Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Reverse (-)

58232548 .. 58235283

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTATGTTCCTTTTGCAGGGGCCCAGTACCTGGAGCCCGAGGAGAGGTTGTGTTGGTTTTTGAGGACAATCCTTTGTCAAAAATTGGTGTGAGGTTTGATAAGCAAGTATTTGATGGTGTTGATCTTGGGGGTCTTTGTAAAGGAAATGGATTCTTCTGCAATGCCTCCGATATTCGTTCAGAAAACACAGGAGCGGATGATCTGGATAAATTACTGATCATTACATTGTTTGAGGCTGTGCATAGTGAGAGCAGAAGTTCTCCTTTCATTTTGTTCATGAAAGATGCGGAGAAGTCCCTTGTAGGAAATTCAGATTCATATTCCACATACAGAGGCAGACTTGATAAGCTTCCTGATAATGTGGTTGTAATTGGCTCTCATACTCATACTGACAATCGCAAGGAGAAGTCGCATCCTGGTGGTCTACTTTTCACAAAGTTCGGTAGCAATCAGACTGCTCTTCTTGATTTGGCTTTTCCGGATAGTTTTGGAAGACTGCATGAAAGAGGGAAGGAAGTCCCCAAGGCAACAAAACTTCTGACGAAACTTTTTCCTAATAAAGTAACCATTCATATGCCACAGGATGAGGGACTTCTTGTCTCATGGAAACAGCAATTGGATCGTGATGCCGAAACCCTCAAAATGAAGGGAAATTTGAACCACTTGCGCACTGTTCTGGGTCGGTGTGGGATGGAATGTGAAGAACTTGATATGCTAAGCATCAAGGACCAAACACTTACAAATGAAAGTTCAGAGAAGGTAGTAGGATGGGCATTAAGCCATCATTTAATGGAGAATCCTGAAGCTGATCCAGAAACTAGAGTTGTTTTGTCTGCTGAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

282

Amino Acids

31.32

Weight (kDa)

