Rw3G029330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001007
Physical Location & Seq
Forward (+)
45130283 .. 45132548
2266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029330.1

Sequence Viewer

Length: 1326 bp
ATGAGTTCTGAAGATAGTTCATGGGAAGGTGATATAGAAGGACTAAGTGATTCTGCTAATGGCACAGGCAAAACTACCAAAGTACGTGGTAAAGGAACATGTACTTGGATGGAAGATAACAAAAAAGAATCCCTCGAGTTCAATTCTATGGGTGTTAGTGTAGGTTCTAATGATGGAAAATTTGGCCGGTACTTGGGTGGGTTAGCTCGAGATTCTAATGTACTCCCGCTCGTCACTAAACCTTGGCCTAAAGTCTCAAGTACTATTAAAGATCCCTTATGGGACCAAATATATGCAACTATTGAATGGAAACCTGAAGATCTTCCTCGTATGCCTCTCATAAAGCATAACATAATGGAAAGAGTTGTTAAATATTGGAGAAGCTACAAGAACAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCACACCAGGACGTTGGGTGTGTGGAAATAAAGATGTCAACGCAGCTGAATGGCGCGAAATGGTGAAATATTGGGATACTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTGGCACCAAGAGTTATGCACGCAGTCGAGCAGAATATCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTATGACAAGCATACACGGAATGACAAAGAAAAAACCTGGATTGATGAAGTTGCTGAGCGGACACATGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACGTCACAGAGTTCGCGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCAATTGCAGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAACAAGAGCAGGCACAGGTGCAGCAAGTTCAAACTCAGGAACAACTCTTGCAAACCCAACAAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCACAACAATCTTCTCAGTCTTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCCTCAAATGTACTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGTTTATCCTACCACTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTGAACCAGCTTAGAGCTTCATCAAATCAAAGCTCTCGTGGATCTGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

441

Amino Acids

50.62

Weight (kDa)

