Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032481.1

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3291

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032481.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 829 bp

gggcccagtacctggagcccgaggagaggttgcgttggtttttgaggacaatcctttgtcaaaaattggtgtgaggtttgataaacaagtatttgatggtgttgatcttgggggtctttgtaaaggaaatggattcttctgcaatgcctccgatcttcgttcagaaaacacaggtgcggatgatctggataaattactgatcaatacattgtttgaggctgtacatagtgagagcagaggttctcctttcattttgttcatgaaagatgcggagaagtcccttgtaggaaattcagattcatattccacattcagaggcagacttgataagctgcctgataacgtggttgtaattggctctcatactcatactgacaatcgcaaggagaagtcgcatcctggtggtctacttttcacaaagttcggtagcaatcaaactgctcttcttgatttggcttttccggatagttttggaagactgcatgaaagagggaaggaagtccccaaggcaacaaaacttctgacgaaactttttcctaataaagtaaccattcatatgccacaggatgagggacttcttgtctcatggaaacagcaattggatcgtgatgccgaaaccctcaaaatgaagggaaatttgaaccacttgcgcagtgttctgggtcggtgtgggatggaatgtgaaggacttgatacgctaagcatcaaggaccaaacacttacaaatgaaagttcagagaaggtagtaggatgggcattaagccatcatttaatggagaatcctgaagctgatccagaaactagagttgttttgtctgctgagaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

275

Amino Acids

30.29

Weight (kDa)

