Rh2BG597600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001007
Physical Location & Seq
Reverse (-)
81939059 .. 81942919
3861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG597600.1

Sequence Viewer

Length: 591 bp
ATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACGTCACAGAGTTCGTGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCACTTGCAGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAAGCACATGTGCAGCAAGTTCAAACTCAGGAACAACTCTTGAAAACCCAACAAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCGCAACAATCTTCTCAACCTTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCCTCAAATGTACTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCACTGGACTAAATGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTGAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCGTGGATATGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

196

Amino Acids

22.45

Weight (kDa)

6.15

Isoelectric Point (pI)

75.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AciI CCGC 1 cut(s) 434
AfaI GTAC 2 cut(s) 242, 422
AfiI CCNNNNNNNGG 1 cut(s) 485
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 5 cut(s) 35, 155, 272, 292, 541
AluBI AGCT 4 cut(s) 168, 547, 554, 570
AluI AGCT 4 cut(s) 168, 547, 554, 570
Alw26I GTCTC 1 cut(s) 38
AoxI GGCC 1 cut(s) 425
ApeKI GCWGC 2 cut(s) 262, 379
AspS9I GGNCC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 86
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanI GGYRCC 1 cut(s) 142
BauI CACGAG 1 cut(s) 573
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 2 cut(s) 274, 391
BccI CCATC 3 cut(s) 76, 155, 394
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 48
BglII AGATCT 1 cut(s) 438
BisI GCNGC 2 cut(s) 263, 380
BlsI GCNGC 2 cut(s) 264, 381
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 87, 144
BmsI GCATC 2 cut(s) 45, 387
BpiI GAAGAC 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse1I ACTGG 2 cut(s) 428, 490
Bse3DI GCAATG 1 cut(s) 318
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 81, 290
BseNI ACTGG 2 cut(s) 428, 490
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 2 cut(s) 274, 391
BseYI CCCAGC 1 cut(s) 336
BsgI GTGCAG 1 cut(s) 281
BshFI GGCC 1 cut(s) 427
BshNI GGYRCC 1 cut(s) 142
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 1 cut(s) 427
Bsp143I GATC 2 cut(s) 182, 438
BspACI CCGC 1 cut(s) 434
BspANI GGCC 1 cut(s) 427
BspCNI CTCAG 2 cut(s) 82, 289
BspLI GGNNCC 2 cut(s) 87, 144
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 318
BsrI ACTGG 2 cut(s) 428, 490
BssMI GATC 2 cut(s) 182, 438
BssSI CACGAG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 573
BstAPI GCANNNNNTGC 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 90, 276, 548
BstF5I GGATG 1 cut(s) 386
BstKTI GATC 2 cut(s) 185, 441
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 182, 438
BstMWI GCNNNNNNNGC 3 cut(s) 74, 433, 460
BstNSI RCATGY 2 cut(s) 260, 473
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 274, 391
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 1 cut(s) 438
BstYI RGATCY 1 cut(s) 438
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 1 cut(s) 386
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 483
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 241, 421
CviAII CATG 3 cut(s) 188, 257, 470
CviJI RGCY 6 cut(s) 168, 427, 463, 547, 554, 570
CviKI_1 RGCY 6 cut(s) 168, 427, 463, 547, 554, 570
CviQI GTAC 2 cut(s) 241, 421
DdeI CTNAG 3 cut(s) 90, 276, 548
DpnI GATC 2 cut(s) 184, 440
DpnII GATC 2 cut(s) 182, 438
Eco47I GGWCC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 86
FaeI CATG 3 cut(s) 191, 260, 473
FaqI GGGAC 1 cut(s) 99
FatI CATG 3 cut(s) 187, 256, 469
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 2 cut(s) 263, 380
FokI GGATG 1 cut(s) 373
Fsp4HI GCNGC 2 cut(s) 263, 380
FspBI CTAG 1 cut(s) 122
GluI GCNGC 2 cut(s) 263, 380
GsaI CCCAGC 1 cut(s) 340
HaeIII GGCC 1 cut(s) 427
Hin1II CATG 3 cut(s) 191, 260, 473
HinfI GANTC 2 cut(s) 233, 562
Hpy188III TCNNGA 3 cut(s) 278, 289, 394
HpyAV CCTTC 4 cut(s) 29, 363, 400, 411
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 4, 77, 211, 262, 379
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 433, 460
HpyF3I CTNAG 3 cut(s) 90, 276, 548
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 3 cut(s) 191, 260, 473
Kzo9I GATC 2 cut(s) 182, 438
LpnPI CCDG 8 cut(s) 102, 147, 263, 350, 407, 409, 471, 557
Lsp1109I GCAGC 2 cut(s) 274, 391
LweI GCATC 2 cut(s) 45, 387
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 98, 213
MalI GATC 2 cut(s) 184, 440
MboI GATC 2 cut(s) 182, 438
MboII GAAGA 3 cut(s) 143, 204, 357
MflI RGATCY 1 cut(s) 438
MluCI AATT 4 cut(s) 21, 156, 218, 305
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 5 cut(s) 420, 423, 438, 456, 474
MseI TTAA 1 cut(s) 317
MwoI GCNNNNNNNGC 3 cut(s) 74, 433, 460
NdeI CATATG 1 cut(s) 70
NdeII GATC 2 cut(s) 182, 438
NlaIII CATG 3 cut(s) 191, 260, 473
NlaIV GGNNCC 2 cut(s) 87, 144
NmuCI GTSAC 2 cut(s) 98, 213
NspI RCATGY 2 cut(s) 260, 473
PciI ACATGT 1 cut(s) 256
PfeI GAWTC 1 cut(s) 562
PkrI GCNGC 2 cut(s) 264, 381
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 86
PscI ACATGT 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 87, 144
PspPI GGNCC 1 cut(s) 86
PspPPI RGGWCCY 1 cut(s) 86
PsuI RGATCY 1 cut(s) 438
RsaI GTAC 2 cut(s) 242, 422
RsaNI GTAC 2 cut(s) 241, 421
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 263, 380
Sau3AI GATC 2 cut(s) 182, 438
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 242
SfaNI GCATC 2 cut(s) 45, 387
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 86
Sse9I AATT 4 cut(s) 21, 156, 218, 305
SsiI CCGC 1 cut(s) 434
SspMI CTAG 1 cut(s) 122
TaiI ACGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 560
TasI AATT 4 cut(s) 21, 156, 218, 305
TatI WGTACW 1 cut(s) 420
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 2 cut(s) 84, 490
TseFI GTSAC 2 cut(s) 98, 213
TseI GCWGC 2 cut(s) 262, 379
Tsp45I GTSAC 2 cut(s) 98, 213
TspDTI ATGAA 1 cut(s) 546
TspRI CASTG 2 cut(s) 84, 490
VpaK11BI GGWCC 1 cut(s) 86
XceI RCATGY 2 cut(s) 260, 473
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.