8.22

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 158 - 284 6.3e-25 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 578, 868
AccBSI CCGCTC 2 cut(s) 229, 712
AccII CGCG 2 cut(s) 483, 837
AciI CCGC 4 cut(s) 227, 712, 837, 1169
AclWI GGATC 4 cut(s) 266, 410, 632, 1321
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 179, 535
AcuI CTGAAG 2 cut(s) 30, 336
AfaI GTAC 7 cut(s) 84, 103, 191, 222, 262, 968, 1157
AfiI CCNNNNNNNGG 3 cut(s) 193, 425, 1220
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 2 cut(s) 98, 1204
AgsI TTSAA 6 cut(s) 142, 305, 761, 881, 1007, 1276
AjnI CCWGG 2 cut(s) 433, 689
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 8 cut(s) 206, 384, 407, 473, 894, 1282, 1289, 1305
AluI AGCT 8 cut(s) 206, 384, 407, 473, 894, 1282, 1289, 1305
Alw26I GTCTC 2 cut(s) 259, 764
AlwI GGATC 4 cut(s) 266, 410, 632, 1321
Ama87I CYCGRG 2 cut(s) 134, 207
AoxI GGCC 3 cut(s) 184, 245, 1160
ApeKI GCWGC 3 cut(s) 470, 997, 1114
ApoI RAATTY 2 cut(s) 179, 535
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 283, 812
AsuHPI GGTGA 2 cut(s) 41, 502
AvaI CYCGRG 2 cut(s) 134, 207
AvaII GGWCC 2 cut(s) 283, 812
BaeI ACNNNNGTAYC 4 cut(s) 181, 214, 1239, 1272
BanI GGYRCC 2 cut(s) 578, 868
BanII GRGCYC 1 cut(s) 636
BauI CACGAG 1 cut(s) 1308
BbsI GAAGAC 1 cut(s) 925
BbvI GCAGC 3 cut(s) 482, 1009, 1126
BccI CCATC 5 cut(s) 103, 167, 802, 881, 1129
BciT130I CCWGG 2 cut(s) 435, 691
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 2 cut(s) 259, 764
BfaI CTAG 1 cut(s) 848
BfmI CTRYAG 1 cut(s) 774
BfrI CTTAAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 496
BglII AGATCT 2 cut(s) 319, 1173
BisI GCNGC 3 cut(s) 471, 998, 1115
BlpI GCTNAGC 1 cut(s) 708
BlsI GCNGC 3 cut(s) 472, 999, 1116
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 435, 691
Bme18I GGWCC 2 cut(s) 283, 812
BmeT110I CYCGRG 2 cut(s) 134, 207
BmgT120I GGNCC 2 cut(s) 283, 812
BmiI GGNNCC 4 cut(s) 284, 580, 813, 870
BmrFI CCNGG 2 cut(s) 435, 691
BmsI GCATC 2 cut(s) 771, 1122
BpiI GAAGAC 1 cut(s) 925
Bpu1102I GCTNAGC 1 cut(s) 708
BpuEI CTTGAG 2 cut(s) 241, 599
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 944, 974
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 425, 1220
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 3 cut(s) 1163, 1225, 1234
Bse3DI GCAATG 1 cut(s) 1053
BseBI CCWGG 2 cut(s) 435, 691
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 114, 1121
BseLI CCNNNNNNNGG 3 cut(s) 193, 425, 1220
BseMI GCAATG 1 cut(s) 1053
BseMII CTCAG 6 cut(s) 519, 699, 807, 1025, 1118, 1308
BseNI ACTGG 3 cut(s) 1163, 1225, 1234
BseRI GAGGAG 1 cut(s) 1137
BseXI GCAGC 3 cut(s) 482, 1009, 1126
BseYI CCCAGC 1 cut(s) 1071
BsgI GTGCAG 1 cut(s) 1016
Bsh1236I CGCG 2 cut(s) 483, 837
BshFI GGCC 3 cut(s) 186, 247, 1162
BshNI GGYRCC 2 cut(s) 578, 868
BsiHKCI CYCGRG 2 cut(s) 134, 207
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 296, 825
BslI CCNNNNNNNGG 3 cut(s) 193, 425, 1220
BsmAI GTCTC 2 cut(s) 259, 764
BsmFI GGGAC 2 cut(s) 296, 825
BsnI GGCC 3 cut(s) 186, 247, 1162
BsoBI CYCGRG 2 cut(s) 134, 207
Bsp1286I GDGCHC 1 cut(s) 636
Bsp143I GATC 7 cut(s) 271, 319, 415, 637, 908, 1173, 1313
Bsp1720I GCTNAGC 1 cut(s) 708
BspACI CCGC 4 cut(s) 227, 712, 837, 1169
BspANI GGCC 3 cut(s) 186, 247, 1162
BspCNI CTCAG 6 cut(s) 520, 700, 808, 1024, 1117, 1309
BspFNI CGCG 2 cut(s) 483, 837
BspHI TCATGA 1 cut(s) 628
BspLI GGNNCC 4 cut(s) 284, 580, 813, 870
BspPI GGATC 4 cut(s) 266, 410, 632, 1321
BspT107I GGYRCC 2 cut(s) 578, 868
BspTI CTTAAG 1 cut(s) 398
BsrBI CCGCTC 2 cut(s) 229, 712
BsrDI GCAATG 1 cut(s) 1053