5.88

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	651
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccI	GTMKAC	1 cut(s)	407
AccIII	TCCGGA	1 cut(s)	461
AciI	CCGC	2 cut(s)	177, 270
AclWI	GGATC	2 cut(s)	610, 786
AcsI	RAATTY	2 cut(s)	290, 635
AcuI	CTGAAG	1 cut(s)	805
AfaI	GTAC	2 cut(s)	10, 223
AfiI	CCNNNNNNNGG	2 cut(s)	12, 26
AgsI	TTSAA	1 cut(s)	641
AhdI	GACNNNNNGTC	1 cut(s)	579
AjnI	CCWGG	2 cut(s)	11, 398
AjuI	GAANNNNNNNTTGG	2 cut(s)	582, 614
AluBI	AGCT	2 cut(s)	332, 789
AluI	AGCT	2 cut(s)	332, 789
Alw26I	GTCTC	1 cut(s)	587
AlwI	GGATC	2 cut(s)	610, 786
AlwNI	CAGNNNCTG	1 cut(s)	12
Ama87I	CYCGRG	1 cut(s)	19
Aor13HI	TCCGGA	1 cut(s)	461
AoxI	GGCC	1 cut(s)	2
ApaI	GGGCCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	2 cut(s)	290, 635
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	3 cut(s)	2, 3, 710
AvaI	CYCGRG	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	710
BaeGI	GKGCMC	1 cut(s)	6
BanII	GRGCYC	2 cut(s)	6, 20
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	4 cut(s)	90, 668, 745, 772
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BciT130I	CCWGG	2 cut(s)	13, 400
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	1 cut(s)	802
BisI	GCNGC	1 cut(s)	333
BlpI	GCTNAGC	1 cut(s)	699
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	2 cut(s)	13, 400
Bme18I	GGWCC	1 cut(s)	710
BmeRI	GACNNNNNGTC	1 cut(s)	579
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	3 cut(s)	2, 3, 710
BmiI	GGNNCC	2 cut(s)	4, 17
BmrFI	CCNGG	2 cut(s)	13, 400
BmsI	GCATC	4 cut(s)	257, 404, 599, 712
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	1 cut(s)	34
Bpu1102I	GCTNAGC	1 cut(s)	699
BsaJI	CCNNGG	2 cut(s)	20, 505
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 26
Bse1I	ACTGG	1 cut(s)	6
Bse3DI	GCAATG	1 cut(s)	149
BseAI	TCCGGA	1 cut(s)	461
BseBI	CCWGG	2 cut(s)	13, 400
BseDI	CCNNGG	2 cut(s)	20, 505
BseGI	GGATG	5 cut(s)	185, 395, 572, 679, 756
BseLI	CCNNNNNNNGG	2 cut(s)	12, 26
BseMI	GCAATG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	811
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	1 cut(s)	37
BseSI	GKGCMC	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	3 cut(s)	263, 486, 586
BslI	CCNNNNNNNGG	2 cut(s)	12, 26
BsmAI	GTCTC	1 cut(s)	587
BsmFI	GGGAC	3 cut(s)	263, 486, 586
BsnI	GGCC	1 cut(s)	4
BsoBI	CYCGRG	1 cut(s)	19
Bsp120I	GGGCCC	1 cut(s)	2
Bsp1286I	GDGCHC	2 cut(s)	6, 20
Bsp13I	TCCGGA	1 cut(s)	461
Bsp1407I	TGTACA	1 cut(s)	221
Bsp143I	GATC	6 cut(s)	104, 152, 182, 199, 602, 791
Bsp1720I	GCTNAGC	1 cut(s)	699
BspACI	CCGC	2 cut(s)	177, 270
BspANI	GGCC	1 cut(s)	4
BspCNI	CTCAG	1 cut(s)	812
BspEI	TCCGGA	1 cut(s)	461
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	2 cut(s)	4, 17
BspPI	GGATC	2 cut(s)	610, 786
BspQI	GCTCTTC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	2 cut(s)	20, 505
BssMI	GATC	6 cut(s)	104, 152, 182, 199, 602, 791
BssT1I	CCWWGG	1 cut(s)	505
Bst2UI	CCWGG	2 cut(s)	13, 400
Bst6I	CTCTTC	1 cut(s)	448
BstAUI	TGTACA	1 cut(s)	221
BstDEI	CTNAG	2 cut(s)	699, 820
BstF5I	GGATG	5 cut(s)	185, 395, 572, 679, 756
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	6 cut(s)	107, 155, 185, 202, 605, 794
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	6 cut(s)	104, 152, 182, 199, 602, 791
BstNI	CCWGG	2 cut(s)	13, 400
BstSCI	CCNGG	2 cut(s)	11, 398
BstSLI	GKGCMC	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	482
BsuRI	GGCC	1 cut(s)	4
BtsCI	GGATG	5 cut(s)	185, 395, 572, 679, 756
BtsI	GCAGTG	1 cut(s)	659
BtsIMutI	CAGTG	1 cut(s)	659
CaiI	CAGNNNCTG	1 cut(s)	12
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	3 cut(s)	2, 3, 710
Csp6I	GTAC	2 cut(s)	9, 222
CviAII	CATG	3 cut(s)	260, 483, 586
CviJI	RGCY	8 cut(s)	4, 18, 219, 332, 358, 456, 763, 789
CviKI_1	RGCY	8 cut(s)	4, 18, 219, 332, 358, 456, 763, 789
CviQI	GTAC	2 cut(s)	9, 222
DdeI	CTNAG	2 cut(s)	699, 820
DpnI	GATC	6 cut(s)	106, 154, 184, 201, 604, 793
DpnII	GATC	6 cut(s)	104, 152, 182, 199, 602, 791
