Rh6AG013800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001007
Physical Location & Seq
Forward (+)
1457073 .. 1466045
8973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG013800.1

Sequence Viewer

Length: 321 bp
ATGGTGAAATATTGGGATACTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACTTTTGGCACCAAGACTTATGCACGCAGTCGAGCAGAATATCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTATGATAAGCATACACGGAATGACAAAGAAAAAACCTGGATTGATGAAGTTGCTGAGCGGACACATCCTGTAATTCTGCCGGAGTCCTTGGTTGTTTGGGTTGGCTTGATAAAATGTGTGCAGCATGATGAGGTTCGCCAAAGCTGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

106

Amino Acids

12.6

Weight (kDa)

8.52

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 1 - 77 1.5e-14 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 92
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 1 cut(s) 49
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 312
AluI AGCT 1 cut(s) 312
AlwI GGATC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 16
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 10
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 1 cut(s) 290
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 33, 213
BseXI GCAGC 1 cut(s) 301
BsgI GTGCAG 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 1 cut(s) 151
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 1 cut(s) 226
BspCNI CTCAG 2 cut(s) 34, 214
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 92
BsrBI CCGCTC 1 cut(s) 226
BssECI CCNNGG 1 cut(s) 255
BssMI GATC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 42, 222
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 301
BsuI GTATCC 1 cut(s) 10
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 1 cut(s) 142
CviAII CATG 3 cut(s) 137, 143, 293
CviJI RGCY 3 cut(s) 148, 273, 312
CviKI_1 RGCY 3 cut(s) 148, 273, 312
DdeI CTNAG 2 cut(s) 42, 222
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 3 cut(s) 140, 146, 296
FaiI YATR 6 cut(s) 105, 138, 144, 171, 180, 294
FatI CATG 3 cut(s) 136, 142, 292
Fnu4HI GCNGC 1 cut(s) 290
FokI GGATG 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 290
HapII CCGG 1 cut(s) 248
Hin1II CATG 3 cut(s) 140, 146, 296
HinfI GANTC 1 cut(s) 251
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 2 cut(s) 130, 143
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 3 cut(s) 56, 107, 289
HpyF3I CTNAG 2 cut(s) 42, 222
Hsp92II CATG 3 cut(s) 140, 146, 296
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 190, 217, 249, 261
Lsp1109I GCAGC 1 cut(s) 301
MalI GATC 1 cut(s) 153
MbiI CCGCTC 1 cut(s) 226
MboI GATC 1 cut(s) 151
MboII GAAGA 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 3 cut(s) 36, 49, 240
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 1 cut(s) 292
MseI TTAA 1 cut(s) 319
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
NdeII GATC 1 cut(s) 151
NlaIII CATG 3 cut(s) 140, 146, 296
NlaIV GGNNCC 1 cut(s) 94
PagI TCATGA 1 cut(s) 142
PkrI GCNGC 1 cut(s) 291
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 1 cut(s) 151
SchI GAGTC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 150
SetI ASST 3 cut(s) 206, 303, 314
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 3 cut(s) 36, 49, 240
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 203
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 61, 115
TasI AATT 3 cut(s) 36, 49, 240
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TseI GCWGC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 199
XapI RAATTY 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.