Rh6BG234200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001007
Physical Location & Seq
Reverse (-)
44067484 .. 44069086
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG234200.1

Sequence Viewer

Length: 840 bp
ATGGTGAAATATTGGGATACTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTGGCACCAAGACTTATGCACGCAGTCGAGCAGAATATCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTATGATAAGCATACACGGAATGACAAAGAAAAAACCTGGATTGATGAAGTTGCTGAGCGGACACATGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACATCATAGAGTTCGTGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCACTTGCAGTCACAGTTTATGGAGTTAGAGTCCAAGTACCAACAACAACAACAGCAAGCACAGGTGCAGCAAGTTCAAACTCAGGAACAACTCTTGCAAACCCAACAAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCGCAACAATCTTCTCAGTCTTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCCTCAAATGTACTGGCCTCAACCACAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCACTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTGAACCAACTTAGAGCTTCATCGAATCAAAGCTCTCGTGGATCTGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

279

Amino Acids

32.23

Weight (kDa)

6.64

Isoelectric Point (pI)

63.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 1 - 122 1.1e-22 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 92, 382
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 1 cut(s) 226
AclWI GGATC 2 cut(s) 146, 835
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 2 cut(s) 482, 671
AfiI CCNNNNNNNGG 1 cut(s) 734
AgsI TTSAA 4 cut(s) 275, 395, 521, 790
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 3 cut(s) 408, 803, 819
AluI AGCT 3 cut(s) 408, 803, 819
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 2 cut(s) 146, 835
AoxI GGCC 1 cut(s) 674
ApeKI GCWGC 2 cut(s) 511, 628
ApoI RAATTY 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 753, 786
BanI GGYRCC 2 cut(s) 92, 382
BanII GRGCYC 1 cut(s) 150
BauI CACGAG 1 cut(s) 822
BbsI GAAGAC 1 cut(s) 439
BbvI GCAGC 2 cut(s) 523, 640
BccI CCATC 3 cut(s) 316, 395, 643
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 288
BfuI GTATCC 1 cut(s) 10
BglII AGATCT 1 cut(s) 687
BisI GCNGC 2 cut(s) 512, 629
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 2 cut(s) 513, 630
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 3 cut(s) 94, 327, 384
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 2 cut(s) 285, 636
BpiI GAAGAC 1 cut(s) 439
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 734
Bse1I ACTGG 3 cut(s) 677, 739, 748
Bse3DI GCAATG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 635
BseLI CCNNNNNNNGG 1 cut(s) 734
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 6 cut(s) 33, 213, 321, 539, 632, 822
BseNI ACTGG 3 cut(s) 677, 739, 748
BseRI GAGGAG 1 cut(s) 651
BseXI GCAGC 2 cut(s) 523, 640
BseYI CCCAGC 1 cut(s) 585
BsgI GTGCAG 1 cut(s) 530
BshFI GGCC 1 cut(s) 676
BshNI GGYRCC 2 cut(s) 92, 382
BslFI GGGAC 1 cut(s) 339
BslI CCNNNNNNNGG 1 cut(s) 734
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 339
BsnI GGCC 1 cut(s) 676
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 4 cut(s) 151, 422, 687, 827
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 676
BspCNI CTCAG 6 cut(s) 34, 214, 322, 538, 631, 823
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 94, 327, 384
BspPI GGATC 2 cut(s) 146, 835
BspT107I GGYRCC 2 cut(s) 92, 382
BsrBI CCGCTC 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 567
BsrI ACTGG 3 cut(s) 677, 739, 748
BssMI GATC 4 cut(s) 151, 422, 687, 827
BssSI CACGAG 1 cut(s) 822
Bst2BI CACGAG 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 34, 459
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 2 cut(s) 109, 501
BstDEI CTNAG 7 cut(s) 42, 222, 330, 525, 618, 797, 831
BstF5I GGATG 1 cut(s) 635
BstKTI GATC 4 cut(s) 154, 425, 690, 830
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 4 cut(s) 151, 422, 687, 827
BstMWI GCNNNNNNNGC 2 cut(s) 314, 709