DriI	GACNNNNNGTC	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	448
Eam1105I	GACNNNNNGTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	505
Eco24I	GRGCYC	2 cut(s)	6, 20
Eco47I	GGWCC	1 cut(s)	710
Eco57I	CTGAAG	1 cut(s)	805
Eco88I	CYCGRG	1 cut(s)	19
EcoRII	CCWGG	2 cut(s)	11, 398
EcoT14I	CCWWGG	1 cut(s)	505
EcoT38I	GRGCYC	2 cut(s)	6, 20
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	3 cut(s)	263, 486, 589
FaiI	YATR	9 cut(s)	226, 261, 302, 364, 370, 484, 556, 558, 587
FaqI	GGGAC	3 cut(s)	263, 486, 586
FatI	CATG	3 cut(s)	259, 482, 585
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	407
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	5 cut(s)	192, 382, 579, 686, 763
FriOI	GRGCYC	2 cut(s)	6, 20
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	802
FspI	TGCGCA	1 cut(s)	651
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	4
HapII	CCGG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	3 cut(s)	263, 486, 589
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HinfI	GANTC	3 cut(s)	133, 297, 779
HpaII	CCGG	1 cut(s)	462
Hpy166II	GTNNAC	1 cut(s)	408
Hpy188I	TCNGA	6 cut(s)	152, 164, 296, 315, 523, 737
Hpy188III	TCNNGA	7 cut(s)	186, 260, 447, 462, 606, 783, 795
Hpy8I	GTNNAC	1 cut(s)	408
HpyAV	CCTTC	4 cut(s)	488, 623, 678, 734
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	2 cut(s)	142, 482
HpyF3I	CTNAG	2 cut(s)	699, 820
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	263, 486, 589
HspAI	GCGC	1 cut(s)	650
Kpn2I	TCCGGA	1 cut(s)	461
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	104, 152, 182, 199, 602, 791
LguI	GCTCTTC	1 cut(s)	448
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	4 cut(s)	257, 404, 599, 712
MaeI	CTAG	1 cut(s)	802
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	545
MalI	GATC	6 cut(s)	106, 154, 184, 201, 604, 793
MboI	GATC	6 cut(s)	104, 152, 182, 199, 602, 791
MboII	GAAGA	4 cut(s)	128, 147, 435, 487
MfeI	CAATTG	1 cut(s)	597
MhlI	GDGCHC	2 cut(s)	6, 20
MluCI	AATT	6 cut(s)	64, 192, 290, 352, 597, 635
MroI	TCCGGA	1 cut(s)	461
MseI	TTAA	2 cut(s)	759, 771
MslI	CAYNNNNRTG	2 cut(s)	400, 555
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	2 cut(s)	13, 400
MunI	CAATTG	1 cut(s)	597
MvaI	CCWGG	2 cut(s)	13, 400
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	6 cut(s)	104, 152, 182, 199, 602, 791
NlaIII	CATG	3 cut(s)	263, 486, 589
NlaIV	GGNNCC	2 cut(s)	4, 17
NsbI	TGCGCA	1 cut(s)	651
PagI	TCATGA	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	448
PfeI	GAWTC	3 cut(s)	133, 297, 779
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	334
Psp6I	CCWGG	2 cut(s)	11, 398
PspGI	CCWGG	2 cut(s)	11, 398
PspN4I	GGNNCC	2 cut(s)	4, 17
PspOMI	GGGCCC	1 cut(s)	2
PspPI	GGNCC	3 cut(s)	2, 3, 710
PstNI	CAGNNNCTG	1 cut(s)	12
RsaI	GTAC	2 cut(s)	10, 223
RsaNI	GTAC	2 cut(s)	9, 222
RseI	CAYNNNNRTG	2 cut(s)	400, 555
SapI	GCTCTTC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	759, 771
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	6 cut(s)	104, 152, 182, 199, 602, 791
Sau96I	GGNCC	3 cut(s)	2, 3, 710
ScrFI	CCNGG	2 cut(s)	13, 400
SduI	GDGCHC	2 cut(s)	6, 20
SfaNI	GCATC	4 cut(s)	257, 404, 599, 712
SinI	GGWCC	1 cut(s)	710
SmiMI	CAYNNNNRTG	2 cut(s)	400, 555
Sse9I	AATT	6 cut(s)	64, 192, 290, 352, 597, 635
SsiI	CCGC	2 cut(s)	177, 270
SspMI	CTAG	1 cut(s)	802
StyD4I	CCNGG	2 cut(s)	11, 398
StyI	CCWWGG	1 cut(s)	505
TaiI	ACGT	1 cut(s)	346
TasI	AATT	6 cut(s)	64, 192, 290, 352, 597, 635
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	3 cut(s)	133, 297, 779
Tru1I	TTAA	2 cut(s)	759, 771
Tru9I	TTAA	2 cut(s)	759, 771
TscAI	CASTG	1 cut(s)	659
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	8 cut(s)	239, 248, 276, 289, 499, 543, 642, 742
TspRI	CASTG	1 cut(s)	659
Van91I	CCANNNNNTGG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	2 cut(s)	290, 635
XmiI	GTMKAC	1 cut(s)	407
XspI	CTAG	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.