5.88

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7751	PF24933	232 - 280	8e-14	Domain of unknown function (DUF7751)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	671
AccB7I	CCANNNNNTGG	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	197
AccI	GTMKAC	1 cut(s)	427
AccIII	TCCGGA	1 cut(s)	481
AciI	CCGC	2 cut(s)	197, 290
AclWI	GGATC	2 cut(s)	630, 806
AcsI	RAATTY	2 cut(s)	310, 655
AcuI	CTGAAG	1 cut(s)	825
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	3 cut(s)	18, 32, 46
AgsI	TTSAA	1 cut(s)	661
AhdI	GACNNNNNGTC	1 cut(s)	599
AjnI	CCWGG	2 cut(s)	31, 418
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	2 cut(s)	352, 809
AluI	AGCT	2 cut(s)	352, 809
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	2 cut(s)	630, 806
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	1 cut(s)	39
Aor13HI	TCCGGA	1 cut(s)	481
AoxI	GGCC	1 cut(s)	22
ApaI	GGGCCC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	310, 655
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	3 cut(s)	22, 23, 730
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	730
BaeGI	GKGCMC	1 cut(s)	26
BanII	GRGCYC	2 cut(s)	26, 40
BbsI	GAAGAC	1 cut(s)	502
BccI	CCATC	4 cut(s)	110, 688, 765, 792
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	2 cut(s)	33, 420
BclI	TGATCA	1 cut(s)	219
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	1 cut(s)	822
BlpI	GCTNAGC	1 cut(s)	719
Bme1390I	CCNGG	2 cut(s)	33, 420
Bme18I	GGWCC	1 cut(s)	730
BmeRI	GACNNNNNGTC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	3 cut(s)	22, 23, 730
BmiI	GGNNCC	3 cut(s)	23, 24, 37
BmrFI	CCNGG	2 cut(s)	33, 420
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	4 cut(s)	277, 424, 619, 732
BmuI	ACTGGG	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	719
BsaJI	CCNNGG	2 cut(s)	40, 525
BsaWI	WCCGGW	1 cut(s)	481
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 32, 46
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	169
BseAI	TCCGGA	1 cut(s)	481
BseBI	CCWGG	2 cut(s)	33, 420
BseDI	CCNNGG	2 cut(s)	40, 525
BseGI	GGATG	5 cut(s)	205, 415, 592, 699, 776
BseLI	CCNNNNNNNGG	3 cut(s)	18, 32, 46
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	831
BseNI	ACTGG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	26
BshFI	GGCC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	482
BslFI	GGGAC	3 cut(s)	283, 506, 606
BslI	CCNNNNNNNGG	3 cut(s)	18, 32, 46
BsmAI	GTCTC	1 cut(s)	607
BsmFI	GGGAC	3 cut(s)	283, 506, 606
BsnI	GGCC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	39
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	26, 40
Bsp13I	TCCGGA	1 cut(s)	481
Bsp143I	GATC	5 cut(s)	124, 202, 219, 622, 811
Bsp1720I	GCTNAGC	1 cut(s)	719
BspACI	CCGC	2 cut(s)	197, 290
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	1 cut(s)	832
BspEI	TCCGGA	1 cut(s)	481
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	23, 24, 37
BspPI	GGATC	2 cut(s)	630, 806
BspQI	GCTCTTC	1 cut(s)	468
BsrBI	CCGCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	40, 525
BssMI	GATC	5 cut(s)	124, 202, 219, 622, 811
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	33, 420
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	719, 840
BstENI	CCTNNNNNAGG	1 cut(s)	16
BstF5I	GGATG	5 cut(s)	205, 415, 592, 699, 776
BstHHI	GCGC	1 cut(s)	672
BstKTI	GATC	5 cut(s)	127, 205, 222, 625, 814
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	5 cut(s)	124, 202, 219, 622, 811
BstNI	CCWGG	2 cut(s)	33, 420
BstSCI	CCNGG	2 cut(s)	31, 418
BstSLI	GKGCMC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	5 cut(s)	205, 415, 592, 699, 776
BtsIMutI	CAGTG	1 cut(s)	672
CaiI	CAGNNNCTG	1 cut(s)	32
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	672
Cfr13I	GGNCC	3 cut(s)	22, 23, 730
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	3 cut(s)	280, 503, 606
CviJI	RGCY	8 cut(s)	24, 38, 239, 352, 378, 476, 783, 809
CviKI_1	RGCY	8 cut(s)	24, 38, 239, 352, 378, 476, 783, 809
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	719, 840