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 2 cut(s) 236, 722
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 523, 640
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 2 cut(s) 687, 827
BstYI RGATCY 2 cut(s) 687, 827
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 1 cut(s) 676
BtsCI GGATG 1 cut(s) 635
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 324, 732
Cac8I GCNNGC 2 cut(s) 109, 501
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 2 cut(s) 481, 670
CviAII CATG 5 cut(s) 137, 143, 233, 428, 719
CviJI RGCY 6 cut(s) 148, 408, 676, 712, 803, 819
CviKI_1 RGCY 6 cut(s) 148, 408, 676, 712, 803, 819
CviQI GTAC 2 cut(s) 481, 670
DdeI CTNAG 7 cut(s) 42, 222, 330, 525, 618, 797, 831
DpnI GATC 4 cut(s) 153, 424, 689, 829
DpnII GATC 4 cut(s) 151, 422, 687, 827
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 5 cut(s) 140, 146, 236, 431, 722
FaqI GGGAC 1 cut(s) 339
FatI CATG 5 cut(s) 136, 142, 232, 427, 718
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 2 cut(s) 512, 629
FokI GGATG 1 cut(s) 622
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 512, 629
FspBI CTAG 1 cut(s) 362
GluI GCNGC 2 cut(s) 512, 629
GsaI CCCAGC 1 cut(s) 589
HaeIII GGCC 1 cut(s) 676
Hin1II CATG 5 cut(s) 140, 146, 236, 431, 722
HinfI GANTC 2 cut(s) 473, 811
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 832
Hpy188III TCNNGA 4 cut(s) 130, 143, 527, 643
HpyAV CCTTC 4 cut(s) 269, 612, 649, 660
HpyCH4III ACNGT 2 cut(s) 34, 459
HpyCH4V TGCA 8 cut(s) 56, 107, 244, 317, 451, 511, 541, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 709
HpyF3I CTNAG 7 cut(s) 42, 222, 330, 525, 618, 797, 831
Hsp92II CATG 5 cut(s) 140, 146, 236, 431, 722
Kzo9I GATC 4 cut(s) 151, 422, 687, 827
Lsp1109I GCAGC 2 cut(s) 523, 640
LweI GCATC 2 cut(s) 285, 636
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 453
MalI GATC 4 cut(s) 153, 424, 689, 829
MbiI CCGCTC 1 cut(s) 226
MboI GATC 4 cut(s) 151, 422, 687, 827
MboII GAAGA 4 cut(s) 58, 383, 444, 606
MflI RGATCY 2 cut(s) 687, 827
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 5 cut(s) 36, 49, 261, 396, 554
MlyI GAGTC 1 cut(s) 482
MnlI CCTC 6 cut(s) 97, 669, 672, 687, 705, 723
MseI TTAA 1 cut(s) 566
MslI CAYNNNNRTG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 2 cut(s) 314, 709
NdeI CATATG 1 cut(s) 310
NdeII GATC 4 cut(s) 151, 422, 687, 827
NlaIII CATG 5 cut(s) 140, 146, 236, 431, 722
NlaIV GGNNCC 3 cut(s) 94, 327, 384
NmuCI GTSAC 1 cut(s) 453
NspI RCATGY 2 cut(s) 236, 722
PagI TCATGA 1 cut(s) 142
PfeI GAWTC 1 cut(s) 811
PkrI GCNGC 2 cut(s) 513, 630
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PpuMI RGGWCCY 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 585
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 3 cut(s) 94, 327, 384
PspPI GGNCC 1 cut(s) 326
PspPPI RGGWCCY 1 cut(s) 326
PsuI RGATCY 2 cut(s) 687, 827
RsaI GTAC 2 cut(s) 482, 671
RsaNI GTAC 2 cut(s) 481, 670
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 2 cut(s) 512, 629
Sau3AI GATC 4 cut(s) 151, 422, 687, 827
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 150
SfaNI GCATC 2 cut(s) 285, 636
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 5 cut(s) 36, 49, 261, 396, 554
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 203
TaaI ACNGT 2 cut(s) 34, 459
TaqI TCGA 3 cut(s) 61, 115, 809
TasI AATT 5 cut(s) 36, 49, 261, 396, 554
TatI WGTACW 1 cut(s) 669
TfiI GAWTC 1 cut(s) 811
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 2 cut(s) 324, 739
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 2 cut(s) 511, 628
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 2 cut(s) 228, 795
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 2 cut(s) 324, 739
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 49
XceI RCATGY 2 cut(s) 236, 722
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.