Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040697.1

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1650

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040697.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

actgctcttcttgatttggcttttccggatagttttggaagactgcatgaaagagggaaggaagtccccaaggcaacaaaacttctgacaaaactttttcctaataaagtaaccattcatatgccacaggatgagggacttcttgtctcatggaaacagcaattggatcgtgatgctgaaaccctcaaaatgaagggaaatttgaaccacttgcgcactgttctgggtcggtgtgggatggaatgtgaaggacttgatacgctaagcatcaaggaccaaacacttacaaatgaaagttcagagaaggtagtaggatgggcattaagccatcatttaatggagaatcctgaagctgatccagaaactagagttgttttgtctgctgagagcatcaagtacggacttggaatcttacagtctatccagaatgaaaataagagcttgaagaagtcacttaaggatgttgtcacggaaaatgaatttgagaaaaggcttttggctgatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA FHA

Protein Analysis

168

Amino Acids

18.89

Weight (kDa)

5.98

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	25
AclWI	GGATC	2 cut(s)	174, 350
AcsI	RAATTY	2 cut(s)	199, 479
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	398
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	2 cut(s)	205, 445
AhdI	GACNNNNNGTC	1 cut(s)	143
AjuI	GAANNNNNNNTTGG	3 cut(s)	146, 178, 479
AluBI	AGCT	2 cut(s)	353, 441
AluI	AGCT	2 cut(s)	353, 441
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	174, 350
Aor13HI	TCCGGA	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	199, 479
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	46
BccI	CCATC	3 cut(s)	232, 309, 336
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	366
BfrI	CTTAAG	1 cut(s)	455
BlpI	GCTNAGC	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	274
BmeRI	GACNNNNNGTC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	274
BmsI	GCATC	3 cut(s)	163, 276, 399
BpiI	GAAGAC	1 cut(s)	46
Bpu1102I	GCTNAGC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	25
BseAI	TCCGGA	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	4 cut(s)	136, 243, 320, 466
BseMII	CTCAG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	50, 150
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	2 cut(s)	50, 150
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	166, 355
Bsp1720I	GCTNAGC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	376
BspEI	TCCGGA	1 cut(s)	25
BspPI	GGATC	2 cut(s)	174, 350
BspQI	GCTCTTC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	166, 355
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	220, 417
Bst6I	CTCTTC	1 cut(s)	12
BstAFI	CTTAAG	1 cut(s)	455
BstDEI	CTNAG	2 cut(s)	263, 384
BstF5I	GGATG	4 cut(s)	136, 243, 320, 466
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	2 cut(s)	169, 358
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	2 cut(s)	166, 355
BstV2I	GAAGAC	1 cut(s)	46
BtsCI	GGATG	4 cut(s)	136, 243, 320, 466
BtsIMutI	CAGTG	1 cut(s)	216
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	2 cut(s)	47, 150
CviJI	RGCY	6 cut(s)	20, 327, 353, 441, 493, 500
CviKI_1	RGCY	6 cut(s)	20, 327, 353, 441, 493, 500
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	263, 384
DpnI	GATC	2 cut(s)	168, 357
DpnII	GATC	2 cut(s)	166, 355
DriI	GACNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	12
Eam1105I	GACNNNNNGTC	1 cut(s)	143
EarI	CTCTTC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	50, 153
FaiI	YATR	4 cut(s)	48, 120, 122, 151
FaqI	GGGAC	2 cut(s)	50, 150
FatI	CATG	2 cut(s)	46, 149
FauNDI	CATATG	1 cut(s)	120
FokI	GGATG	4 cut(s)	143, 250, 327, 473
FspBI	CTAG	1 cut(s)	366
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	1 cut(s)	215
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	2 cut(s)	50, 153
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	343, 408
HpaII	CCGG	1 cut(s)	26
Hpy188I	TCNGA	2 cut(s)	87, 301
Hpy188III	TCNNGA	6 cut(s)	11, 26, 170, 347, 359, 424
HpyAV	CCTTC	4 cut(s)	52, 187, 242, 298
HpyCH4III	ACNGT	2 cut(s)	220, 417
HpyCH4V	TGCA	1 cut(s)	46
HpyF3I	CTNAG	2 cut(s)	263, 384
Hsp92II	CATG	2 cut(s)	50, 153
HspAI	GCGC	1 cut(s)	214
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	166, 355
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	6 cut(s)	39, 113, 209, 360, 372, 437
LweI	GCATC	3 cut(s)	163, 276, 399
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	3 cut(s)	109, 450, 466
MalI	GATC	2 cut(s)	168, 357
MboI	GATC	2 cut(s)	166, 355
MboII	GAAGA	2 cut(s)	51, 457
MfeI	CAATTG	1 cut(s)	161
MluCI	AATT	3 cut(s)	161, 199, 479
MnlI	CCTC	3 cut(s)	47, 127, 194
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	3 cut(s)	323, 335, 456
MslI	CAYNNNNRTG	1 cut(s)	119
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	120
NdeII	GATC	2 cut(s)	166, 355
NlaIII	CATG	2 cut(s)	50, 153
NmuCI	GTSAC	2 cut(s)	450, 466
NsbI	TGCGCA	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	343, 408
PspPI	GGNCC	1 cut(s)	274
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	323, 335, 456
Sau3AI	GATC	2 cut(s)	166, 355
Sau96I	GGNCC	1 cut(s)	274
SetI	ASST	3 cut(s)	309, 355, 443
SfaNI	GCATC	3 cut(s)	163, 276, 399
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	161, 199, 479
SspMI	CTAG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	220, 417
TasI	AATT	3 cut(s)	161, 199, 479
TfiI	GAWTC	2 cut(s)	343, 408
Tru1I	TTAA	3 cut(s)	323, 335, 456
Tru9I	TTAA	3 cut(s)	323, 335, 456
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	2 cut(s)	450, 466
Tsp45I	GTSAC	2 cut(s)	450, 466
TspDTI	ATGAA	6 cut(s)	63, 107, 206, 306, 444, 492
TspGWI	ACGGA	2 cut(s)	414, 485
TspRI	CASTG	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	2 cut(s)	199, 479
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.