DpnI	GATC	5 cut(s)	126, 204, 221, 624, 813
DpnII	GATC	5 cut(s)	124, 202, 219, 622, 811
DriI	GACNNNNNGTC	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	468
Eam1105I	GACNNNNNGTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	468
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	2 cut(s)	26, 40
Eco47I	GGWCC	1 cut(s)	730
Eco57I	CTGAAG	1 cut(s)	825
Eco88I	CYCGRG	1 cut(s)	39
EcoNI	CCTNNNNNAGG	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	22
EcoRII	CCWGG	2 cut(s)	31, 418
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	2 cut(s)	26, 40
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	3 cut(s)	283, 506, 609
FalI	AAGNNNNNCTT	2 cut(s)	250, 282
FaqI	GGGAC	3 cut(s)	283, 506, 606
FatI	CATG	3 cut(s)	279, 502, 605
FauNDI	CATATG	1 cut(s)	576
FbaI	TGATCA	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	427
FokI	GGATG	5 cut(s)	212, 402, 599, 706, 783
FriOI	GRGCYC	2 cut(s)	26, 40
FspBI	CTAG	1 cut(s)	822
FspI	TGCGCA	1 cut(s)	671
GlaI	GCGC	1 cut(s)	671
GsuI	CTGGAG	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	482
HhaI	GCGC	1 cut(s)	672
Hin1II	CATG	3 cut(s)	283, 506, 609
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	3 cut(s)	153, 317, 799
HpaII	CCGG	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	6 cut(s)	172, 184, 316, 456, 543, 757
Hpy188III	TCNNGA	8 cut(s)	206, 280, 356, 467, 482, 626, 803, 815
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	3 cut(s)	508, 643, 754
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4V	TGCA	4 cut(s)	18, 162, 244, 502
HpyF3I	CTNAG	2 cut(s)	719, 840
Hsp92II	CATG	3 cut(s)	283, 506, 609
HspAI	GCGC	1 cut(s)	670
Kpn2I	TCCGGA	1 cut(s)	481
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	5 cut(s)	124, 202, 219, 622, 811
LguI	GCTCTTC	1 cut(s)	468
LmnI	GCTCC	2 cut(s)	35, 194
LweI	GCATC	4 cut(s)	277, 424, 619, 732
MaeI	CTAG	1 cut(s)	822
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	5 cut(s)	126, 204, 221, 624, 813
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	5 cut(s)	124, 202, 219, 622, 811
MboII	GAAGA	4 cut(s)	148, 455, 507, 716
MfeI	CAATTG	1 cut(s)	617
MhlI	GDGCHC	2 cut(s)	26, 40
MluCI	AATT	6 cut(s)	84, 212, 310, 372, 617, 655
MroI	TCCGGA	1 cut(s)	481
MseI	TTAA	2 cut(s)	779, 791
MslI	CAYNNNNRTG	2 cut(s)	420, 575
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	2 cut(s)	33, 420
MunI	CAATTG	1 cut(s)	617
MvaI	CCWGG	2 cut(s)	33, 420
NdeI	CATATG	1 cut(s)	576
NdeII	GATC	5 cut(s)	124, 202, 219, 622, 811
NlaIII	CATG	3 cut(s)	283, 506, 609
NlaIV	GGNNCC	3 cut(s)	23, 24, 37
NsbI	TGCGCA	1 cut(s)	671
PagI	TCATGA	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	153, 317, 799
PflMI	CCANNNNNTGG	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	31, 418
PspGI	CCWGG	2 cut(s)	31, 418
PspN4I	GGNNCC	3 cut(s)	23, 24, 37
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	3 cut(s)	22, 23, 730
PstNI	CAGNNNCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	420, 575
SapI	GCTCTTC	1 cut(s)	468
SaqAI	TTAA	2 cut(s)	779, 791
Sau3AI	GATC	5 cut(s)	124, 202, 219, 622, 811
Sau96I	GGNCC	3 cut(s)	22, 23, 730
ScrFI	CCNGG	2 cut(s)	33, 420
SduI	GDGCHC	2 cut(s)	26, 40
SetI	ASST	7 cut(s)	34, 51, 98, 354, 765, 811, 848
SfaNI	GCATC	4 cut(s)	277, 424, 619, 732
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	2 cut(s)	420, 575
Sse9I	AATT	6 cut(s)	84, 212, 310, 372, 617, 655
SsiI	CCGC	2 cut(s)	197, 290
SspMI	CTAG	1 cut(s)	822
StyD4I	CCNGG	2 cut(s)	31, 418
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	676
TasI	AATT	6 cut(s)	84, 212, 310, 372, 617, 655
TfiI	GAWTC	3 cut(s)	153, 317, 799
Tru1I	TTAA	2 cut(s)	779, 791
Tru9I	TTAA	2 cut(s)	779, 791
TscAI	CASTG	1 cut(s)	679
TspDTI	ATGAA	8 cut(s)	259, 268, 296, 309, 519, 563, 662, 762
TspRI	CASTG	1 cut(s)	679
Van91I	CCANNNNNTGG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	730
XagI	CCTNNNNNAGG	1 cut(s)	16
XapI	RAATTY	2 cut(s)	310, 655
XmiI	GTMKAC	1 cut(s)	427
XspI	CTAG	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.