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 3 cut(s) 1163, 1225, 1234
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 7 cut(s) 271, 319, 415, 637, 908, 1173, 1313
BssSI CACGAG 1 cut(s) 1308
BssT1I CCWWGG 1 cut(s) 242
Bst2BI CACGAG 1 cut(s) 1308
Bst2UI CCWGG 2 cut(s) 435, 691
Bst4CI ACNGT 1 cut(s) 520
BstAFI CTTAAG 1 cut(s) 398
BstAPI GCANNNNNTGC 1 cut(s) 800
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 595, 987
BstDEI CTNAG 8 cut(s) 44, 528, 708, 816, 1011, 1104, 1283, 1317
BstF5I GGATG 2 cut(s) 114, 1121
BstFNI CGCG 2 cut(s) 483, 837
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 7 cut(s) 274, 322, 418, 640, 911, 1176, 1316
BstMAI GTCTC 2 cut(s) 259, 764
BstMBI GATC 7 cut(s) 271, 319, 415, 637, 908, 1173, 1313
BstMWI GCNNNNNNNGC 3 cut(s) 800, 1168, 1195
BstNI CCWGG 2 cut(s) 435, 691
BstNSI RCATGY 3 cut(s) 102, 722, 1208
BstSCI CCNGG 2 cut(s) 433, 689
BstSFI CTRYAG 1 cut(s) 774
BstUI CGCG 2 cut(s) 483, 837
BstV1I GCAGC 3 cut(s) 482, 1009, 1126
BstV2I GAAGAC 1 cut(s) 925
BstX2I RGATCY 4 cut(s) 271, 319, 1173, 1313
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 4 cut(s) 271, 319, 1173, 1313
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 3 cut(s) 186, 247, 1162
BtsCI GGATG 2 cut(s) 114, 1121
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 2 cut(s) 810, 1218
Cac8I GCNNGC 2 cut(s) 595, 987
CciI TCATGA 1 cut(s) 628
CfoI GCGC 1 cut(s) 483
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 283, 812
Csp6I GTAC 7 cut(s) 83, 102, 190, 221, 261, 967, 1156
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 7 cut(s) 21, 99, 623, 629, 719, 914, 1205
CviQI GTAC 7 cut(s) 83, 102, 190, 221, 261, 967, 1156
DdeI CTNAG 8 cut(s) 44, 528, 708, 816, 1011, 1104, 1283, 1317
DpnI GATC 7 cut(s) 273, 321, 417, 639, 910, 1175, 1315
DpnII GATC 7 cut(s) 271, 319, 415, 637, 908, 1173, 1313
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 636
Eco47I GGWCC 2 cut(s) 283, 812
Eco57I CTGAAG 2 cut(s) 30, 336
Eco88I CYCGRG 2 cut(s) 134, 207
EcoO109I RGGNCCY 1 cut(s) 812
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 2 cut(s) 433, 689
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 7 cut(s) 24, 102, 626, 632, 722, 917, 1208
FaqI GGGAC 2 cut(s) 296, 825
FatI CATG 7 cut(s) 20, 98, 622, 628, 718, 913, 1204
FauI CCCGC 1 cut(s) 234
FauNDI CATATG 1 cut(s) 796
Fnu4HI GCNGC 3 cut(s) 471, 998, 1115
FokI GGATG 2 cut(s) 121, 1108
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 3 cut(s) 471, 998, 1115
FspBI CTAG 1 cut(s) 848
GlaI GCGC 1 cut(s) 482
GluI GCNGC 3 cut(s) 471, 998, 1115
GsaI CCCAGC 1 cut(s) 1075
HaeIII GGCC 3 cut(s) 186, 247, 1162
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 483
Hin1II CATG 7 cut(s) 24, 102, 626, 632, 722, 917, 1208
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 4 cut(s) 50, 128, 212, 959
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 41, 502
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 2 cut(s) 10, 1318
Hpy188III TCNNGA 5 cut(s) 209, 616, 629, 1013, 1129
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 6 cut(s) 20, 32, 755, 1098, 1135, 1146
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 3 cut(s) 85, 439, 823
HpyCH4V TGCA 9 cut(s) 296, 542, 593, 730, 803, 937, 997, 1027, 1114
HpyF10VI GCNNNNNNNGC 3 cut(s) 800, 1168, 1195
HpyF3I CTNAG 8 cut(s) 44, 528, 708, 816, 1011, 1104, 1283, 1317
HpySE526I ACGT 3 cut(s) 85, 439, 823
Hsp92II CATG 7 cut(s) 24, 102, 626, 632, 722, 917, 1208
HspAI GCGC 1 cut(s) 481
Kzo9I GATC 7 cut(s) 271, 319, 415, 637, 908, 1173, 1313
Lsp1109I GCAGC 3 cut(s) 482, 1009, 1126
