Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008431.1

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Forward (+)

23913 .. 25616

Gene Structure 1704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008431.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgggtgttagtgtaggttctaatgatgaaaaatttggctggtacttgggtgggttagctcgagattctaatgtacttccgctcgtcactaaaccttggcctaaagtctcaagtactattaaagatcccttatgggaccaaatatatgctggtatgcaagagaagttggcagaaattgtagcagttgaaggtaatgagactacagagatgcgagaaagagcatatgttgcagtgatgggacctgagaaatgtcacagagttcgtggttatggactgggtgtaatacctgatatggtgccatatcttcaaattgatggtagctcatcatcacacagatcacatggaagacattatactcacttgcagtcacaatttatggagttagagtccaagtaccaacaacaacaacagcaagcacatgtgcaacaagttcaaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

146

Amino Acids

16.49

Weight (kDa)

6.29

Isoelectric Point (pI)

45.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	82
AciI	CCGC	1 cut(s)	80
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	4 cut(s)	44, 75, 115, 395
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	3 cut(s)	188, 308, 434
AluBI	AGCT	2 cut(s)	59, 321
AluI	AGCT	2 cut(s)	59, 321
Alw26I	GTCTC	2 cut(s)	112, 191
AlwI	GGATC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	136, 239
AvaI	CYCGRG	1 cut(s)	60
AvaII	GGWCC	2 cut(s)	136, 239
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BanI	GGYRCC	1 cut(s)	295
BarI	GAAGNNNNNNTAC	2 cut(s)	337, 369
BbsI	GAAGAC	1 cut(s)	352
BccI	CCATC	2 cut(s)	229, 308
BcoDI	GTCTC	2 cut(s)	112, 191
BfmI	CTRYAG	1 cut(s)	201
BmcAI	AGTACT	1 cut(s)	115
Bme18I	GGWCC	2 cut(s)	136, 239
BmeT110I	CYCGRG	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	136, 239
BmiI	GGNNCC	3 cut(s)	137, 240, 297
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bse1I	ACTGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	295
BsiHKCI	CYCGRG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	149, 252
BsmAI	GTCTC	2 cut(s)	112, 191
BsmFI	GGGAC	2 cut(s)	149, 252
BsnI	GGCC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	124, 335
BspACI	CCGC	1 cut(s)	80
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	137, 240, 297
BspPI	GGATC	1 cut(s)	119
BspT107I	GGYRCC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	2 cut(s)	124, 335
BssT1I	CCWWGG	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	2 cut(s)	243, 438
BstKTI	GATC	2 cut(s)	127, 338
BstMAI	GTCTC	2 cut(s)	112, 191
BstMBI	GATC	2 cut(s)	124, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	414
Cfr13I	GGNCC	2 cut(s)	136, 239
Csp6I	GTAC	4 cut(s)	43, 74, 114, 394
CviAII	CATG	2 cut(s)	341, 419
CviJI	RGCY	4 cut(s)	39, 59, 100, 321
CviKI_1	RGCY	4 cut(s)	39, 59, 100, 321
CviQI	GTAC	4 cut(s)	43, 74, 114, 394
DdeI	CTNAG	2 cut(s)	243, 438
DpnI	GATC	2 cut(s)	126, 337
DpnII	GATC	2 cut(s)	124, 335
Eco130I	CCWWGG	1 cut(s)	95
Eco47I	GGWCC	2 cut(s)	136, 239
Eco88I	CYCGRG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	2 cut(s)	344, 422
FaqI	GGGAC	2 cut(s)	149, 252
FatI	CATG	2 cut(s)	340, 418
FauNDI	CATATG	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	344, 422
HinfI	GANTC	2 cut(s)	65, 386
Hpy188III	TCNNGA	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	182
HpyCH4V	TGCA	4 cut(s)	157, 230, 364, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	243, 438
Hsp92II	CATG	2 cut(s)	344, 422
Kzo9I	GATC	2 cut(s)	124, 335
LpnPI	CCDG	5 cut(s)	25, 135, 255, 260, 300
LweI	GCATC	1 cut(s)	198
MaeIII	GTNAC	3 cut(s)	85, 251, 366
MalI	GATC	2 cut(s)	126, 337
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	2 cut(s)	124, 335
MboII	GAAGA	2 cut(s)	296, 357
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	4 cut(s)	32, 174, 309, 371
MlyI	GAGTC	1 cut(s)	395
MseI	TTAA	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	2 cut(s)	124, 335
NlaIII	CATG	2 cut(s)	344, 422
NlaIV	GGNNCC	3 cut(s)	137, 240, 297
NmuCI	GTSAC	3 cut(s)	85, 251, 366
NspI	RCATGY	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	60
PciI	ACATGT	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	65
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PpuMI	RGGWCCY	1 cut(s)	239
PscI	ACATGT	1 cut(s)	418
Psp5II	RGGWCCY	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	137, 240, 297
PspPI	GGNCC	2 cut(s)	136, 239
PspPPI	RGGWCCY	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	4 cut(s)	44, 75, 115, 395
RsaNI	GTAC	4 cut(s)	43, 74, 114, 394
SaqAI	TTAA	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	124, 335
Sau96I	GGNCC	2 cut(s)	136, 239
ScaI	AGTACT	1 cut(s)	115
SchI	GAGTC	1 cut(s)	395
SetI	ASST	7 cut(s)	19, 61, 97, 193, 244, 289, 323
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	201
Sfr274I	CTCGAG	1 cut(s)	60
SinI	GGWCC	2 cut(s)	136, 239
SlaI	CTCGAG	1 cut(s)	60
SmlI	CTYRAG	2 cut(s)	60, 109
SmoI	CTYRAG	2 cut(s)	60, 109
Sse9I	AATT	4 cut(s)	32, 174, 309, 371
SsiI	CCGC	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	95
TaqI	TCGA	1 cut(s)	61
TasI	AATT	4 cut(s)	32, 174, 309, 371
TatI	WGTACW	2 cut(s)	73, 113
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	3 cut(s)	85, 251, 366
Tsp45I	GTSAC	3 cut(s)	85, 251, 366
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	2 cut(s)	136, 239
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.