Rw7G007410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001007
Physical Location & Seq
Forward (+)
6498981 .. 6502793
3813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007410.1

Sequence Viewer

Length: 777 bp
ATGAGTTCTGAAGATAGTTCATGGGAAGGTGATATAGAAGGACTAAGTGATTCTGCTAATGGCACAGGCAAAACTACCAAAGTACGTGGTAAAGGAACATGTACTTGGATGGAAGATAACAAAAAAGAATCCCTCGAGTTCAATTCTATGGGTGTTAGTGTAGGTTCTAATGATGGAAAATTTGGCCGGTACTTGGGTGGGTTAGCTCGAGATTCTAATGTACTCCCGCTCGTCACTAAACCTTGGCCTAAAGTCTCAAGTACTATTAAAGATCCCTTATGGGACCAAATATATGCAACTATTGAATGGAAACCTGAAGATCTTCCTCGTATGCCTCTCATAAAGCATAACATAATGGAAAGAGTTGCTAAATATTGGAGAAGCTACAAGAACAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCACACCAGGACGTTGGGTGTGTGGAAATAAAGATGTCAACGCAGCTGAATGGCGCGAAATGGTGAAATATTGGGATACTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTGGCACCAAGAGTTATGCACGCAGTCGAGCAGAATATAGTTTACGAGAGCATCAACTGGAAGAACTTGACCAGGCATTTCCTATGAAGTTGAATCATATAGAGAAATACGTGCTGCTTCTTCGATATGAAACGGAGCTTGCAGAAGGACAAAGCACATTGCCAAATGGAGATGTGAAGCATGAAGTAAAACCTGAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

258

Amino Acids

29.6

Weight (kDa)

