I GGYRCC 1 cut(s) 581
BspTI CTTAAG 1 cut(s) 401
BsrBI CCGCTC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 3 cut(s) 270, 322, 418
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 523
BstAFI CTTAAG 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 2 cut(s) 249, 531
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 486
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 3 cut(s) 273, 325, 421
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 3 cut(s) 270, 322, 418
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 436
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 485
BstX2I RGATCY 2 cut(s) 270, 322
BstXI CCANNNNNNTGG 1 cut(s) 444
BstYI RGATCY 2 cut(s) 270, 322
BsuI GTATCC 1 cut(s) 499
BsuRI GGCC 2 cut(s) 186, 247
BtsCI GGATG 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 598
CfoI GCGC 1 cut(s) 486
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 41, 282
Csp6I GTAC 5 cut(s) 83, 102, 190, 221, 260
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 21, 99, 634
CviJI RGCY 6 cut(s) 186, 206, 247, 387, 410, 476
CviKI_1 RGCY 6 cut(s) 186, 206, 247, 387, 410, 476
CviQI GTAC 5 cut(s) 83, 102, 190, 221, 260
DdeI CTNAG 2 cut(s) 249, 531
DpnI GATC 3 cut(s) 272, 324, 420
DpnII GATC 3 cut(s) 270, 322, 418
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 41, 282
Eco57I CTGAAG 1 cut(s) 339
Eco88I CYCGRG 2 cut(s) 134, 207
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 3 cut(s) 24, 102, 637
FaqI GGGAC 1 cut(s) 295
FatI CATG 3 cut(s) 20, 98, 633
FblI GTMKAC 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 474
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 474
FspBI CTAG 1 cut(s) 620
GlaI GCGC 1 cut(s) 485
GluI GCNGC 1 cut(s) 474
HaeIII GGCC 2 cut(s) 186, 247
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 486
Hin1II CATG 3 cut(s) 24, 102, 637
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 3 cut(s) 50, 128, 212
HpaII CCGG 1 cut(s) 187
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 3 cut(s) 335, 469, 625
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 3 cut(s) 335, 469, 625
HpyAV CCTTC 2 cut(s) 20, 32
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 2 cut(s) 85, 442
HpyCH4V TGCA 4 cut(s) 299, 545, 596, 633
HpyF3I CTNAG 2 cut(s) 249, 531
HpySE526I ACGT 2 cut(s) 85, 442
Hsp92II CATG 3 cut(s) 24, 102, 637
HspAI GCGC 1 cut(s) 484
Kzo9I GATC 3 cut(s) 270, 322, 418
LpnPI CCDG 7 cut(s) 51, 200, 330, 423, 450, 564, 613
Lsp1109I GCAGC 1 cut(s) 485
MaeI CTAG 1 cut(s) 620
MaeII ACGT 2 cut(s) 85, 442
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 272, 324, 420
MbiI CCGCTC 1 cut(s) 229
MboI GATC 3 cut(s) 270, 322, 418
MboII GAAGA 5 cut(s) 23, 125, 317, 332, 547
MflI RGATCY 2 cut(s) 270, 322
MluCI AATT 4 cut(s) 142, 179, 525, 538
MnlI CCTC 4 cut(s) 143, 339, 348, 586
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 2 cut(s) 266, 402
MspA1I CMGCKG 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 486
NdeII GATC 3 cut(s) 270, 322, 418
NlaIII CATG 3 cut(s) 24, 102, 637
NlaIV GGNNCC 2 cut(s) 283, 583
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 102
PaeR7I CTCGAG 2 cut(s) 134, 207
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 3 cut(s) 50, 128, 212
PkrI GCNGC 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 86
PscI ACATGT 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 2 cut(s) 283, 583
PspPI GGNCC 2 cut(s) 41, 282
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 2 cut(s) 270, 322
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 5 cut(s) 84, 103, 191, 222, 261
RsaNI GTAC 5 cut(s) 83, 102, 190, 221, 260
SaqAI TTAA 2 cut(s) 266, 402
SatI GCNGC 1 cut(s) 474
Sau3AI GATC 3 cut(s) 270, 322, 418
Sau96I GGNCC 2 cut(s) 41, 282
ScaI AGTACT 1 cut(s) 261
ScrFI CCNGG 1 cut(s) 438
Sfr274I CTCGAG 2 cut(s) 134, 207
SinI GGWCC 2 cut(s) 41, 282
SlaI CTCGAG 2 cut(s) 134, 207
SmlI CTYRAG 4 cut(s) 134, 207, 255, 401
SmoI CTYRAG 4 cut(s) 134, 207, 255, 401
Sse9I AATT 4 cut(s) 142, 179, 525, 538
SsiI CCGC 1 cut(s) 227
SspI AATATT 2 cut(s) 377, 500
SspMI CTAG 1 cut(s) 620
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 2 cut(s) 88, 445
TaqI TCGA 4 cut(s) 135, 208, 550, 604
TasI AATT 4 cut(s) 142, 179, 525, 538
TatI WGTACW 3 cut(s) 101, 220, 259
TfiI GAWTC 3 cut(s) 50, 128, 212
Tru1I TTAA 2 cut(s) 266, 402
Tru9I TTAA 2 cut(s) 266, 402
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 9
Vha464I CTTAAG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 41, 282
XapI RAATTY 2 cut(s) 179, 538
XceI RCATGY 1 cut(s) 102
XhoI CTCGAG 2 cut(s) 134, 207
XmiI GTMKAC 1 cut(s) 334
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 1 cut(s) 620
ZrmI AGTACT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.