RLG00000036730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001007
Physical Location & Seq
Reverse (-)
83829612 .. 83831880
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036730

Sequence Viewer

Length: 1194 bp
ATGAGTTCTGAAGATAGTTCATGGGAAGGTGATATAGAAGGACTAAGTGATTCTGCTAATGGCATAGGCAAAACTACCAAAGTACGTGATAAAGGAACATGTACTTGGATGGAAGATAACAAAAAAGAATCCCTCGAGTTCAATTCTATGAGTGTTAGTGTAGGTTCTAATGATGGAAAATTTGGCCGGTACTTGGGTGGGTTAGCTCGAGATTCTAATGTACTTCCACTCGTCACTAAACCTTGGCCTAAAGTCTCAAGTACTATTAAAGATCCCTTATGGGACCAAATATATGCAACTATTGAATGGAAACCTGAAGATCTTCCTCATGTCAACATAGCTGAATGGTGCGAAATGGTGAAATATTGGGATATTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTGGCACCAAGAGTAATGCACGCAGTCGAGCAGAATATCTCAAGAAGCATGGTCATGAGCCCAATCCTATTCAGTTTTTTTATGATAAGCATACACGGAATGATAAAGAAAAAACCTGGATTGATGAAGTTGCTGAGCGGACACATGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTAAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAATGTCACAGAGTTCGCGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGGTGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCACTTGCAGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAACAAGAGCAAGCACAGGTGCAGCACGTTCAAACTCAGGAACAAGTCTTGCAAACCCAACAAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCACAACGATCTTCTCAGCCTTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCCTCAAATGTACTGGCCTCAACTGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCATTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTGAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCATGGATCTGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

398

Amino Acids

45.25

Weight (kDa)