8.6

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 158 - 203 8.3e-11 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 578
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 1 cut(s) 483
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 266, 410
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 179, 535
AcuI CTGAAG 2 cut(s) 30, 336
AfaI GTAC 5 cut(s) 84, 103, 191, 222, 262
AfiI CCNNNNNNNGG 2 cut(s) 193, 425
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 3 cut(s) 142, 305, 667
AjnI CCWGG 2 cut(s) 433, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 5 cut(s) 206, 384, 407, 473, 712
AluI AGCT 5 cut(s) 206, 384, 407, 473, 712
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 2 cut(s) 266, 410
Ama87I CYCGRG 2 cut(s) 134, 207
AoxI GGCC 2 cut(s) 184, 245
ApeKI GCWGC 2 cut(s) 470, 688
ApoI RAATTY 2 cut(s) 179, 535
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 41, 502
AvaI CYCGRG 2 cut(s) 134, 207
AvaII GGWCC 1 cut(s) 283
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BanI GGYRCC 1 cut(s) 578
BbvI GCAGC 2 cut(s) 482, 675
BccI CCATC 2 cut(s) 103, 167
BciT130I CCWGG 2 cut(s) 435, 647
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 259
BfrI CTTAAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 496
BglII AGATCT 1 cut(s) 319
BisI GCNGC 2 cut(s) 471, 689
BlsI GCNGC 2 cut(s) 472, 690
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 435, 647
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 2 cut(s) 134, 207
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 2 cut(s) 284, 580
BmrFI CCNGG 2 cut(s) 435, 647
BmsI GCATC 1 cut(s) 634
Bpu10I CCTNAGC 1 cut(s) 768
BpuEI CTTGAG 1 cut(s) 241
BsaAI YACGTR 2 cut(s) 86, 685
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 425
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 636
Bse3DI GCAATG 1 cut(s) 731
BseBI CCWGG 2 cut(s) 435, 647
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 193, 425
BseMI GCAATG 1 cut(s) 731
BseMII CTCAG 2 cut(s) 519, 759
BseNI ACTGG 1 cut(s) 636
BseXI GCAGC 2 cut(s) 482, 675
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 2 cut(s) 186, 247
BshNI GGYRCC 1 cut(s) 578
BsiHKCI CYCGRG 2 cut(s) 134, 207
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 193, 425
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 186, 247
BsoBI CYCGRG 2 cut(s) 134, 207
Bsp143I GATC 3 cut(s) 271, 319, 415
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 186, 247
BspCNI CTCAG 2 cut(s) 520, 760
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 2 cut(s) 284, 580
BspPI GGATC 2 cut(s) 266, 410
BspT107I GGYRCC 1 cut(s) 578
BspTI CTTAAG 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 731
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 1 cut(s) 636
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 3 cut(s) 271, 319, 415
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 2 cut(s) 435, 647
Bst4CI ACNGT 1 cut(s) 520
BstAFI CTTAAG 1 cut(s) 398
BstBAI YACGTR 2 cut(s) 86, 685
BstC8I GCNNGC 2 cut(s) 595, 714
BstDEI CTNAG 3 cut(s) 44, 528, 768
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 3 cut(s) 274, 322, 418
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 271, 319, 415
BstNI CCWGG 2 cut(s) 435, 647
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 2 cut(s) 433, 645
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 2 cut(s) 482, 675
BstX2I RGATCY 2 cut(s) 271, 319
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 2 cut(s) 271, 319
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 2 cut(s) 186, 247
BtsCI GGATG 1 cut(s) 114
Cac8I GCNNGC 2 cut(s) 595, 714
CfoI GCGC 1 cut(s) 483
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 283
Csp6I GTAC 5 cut(s) 83, 102, 190, 221, 261
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 3 cut(s) 21, 99, 755
CviJI RGCY 8 cut(s) 186, 206, 247, 384, 407, 473, 712, 772
CviKI_1 RGCY 8 cut(s) 186, 206, 247, 384, 407, 473, 712, 772
CviQI GTAC 5 cut(s) 83, 102, 190, 221, 261
DdeI CTNAG 3 cut(s) 44, 528, 768
DpnI GATC 3 cut(s) 273, 321, 417
DpnII GATC 3 cut(s) 271, 319, 415
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 283
Eco57I CTGAAG 2 cut(s) 30, 336
Eco88I CYCGRG 2 cut(s) 134, 207
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 433, 645
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 3 cut(s) 24, 102, 758
FaqI GGGAC 1 cut(s) 296
FatI CATG 3 cut(s) 20, 98, 754
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 2 cut(s) 471, 689
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 2 cut(s) 471, 689
GlaI GCGC 1 cut(s) 482
GluI GCNGC 2 cut(s) 471, 689
HaeIII GGCC 2 cut(s) 186, 247
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 483
Hin1II CATG 3 cut(s) 24, 102, 758
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 4 cut(s) 50, 128, 212, 667
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 41, 502
Hpy166II GTNNAC 2 cut(s) 466, 617
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 466, 617
HpyAV CCTTC 3 cut(s) 20, 32, 713
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 3 cut(s) 85, 439, 684
HpyCH4V TGCA 4 cut(s) 296, 542, 593, 716
HpyF3I CTNAG 3 cut(s) 44, 528, 768
HpySE526I ACGT 3 cut(s) 85, 439, 684
Hsp92II CATG 3 cut(s) 24, 102, 758
HspAI GCGC 1 cut(s) 481
Kzo9I GATC 3 cut(s) 271, 319, 415
LmnI GCTCC 1 cut(s) 709
LpnPI CCDG 9 cut(s) 51, 200, 327, 420, 447, 561, 617, 632, 659
Lsp1109I GCAGC 2 cut(s) 482, 675
LweI GCATC 1 cut(s) 634
MaeII ACGT 3 cut(s) 85, 439, 684
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 273, 321, 417
MbiI CCGCTC 1 cut(s) 229
MboI GATC 3 cut(s) 271, 319, 415
MboII GAAGA 7 cut(s) 23, 125, 314, 329, 544, 647, 686
MflI RGATCY 2 cut(s) 271, 319
MluCI AATT 4 cut(s) 142, 179, 522, 535
MnlI CCTC 4 cut(s) 143, 336, 345, 583
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 3 cut(s) 267, 399, 775
MspA1I CMGCKG 1 cut(s) 473
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 2 cut(s) 435, 647
MvaI CCWGG 2 cut(s) 435, 647
MvnI CGCG 1 cut(s) 483
NdeII GATC 3 cut(s) 271, 319, 415
NlaIII CATG 3 cut(s) 24, 102, 758
NlaIV GGNNCC 2 cut(s) 284, 580
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 102
PaeR7I CTCGAG 2 cut(s) 134, 207
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 4 cut(s) 50, 128, 212, 667
PkrI GCNGC 2 cut(s) 472, 690
Ppu21I YACGTR 2 cut(s) 86, 685
PscI ACATGT 1 cut(s) 98
Psp6I CCWGG 2 cut(s) 433, 645
PspGI CCWGG 2 cut(s) 433, 645
PspN4I GGNNCC 2 cut(s) 284, 580
PspPI GGNCC 1 cut(s) 283
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 2 cut(s) 271, 319
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 5 cut(s) 84, 103, 191, 222, 262
RsaNI GTAC 5 cut(s) 83, 102, 190, 221, 261
SaqAI TTAA 3 cut(s) 267, 399, 775
SatI GCNGC 2 cut(s) 471, 689
Sau3AI GATC 3 cut(s) 271, 319, 415
Sau96I GGNCC 1 cut(s) 283
ScaI AGTACT 1 cut(s) 262
ScrFI CCNGG 2 cut(s) 435, 647
SfaNI GCATC 1 cut(s) 634
Sfr274I CTCGAG 2 cut(s) 134, 207
SinI GGWCC 1 cut(s) 283
SlaI CTCGAG 2 cut(s) 134, 207
SmlI CTYRAG 4 cut(s) 134, 207, 256, 398
SmoI CTYRAG 4 cut(s) 134, 207, 256, 398
Sse9I AATT 4 cut(s) 142, 179, 522, 535
SsiI CCGC 1 cut(s) 227
SspI AATATT 2 cut(s) 374, 497
StyD4I CCNGG 2 cut(s) 433, 645
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 3 cut(s) 88, 442, 687
TaqI TCGA 5 cut(s) 135, 208, 547, 601, 697
TasI AATT 4 cut(s) 142, 179, 522, 535
TatI WGTACW 3 cut(s) 101, 220, 260
TfiI GAWTC 4 cut(s) 50, 128, 212, 667
Tru1I TTAA 3 cut(s) 267, 399, 775
Tru9I TTAA 3 cut(s) 267, 399, 775
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 470, 688
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 4 cut(s) 9, 674, 717, 771
TspGWI ACGGA 1 cut(s) 722
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 2 cut(s) 179, 535
XceI RCATGY 1 cut(s) 102
XhoI CTCGAG 2 cut(s) 134, 207
XmnI GAANNNNTTC 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.