Rh6BG012500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001007
Physical Location & Seq
Forward (+)
1837016 .. 1841571
4556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG012500.1

Sequence Viewer

Length: 549 bp
ATGGTGAAATATTGGGATACTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACTTTTGGCACCAAGACTTATGCACGCAGTCGAGCAGAATATCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTATGATAAGCATACACGGAATGACAAAGAAAAAACCTGGATTGATGAAGTTGCTGAGCGGACACATGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTAAGAAACGTCACAGAGTTCGTGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCACTTGCAGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAACAACAACAAGCACAGGTGCAGCAAGTTCAAACTCAGGAACAACTCTTGCAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

182

Amino Acids

21.35

Weight (kDa)

8.94

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 1 - 122 1.4e-22 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 92, 382
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 1 cut(s) 482
AgsI TTSAA 3 cut(s) 275, 395, 521
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 1 cut(s) 408
AluI AGCT 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 511
ApoI RAATTY 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 326
BanI GGYRCC 2 cut(s) 92, 382
BanII GRGCYC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 523
BccI CCATC 2 cut(s) 316, 395
BciT130I CCWGG 1 cut(s) 205
BciVI GTATCC 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 288
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 1 cut(s) 512
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 513
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 1 cut(s) 326
BmiI GGNNCC 3 cut(s) 94, 327, 384
BmrFI CCNGG 1 cut(s) 205
BmsI GCATC 1 cut(s) 285
BpiI GAAGAC 1 cut(s) 439
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
BseBI CCWGG 1 cut(s) 205
BseMII CTCAG 3 cut(s) 33, 213, 539
BseXI GCAGC 1 cut(s) 523
BsgI GTGCAG 1 cut(s) 530
BshNI GGYRCC 2 cut(s) 92, 382
BslFI GGGAC 1 cut(s) 339
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 151, 422
Bsp1720I GCTNAGC 1 cut(s) 222
BspACI CCGC 1 cut(s) 226
BspCNI CTCAG 3 cut(s) 34, 214, 538
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 3 cut(s) 94, 327, 384
BspPI GGATC 1 cut(s) 146
BspT107I GGYRCC 2 cut(s) 92, 382
BsrBI CCGCTC 1 cut(s) 226
BssMI GATC 2 cut(s) 151, 422
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 34
BstAPI GCANNNNNTGC 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 4 cut(s) 42, 222, 330, 525
BstKTI GATC 2 cut(s) 154, 425
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 2 cut(s) 151, 422
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 203
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 439
BsuI GTATCC 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 109
CciI TCATGA 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 1 cut(s) 481
CviAII CATG 4 cut(s) 137, 143, 233, 428
CviJI RGCY 2 cut(s) 148, 408
CviKI_1 RGCY 2 cut(s) 148, 408
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 4 cut(s) 42, 222, 330, 525
DpnI GATC 2 cut(s) 153, 424
DpnII GATC 2 cut(s) 151, 422
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 4 cut(s) 140, 146, 236, 431
FaqI GGGAC 1 cut(s) 339
FatI CATG 4 cut(s) 136, 142, 232, 427
FauNDI CATATG 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 512
FspBI CTAG 1 cut(s) 362
GluI GCNGC 1 cut(s) 512
Hin1II CATG 4 cut(s) 140, 146, 236, 431
HinfI GANTC 1 cut(s) 473
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 3 cut(s) 130, 143, 527
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 7 cut(s) 56, 107, 244, 317, 451, 511, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpyF3I CTNAG 4 cut(s) 42, 222, 330, 525
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 4 cut(s) 140, 146, 236, 431
Kzo9I GATC 2 cut(s) 151, 422
LpnPI CCDG 6 cut(s) 190, 217, 222, 387, 491, 512
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 1 cut(s) 285
MaeI CTAG 1 cut(s) 362
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 2 cut(s) 338, 453
MalI GATC 2 cut(s) 153, 424
MbiI CCGCTC 1 cut(s) 226
MboI GATC 2 cut(s) 151, 422
MboII GAAGA 3 cut(s) 58, 383, 444
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 5 cut(s) 36, 49, 261, 396, 458
MlyI GAGTC 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeI CATATG 1 cut(s) 310
NdeII GATC 2 cut(s) 151, 422
NlaIII CATG 4 cut(s) 140, 146, 236, 431
NlaIV GGNNCC 3 cut(s) 94, 327, 384
NmuCI GTSAC 2 cut(s) 338, 453
NspI RCATGY 1 cut(s) 236
PagI TCATGA 1 cut(s) 142
PkrI GCNGC 1 cut(s) 513
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PpuMI RGGWCCY 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 3 cut(s) 94, 327, 384
PspPI GGNCC 1 cut(s) 326
PspPPI RGGWCCY 1 cut(s) 326
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 141
SatI GCNGC 1 cut(s) 512
Sau3AI GATC 2 cut(s) 151, 422
Sau96I GGNCC 1 cut(s) 326
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 205
SduI GDGCHC 1 cut(s) 150
SetI ASST 9 cut(s) 206, 280, 331, 340, 367, 376, 410, 510, 548
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 5 cut(s) 36, 49, 261, 396, 458
SsiI CCGC 1 cut(s) 226
SspI AATATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 340
TaqI TCGA 2 cut(s) 61, 115
TasI AATT 5 cut(s) 36, 49, 261, 396, 458
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 2 cut(s) 338, 453
TseI GCWGC 1 cut(s) 511
Tsp45I GTSAC 2 cut(s) 338, 453
TspDTI ATGAA 1 cut(s) 228
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 326
XapI RAATTY 1 cut(s) 49
XceI RCATGY 1 cut(s) 236
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.