6.18

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 116 - 240 1.3e-20 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 446, 736
AccBSI CCGCTC 1 cut(s) 580
AccII CGCG 1 cut(s) 705
AciI CCGC 2 cut(s) 580, 705
AclWI GGATC 2 cut(s) 266, 1189
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 179, 403
AcuI CTGAAG 2 cut(s) 30, 336
AfaI GTAC 7 cut(s) 84, 103, 191, 222, 262, 836, 1025
AfiI CCNNNNNNNGG 2 cut(s) 193, 1088
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 6 cut(s) 142, 305, 377, 749, 875, 1144
AjnI CCWGG 1 cut(s) 557
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 6 cut(s) 206, 341, 762, 1150, 1157, 1173
AluI AGCT 6 cut(s) 206, 341, 762, 1150, 1157, 1173
Alw26I GTCTC 2 cut(s) 259, 632
AlwI GGATC 2 cut(s) 266, 1189
Ama87I CYCGRG 2 cut(s) 134, 207
AoxI GGCC 3 cut(s) 184, 245, 1028
ApeKI GCWGC 2 cut(s) 865, 982
ApoI RAATTY 2 cut(s) 179, 403
Asp700I GAANNNNTTC 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 283, 680
AsuHPI GGTGA 2 cut(s) 41, 370
AvaI CYCGRG 2 cut(s) 134, 207
AvaII GGWCC 2 cut(s) 283, 680
BaeI ACNNNNGTAYC 4 cut(s) 181, 214, 1107, 1140
BanI GGYRCC 2 cut(s) 446, 736
BanII GRGCYC 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 793
BbvI GCAGC 2 cut(s) 877, 994
BccI CCATC 4 cut(s) 103, 167, 670, 997
BciT130I CCWGG 1 cut(s) 559
BcoDI GTCTC 2 cut(s) 259, 632
BfaI CTAG 1 cut(s) 716
BfmI CTRYAG 2 cut(s) 642, 1037
BglII AGATCT 2 cut(s) 319, 1041
BisI GCNGC 2 cut(s) 866, 983
BlpI GCTNAGC 1 cut(s) 576
BlsI GCNGC 2 cut(s) 867, 984
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 559
Bme18I GGWCC 2 cut(s) 283, 680
BmeT110I CYCGRG 2 cut(s) 134, 207
BmgT120I GGNCC 2 cut(s) 283, 680
BmiI GGNNCC 4 cut(s) 284, 448, 681, 738
BmrFI CCNGG 1 cut(s) 559
BmsI GCATC 2 cut(s) 639, 990
BpiI GAAGAC 1 cut(s) 793
Bpu1102I GCTNAGC 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 241, 467
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 1088
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 2 cut(s) 1031, 1102
Bse3DI GCAATG 1 cut(s) 921
BseBI CCWGG 1 cut(s) 559
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 114, 989
BseLI CCNNNNNNNGG 2 cut(s) 193, 1088
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 6 cut(s) 387, 567, 675, 893, 986, 1176
BseNI ACTGG 2 cut(s) 1031, 1102
BseRI GAGGAG 1 cut(s) 1005
BseXI GCAGC 2 cut(s) 877, 994
BseYI CCCAGC 1 cut(s) 939
BsgI GTGCAG 1 cut(s) 884
Bsh1236I CGCG 1 cut(s) 705
BshFI GGCC 3 cut(s) 186, 247, 1030
BshNI GGYRCC 2 cut(s) 446, 736
BsiHKCI CYCGRG 2 cut(s) 134, 207
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 2 cut(s) 296, 693
BslI CCNNNNNNNGG 2 cut(s) 193, 1088
BsmAI GTCTC 2 cut(s) 259, 632
BsmFI GGGAC 2 cut(s) 296, 693
BsnI GGCC 3 cut(s) 186, 247, 1030
BsoBI CYCGRG 2 cut(s) 134, 207
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 6 cut(s) 271, 319, 776, 965, 1041, 1181
Bsp1720I GCTNAGC 1 cut(s) 576
BspACI CCGC 2 cut(s) 580, 705
BspANI GGCC 3 cut(s) 186, 247, 1030
BspCNI CTCAG 6 cut(s) 388, 568, 676, 892, 985, 1177
BspFNI CGCG 1 cut(s) 705
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 4 cut(s) 284, 448, 681, 738
BspMAI CTGCAG 1 cut(s) 1041
BspPI GGATC 2 cut(s) 266, 1189
BspT107I GGYRCC 2 cut(s) 446, 736
BsrBI CCGCTC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 921
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 2 cut(s) 1031, 1102
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 6 cut(s) 271, 319, 776, 965, 1041, 1181
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 559
Bst4CI ACNGT 1 cut(s) 388
BstAPI GCANNNNNTGC 1 cut(s) 668
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 463, 855
BstDEI CTNAG 8 cut(s) 44, 396, 576, 684, 879, 972, 1151, 1185
BstF5I GGATG 2 cut(s) 114, 989
BstFNI CGCG 1 cut(s) 705
BstKTI GATC 6 cut(s) 274, 322, 779, 968, 1044, 1184
BstMAI GTCTC 2 cut(s) 259, 632
BstMBI GATC 6 cut(s) 271, 319, 776, 965, 1041, 1181
BstMWI GCNNNNNNNGC 4 cut(s) 668, 982, 1036, 1063
BstNI CCWGG 1 cut(s) 559
BstNSI RCATGY 3 cut(s) 102, 590, 1076
BstSCI CCNGG 1 cut(s) 557
BstSFI CTRYAG 2 cut(s) 642, 1037
BstUI CGCG 1 cut(s) 705
BstV1I GCAGC 2 cut(s) 877, 994
BstV2I GAAGAC 1 cut(s) 793
BstX2I RGATCY 4 cut(s) 271, 319, 1041, 1181
BstYI RGATCY 4 cut(s) 271, 319, 1041, 1181
BsuRI GGCC 3 cut(s) 186, 247, 1030
BtsCI GGATG 2 cut(s) 114, 989
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 1 cut(s) 678
Cac8I GCNNGC 2 cut(s) 463, 855
CciI TCATGA 1 cut(s) 496
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 283, 680
Csp6I GTAC 7 cut(s) 83, 102, 190, 221, 261, 835, 1024
CviAII CATG 9 cut(s) 21, 99, 329, 491, 497, 587, 782, 1073, 1178
CviQI GTAC 7 cut(s) 83, 102, 190, 221, 261, 835, 1024
DdeI CTNAG 8 cut(s) 44, 396, 576, 684, 879, 972, 1151, 1185
DpnI GATC 6 cut(s) 273, 321, 778, 967, 1043, 1183
DpnII GATC 6 cut(s) 271, 319, 776, 965, 1041, 1181
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 504
