Rroxscaffold_5G00336170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001007
Physical Location & Seq
Forward (+)
3890939 .. 3900834
9896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336170.1

Sequence Viewer

Length: 615 bp
ATGTTCTTCCCGGAGTTGAGAGATCGAGCTTCCGAAGACGGTGGTGGTTCACTTCGGATGATTGAGCTCTCCCGACTCTCCACCCTACGTTCCTCCGAATTGTACGTGTCATTTCAAGACCTCCCATTACTTGGAGACGGCTATGGCGGCGAGGTGGCCGACAAGTGGGTCGGGTATGGACAAAAGTTGGGTTCATTTAGATCGCTGCGGTGTGGAATACTTGCTGGTTTGAAAGTGTTTTTAGTTGGGTTCATTTGGATGGCCGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTTGCGGTTGAAGGAAATGAGACTACGAGAGATGCGAGAAAGAGCATATGTTGCAATGATGGGACACGAGAAACGTCACGAGTTTGCGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACACTATGCTCACTTGCGGTCACAATTTATGGAGTTAGAATCCAAGTACCAACAACAACAAGAGCAAGCCCAGGTGCAACAAACAACTCTTCAATCAACTAATCTCTCGGATTATCCAAAGTCTCTCCGCAGCAACCAATCTTTAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

204

Amino Acids

22.71

Weight (kDa)

6.43

Isoelectric Point (pI)