LweI GCATC 2 cut(s) 771, 1122
MaeI CTAG 1 cut(s) 848
MaeII ACGT 3 cut(s) 85, 439, 823
MaeIII GTNAC 3 cut(s) 232, 824, 939
MalI GATC 7 cut(s) 273, 321, 417, 639, 910, 1175, 1315
MbiI CCGCTC 2 cut(s) 229, 712
MboI GATC 7 cut(s) 271, 319, 415, 637, 908, 1173, 1313
MboII GAAGA 8 cut(s) 23, 125, 314, 329, 544, 869, 930, 1092
MfeI CAATTG 1 cut(s) 932
MflI RGATCY 4 cut(s) 271, 319, 1173, 1313
MhlI GDGCHC 1 cut(s) 636
MluCI AATT 9 cut(s) 142, 179, 522, 535, 747, 882, 932, 944, 1040
MlyI GAGTC 1 cut(s) 968
MnlI CCTC 9 cut(s) 143, 336, 345, 583, 1155, 1158, 1173, 1191, 1209
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 4 cut(s) 267, 369, 399, 1052
MslI CAYNNNNRTG 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 473
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 2 cut(s) 435, 691
MunI CAATTG 1 cut(s) 932
MvaI CCWGG 2 cut(s) 435, 691
MvnI CGCG 2 cut(s) 483, 837
MwoI GCNNNNNNNGC 3 cut(s) 800, 1168, 1195
NdeI CATATG 1 cut(s) 796
NdeII GATC 7 cut(s) 271, 319, 415, 637, 908, 1173, 1313
NlaIII CATG 7 cut(s) 24, 102, 626, 632, 722, 917, 1208
NlaIV GGNNCC 4 cut(s) 284, 580, 813, 870
NmuCI GTSAC 3 cut(s) 232, 824, 939
NspI RCATGY 3 cut(s) 102, 722, 1208
PaeR7I CTCGAG 2 cut(s) 134, 207
PagI TCATGA 1 cut(s) 628
PciI ACATGT 2 cut(s) 98, 1204
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 50, 128, 212
PkrI GCNGC 3 cut(s) 472, 999, 1116
PleI GAGTC 1 cut(s) 967
PpsI GAGTC 1 cut(s) 967
Ppu21I YACGTR 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 812
PscI ACATGT 2 cut(s) 98, 1204
Psp5II RGGWCCY 1 cut(s) 812
Psp6I CCWGG 2 cut(s) 433, 689
PspFI CCCAGC 1 cut(s) 1071
PspGI CCWGG 2 cut(s) 433, 689
PspN4I GGNNCC 4 cut(s) 284, 580, 813, 870
PspPI GGNCC 2 cut(s) 283, 812
PspPPI RGGWCCY 1 cut(s) 812
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 4 cut(s) 271, 319, 1173, 1313
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 7 cut(s) 84, 103, 191, 222, 262, 968, 1157
RsaNI GTAC 7 cut(s) 83, 102, 190, 221, 261, 967, 1156
RseI CAYNNNNRTG 1 cut(s) 627
SaqAI TTAA 4 cut(s) 267, 369, 399, 1052
SatI GCNGC 3 cut(s) 471, 998, 1115
Sau3AI GATC 7 cut(s) 271, 319, 415, 637, 908, 1173, 1313
Sau96I GGNCC 2 cut(s) 283, 812
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 968
ScrFI CCNGG 2 cut(s) 435, 691
SduI GDGCHC 1 cut(s) 636
SfaNI GCATC 2 cut(s) 771, 1122
SfcI CTRYAG 1 cut(s) 774
Sfr274I CTCGAG 2 cut(s) 134, 207
SinI GGWCC 2 cut(s) 283, 812
SlaI CTCGAG 2 cut(s) 134, 207
SmiMI CAYNNNNRTG 1 cut(s) 627
SmlI CTYRAG 5 cut(s) 134, 207, 256, 398, 614
SmoI CTYRAG 5 cut(s) 134, 207, 256, 398, 614
Sse9I AATT 9 cut(s) 142, 179, 522, 535, 747, 882, 932, 944, 1040
SsiI CCGC 4 cut(s) 227, 712, 837, 1169
SspI AATATT 2 cut(s) 374, 497
SspMI CTAG 1 cut(s) 848
StyD4I CCNGG 2 cut(s) 433, 689
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 3 cut(s) 88, 442, 826
TaqI TCGA 4 cut(s) 135, 208, 547, 601
TasI AATT 9 cut(s) 142, 179, 522, 535, 747, 882, 932, 944, 1040
TatI WGTACW 4 cut(s) 101, 220, 260, 1155
TfiI GAWTC 3 cut(s) 50, 128, 212
Tru1I TTAA 4 cut(s) 267, 369, 399, 1052
Tru9I TTAA 4 cut(s) 267, 369, 399, 1052
TscAI CASTG 2 cut(s) 810, 1225
TseFI GTSAC 3 cut(s) 232, 824, 939
TseI GCWGC 3 cut(s) 470, 997, 1114
Tsp45I GTSAC 3 cut(s) 232, 824, 939
TspDTI ATGAA 3 cut(s) 9, 714, 1281
TspGWI ACGGA 1 cut(s) 685
TspRI CASTG 2 cut(s) 810, 1225
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 2 cut(s) 283, 812
XapI RAATTY 2 cut(s) 179, 535
XceI RCATGY 3 cut(s) 102, 722, 1208
XhoI CTCGAG 2 cut(s) 134, 207
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 1 cut(s) 848
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.