Eco47I GGWCC 2 cut(s) 283, 680
Eco57I CTGAAG 2 cut(s) 30, 336
Eco88I CYCGRG 2 cut(s) 134, 207
EcoO109I RGGNCCY 1 cut(s) 680
EcoRI GAATTC 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 557
EcoT14I CCWWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 9 cut(s) 24, 102, 332, 494, 500, 590, 785, 1076, 1181
FaqI GGGAC 2 cut(s) 296, 693
FatI CATG 9 cut(s) 20, 98, 328, 490, 496, 586, 781, 1072, 1177
FauNDI CATATG 1 cut(s) 664
Fnu4HI GCNGC 2 cut(s) 866, 983
FokI GGATG 2 cut(s) 121, 976
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 2 cut(s) 866, 983
FspBI CTAG 1 cut(s) 716
GluI GCNGC 2 cut(s) 866, 983
GsaI CCCAGC 1 cut(s) 943
HaeIII GGCC 3 cut(s) 186, 247, 1030
HapII CCGG 1 cut(s) 187
Hin1II CATG 9 cut(s) 24, 102, 332, 494, 500, 590, 785, 1076, 1181
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 5 cut(s) 50, 128, 212, 827, 1165
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 41, 370
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 10, 1186
Hpy188III TCNNGA 5 cut(s) 209, 484, 497, 881, 997
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 5 cut(s) 20, 32, 966, 1003, 1014
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4IV ACGT 2 cut(s) 85, 870
HpyF10VI GCNNNNNNNGC 4 cut(s) 668, 982, 1036, 1063
HpyF3I CTNAG 8 cut(s) 44, 396, 576, 684, 879, 972, 1151, 1185
HpySE526I ACGT 2 cut(s) 85, 870
Hsp92II CATG 9 cut(s) 24, 102, 332, 494, 500, 590, 785, 1076, 1181
Kzo9I GATC 6 cut(s) 271, 319, 776, 965, 1041, 1181
Lsp1109I GCAGC 2 cut(s) 877, 994
LweI GCATC 2 cut(s) 639, 990
MaeI CTAG 1 cut(s) 716
MaeII ACGT 2 cut(s) 85, 870
MaeIII GTNAC 3 cut(s) 232, 692, 807
MalI GATC 6 cut(s) 273, 321, 778, 967, 1043, 1183
MbiI CCGCTC 1 cut(s) 580
MboI GATC 6 cut(s) 271, 319, 776, 965, 1041, 1181
MboII GAAGA 8 cut(s) 23, 125, 314, 329, 412, 737, 798, 960
MflI RGATCY 4 cut(s) 271, 319, 1041, 1181
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 8 cut(s) 142, 179, 390, 403, 615, 750, 812, 908
MlyI GAGTC 1 cut(s) 836
MnlI CCTC 8 cut(s) 143, 336, 451, 1023, 1026, 1041, 1059, 1077
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 3 cut(s) 267, 627, 920
MslI CAYNNNNRTG 1 cut(s) 495
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 559
MvaI CCWGG 1 cut(s) 559
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 4 cut(s) 668, 982, 1036, 1063
NdeI CATATG 1 cut(s) 664
NdeII GATC 6 cut(s) 271, 319, 776, 965, 1041, 1181
NlaIII CATG 9 cut(s) 24, 102, 332, 494, 500, 590, 785, 1076, 1181
NlaIV GGNNCC 4 cut(s) 284, 448, 681, 738
NmuCI GTSAC 3 cut(s) 232, 692, 807
NspI RCATGY 3 cut(s) 102, 590, 1076
PaeR7I CTCGAG 2 cut(s) 134, 207
PagI TCATGA 1 cut(s) 496
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 4 cut(s) 50, 128, 212, 1165
PkrI GCNGC 2 cut(s) 867, 984
PleI GAGTC 1 cut(s) 835
PpsI GAGTC 1 cut(s) 835
Ppu21I YACGTR 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 680
PscI ACATGT 1 cut(s) 98
Psp5II RGGWCCY 1 cut(s) 680
Psp6I CCWGG 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 939
PspGI CCWGG 1 cut(s) 557
PspN4I GGNNCC 4 cut(s) 284, 448, 681, 738
PspPI GGNCC 2 cut(s) 283, 680
PspPPI RGGWCCY 1 cut(s) 680
PspXI VCTCGAGB 1 cut(s) 134
PstI CTGCAG 1 cut(s) 1041
PsuI RGATCY 4 cut(s) 271, 319, 1041, 1181
RsaI GTAC 7 cut(s) 84, 103, 191, 222, 262, 836, 1025
RsaNI GTAC 7 cut(s) 83, 102, 190, 221, 261, 835, 1024
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 3 cut(s) 267, 627, 920
SatI GCNGC 2 cut(s) 866, 983
Sau3AI GATC 6 cut(s) 271, 319, 776, 965, 1041, 1181
Sau96I GGNCC 2 cut(s) 283, 680
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 1 cut(s) 559
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 2 cut(s) 639, 990
SfcI CTRYAG 2 cut(s) 642, 1037
Sfr274I CTCGAG 2 cut(s) 134, 207
SinI GGWCC 2 cut(s) 283, 680
SlaI CTCGAG 2 cut(s) 134, 207
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 4 cut(s) 134, 207, 256, 482
SmoI CTYRAG 4 cut(s) 134, 207, 256, 482
Sse9I AATT 8 cut(s) 142, 179, 390, 403, 615, 750, 812, 908
SsiI CCGC 2 cut(s) 580, 705
SspI AATATT 1 cut(s) 365
SspMI CTAG 1 cut(s) 716
StyD4I CCNGG 1 cut(s) 557
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 388
TaiI ACGT 2 cut(s) 88, 873
TaqI TCGA 5 cut(s) 135, 208, 415, 469, 1163
TasI AATT 8 cut(s) 142, 179, 390, 403, 615, 750, 812, 908
TatI WGTACW 4 cut(s) 101, 220, 260, 1023
TfiI GAWTC 4 cut(s) 50, 128, 212, 1165
Tru1I TTAA 3 cut(s) 267, 627, 920
Tru9I TTAA 3 cut(s) 267, 627, 920
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 3 cut(s) 232, 692, 807
TseI GCWGC 2 cut(s) 865, 982
Tsp45I GTSAC 3 cut(s) 232, 692, 807
TspDTI ATGAA 3 cut(s) 9, 582, 1149
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 1 cut(s) 678
VpaK11BI GGWCC 2 cut(s) 283, 680
XapI RAATTY 2 cut(s) 179, 403
XceI RCATGY 3 cut(s) 102, 590, 1076
XhoI CTCGAG 2 cut(s) 134, 207
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 1 cut(s) 716
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.