Rh2CG568200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001007
Physical Location & Seq
Reverse (-)
74887386 .. 74888783
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG568200.1

Sequence Viewer

Length: 339 bp
ATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACGTCACAGAGTTCGTGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCACTTGCAGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAAGCACATGTGCAGCAAGTTCAAACTCAGGAACAACTCTTGAAAACCCAACAAGAATTGGCAATGTTAAAGCAAATGATACAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

112

Amino Acids

12.92

Weight (kDa)

6.58

Isoelectric Point (pI)

57.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AfaI GTAC 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 4 cut(s) 35, 155, 272, 292
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 274
BccI CCATC 2 cut(s) 76, 155
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 2 cut(s) 122, 337
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 87, 144
BmsI GCATC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 199
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse3DI GCAATG 1 cut(s) 318
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 81, 290
BseXI GCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 142
BslFI GGGAC 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 182
BspCNI CTCAG 2 cut(s) 82, 289
BspLI GGNNCC 2 cut(s) 87, 144
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 318
BssMI GATC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 90, 276
BstKTI GATC 1 cut(s) 185
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 182
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 274
BstV2I GAAGAC 1 cut(s) 199
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 241
CviAII CATG 2 cut(s) 188, 257
CviJI RGCY 1 cut(s) 168
CviKI_1 RGCY 1 cut(s) 168
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 90, 276
DpnI GATC 1 cut(s) 184
DpnII GATC 1 cut(s) 182
Eco47I GGWCC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 86
FaeI CATG 2 cut(s) 191, 260
FaiI YATR 8 cut(s) 70, 72, 117, 140, 189, 201, 224, 258
FaqI GGGAC 1 cut(s) 99
FatI CATG 2 cut(s) 187, 256
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 2 cut(s) 122, 337
GluI GCNGC 1 cut(s) 263
Hin1II CATG 2 cut(s) 191, 260
HinfI GANTC 1 cut(s) 233
Hpy188III TCNNGA 2 cut(s) 278, 289
HpyAV CCTTC 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 4, 77, 211, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 90, 276
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 2 cut(s) 191, 260
Kzo9I GATC 1 cut(s) 182
LpnPI CCDG 3 cut(s) 102, 147, 263
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 1 cut(s) 45
MaeI CTAG 2 cut(s) 122, 337
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 98, 213
MalI GATC 1 cut(s) 184
MboI GATC 1 cut(s) 182
MboII GAAGA 2 cut(s) 143, 204
MluCI AATT 4 cut(s) 21, 156, 218, 305
MlyI GAGTC 1 cut(s) 242
MseI TTAA 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeI CATATG 1 cut(s) 70
NdeII GATC 1 cut(s) 182
NlaIII CATG 2 cut(s) 191, 260
NlaIV GGNNCC 2 cut(s) 87, 144
NmuCI GTSAC 2 cut(s) 98, 213
NspI RCATGY 1 cut(s) 260
PciI ACATGT 1 cut(s) 256
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 241
PpsI GAGTC 1 cut(s) 241
PpuMI RGGWCCY 1 cut(s) 86
PscI ACATGT 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 87, 144
PspPI GGNCC 1 cut(s) 86
PspPPI RGGWCCY 1 cut(s) 86
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 182
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 242
SetI ASST 6 cut(s) 40, 91, 100, 127, 136, 170
SfaNI GCATC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 86
Sse9I AATT 4 cut(s) 21, 156, 218, 305
SspMI CTAG 2 cut(s) 122, 337
TaiI ACGT 1 cut(s) 100
TasI AATT 4 cut(s) 21, 156, 218, 305
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 2 cut(s) 98, 213
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 2 cut(s) 98, 213
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 86
XceI RCATGY 1 cut(s) 260
XspI CTAG 2 cut(s) 122, 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.