55.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 412
AccB7I CCANNNNNTGG 1 cut(s) 131
AciI CCGC 7 cut(s) 147, 208, 264, 299, 381, 481, 592
AcoI YGGCCR 2 cut(s) 156, 261
AfaI GTAC 2 cut(s) 104, 512
AfiI CCNNNNNNNGG 2 cut(s) 131, 165
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 5 cut(s) 116, 232, 305, 425, 557
AjnI CCWGG 1 cut(s) 534
AluBI AGCT 3 cut(s) 29, 67, 438
AluI AGCT 3 cut(s) 29, 67, 438
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 3 cut(s) 129, 308, 591
AoxI GGCC 2 cut(s) 156, 261
ApeKI GCWGC 2 cut(s) 205, 594
AsuC2I CCSGG 1 cut(s) 11
BanI GGYRCC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 69
BauI CACGAG 2 cut(s) 360, 372
BbsI GAAGAC 2 cut(s) 42, 469
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 192, 606
BccI CCATC 3 cut(s) 253, 347, 425
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 536
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 3 cut(s) 129, 308, 591
BfaI CTAG 2 cut(s) 392, 613
BisI GCNGC 4 cut(s) 148, 206, 264, 595
BlsI GCNGC 4 cut(s) 149, 207, 265, 596
Bme1390I CCNGG 2 cut(s) 11, 536
BmiI GGNNCC 1 cut(s) 414
BmrFI CCNGG 2 cut(s) 11, 536
BmsI GCATC 1 cut(s) 316
BpiI GAAGAC 2 cut(s) 42, 469
BpuMI CCSGG 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 534
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 165
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 536
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 63, 264
BseLI CCNNNNNNNGG 2 cut(s) 131, 165
BseMI GCAATG 1 cut(s) 355
BseXI GCAGC 2 cut(s) 192, 606
BshFI GGCC 2 cut(s) 158, 263
BshNI GGYRCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 131, 165
BsmAI GTCTC 3 cut(s) 129, 308, 591
BsmBI CGTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 2 cut(s) 158, 263
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 22, 200, 452
BspACI CCGC 7 cut(s) 147, 208, 264, 299, 381, 481, 592
BspANI GGCC 2 cut(s) 158, 263
BspLI GGNNCC 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 3 cut(s) 22, 200, 452
BssSI CACGAG 2 cut(s) 360, 372
Bst2BI CACGAG 2 cut(s) 360, 372
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 558
BstAPI GCANNNNNTGC 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 1 cut(s) 531
BstF5I GGATG 2 cut(s) 63, 264
BstKTI GATC 3 cut(s) 25, 203, 455
BstMAI GTCTC 3 cut(s) 129, 308, 591
BstMBI GATC 3 cut(s) 22, 200, 452
BstMWI GCNNNNNNNGC 2 cut(s) 147, 345
BstNI CCWGG 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 9, 534
BstV1I GCAGC 2 cut(s) 192, 606
BstV2I GAAGAC 2 cut(s) 42, 469
BsuRI GGCC 2 cut(s) 158, 263
BtsCI GGATG 2 cut(s) 63, 264
Cac8I GCNNGC 1 cut(s) 531
Csp6I GTAC 2 cut(s) 103, 511
CviAII CATG 1 cut(s) 458
CviJI RGCY 7 cut(s) 29, 67, 141, 158, 263, 438, 533
CviKI_1 RGCY 7 cut(s) 29, 67, 141, 158, 263, 438, 533
CviQI GTAC 2 cut(s) 103, 511
DpnI GATC 3 cut(s) 24, 202, 454
DpnII GATC 3 cut(s) 22, 200, 452
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 2 cut(s) 156, 261
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 69
Esp3I CGTCTC 1 cut(s) 129
FaeI CATG 1 cut(s) 461
FaqI GGGAC 1 cut(s) 370
FatI CATG 1 cut(s) 457
FauNDI CATATG 1 cut(s) 341
Fnu4HI GCNGC 4 cut(s) 148, 206, 264, 595
FokI GGATG 2 cut(s) 70, 271
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 148, 206, 264, 595
FspBI CTAG 2 cut(s) 392, 613
GluI GCNGC 4 cut(s) 148, 206, 264, 595
HaeIII GGCC 2 cut(s) 158, 263
HapII CCGG 1 cut(s) 11
Hin1II CATG 1 cut(s) 461
HinfI GANTC 2 cut(s) 75, 503
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 4 cut(s) 34, 57, 97, 574
Hpy188III TCNNGA 3 cut(s) 72, 116, 372
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 3 cut(s) 88, 105, 368
HpyCH4V TGCA 3 cut(s) 274, 348, 541
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 345
HpySE526I ACGT 3 cut(s) 88, 105, 368
Hsp92II CATG 1 cut(s) 461
Kzo9I GATC 3 cut(s) 22, 200, 452
LpnPI CCDG 6 cut(s) 24, 210, 252, 417, 521, 548
Lsp1109I GCAGC 2 cut(s) 192, 606
LweI GCATC 1 cut(s) 316
MaeI CTAG 2 cut(s) 392, 613
MaeII ACGT 3 cut(s) 88, 105, 368
MaeIII GTNAC 2 cut(s) 369, 483
MalI GATC 3 cut(s) 24, 202, 454
MboI GATC 3 cut(s) 22, 200, 452
MboII GAAGA 4 cut(s) 47, 413, 474, 545
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 4 cut(s) 98, 291, 426, 488
MlyI GAGTC 1 cut(s) 69
MnlI CCTC 3 cut(s) 103, 131, 145
MseI TTAA 1 cut(s) 608
MslI CAYNNNNRTG 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 11, 536
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 2 cut(s) 147, 345
NciI CCSGG 1 cut(s) 11
NdeI CATATG 1 cut(s) 341
NdeII GATC 3 cut(s) 22, 200, 452
NlaIII CATG 1 cut(s) 461
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 2 cut(s) 369, 483
PcsI WCGNNNNNNNCGW 1 cut(s) 326
PfeI GAWTC 1 cut(s) 503
PflMI CCANNNNNTGG 1 cut(s) 131
PfoI TCCNGGA 1 cut(s) 9
PkrI GCNGC 4 cut(s) 149, 207, 265, 596
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Ppu21I YACGTR 1 cut(s) 106
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 1 cut(s) 414
RsaI GTAC 2 cut(s) 104, 512
RsaNI GTAC 2 cut(s) 103, 511
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 608
SatI GCNGC 4 cut(s) 148, 206, 264, 595
Sau3AI GATC 3 cut(s) 22, 200, 452
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 2 cut(s) 11, 536
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 1 cut(s) 316
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 4 cut(s) 98, 291, 426, 488
SsiI CCGC 7 cut(s) 147, 208, 264, 299, 381, 481, 592
SspMI CTAG 2 cut(s) 392, 613
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 9, 534
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 3 cut(s) 91, 108, 371
TaqI TCGA 1 cut(s) 25
TasI AATT 4 cut(s) 98, 291, 426, 488
TauI GCSGC 2 cut(s) 150, 266
TfiI GAWTC 1 cut(s) 503
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TseFI GTSAC 2 cut(s) 369, 483
TseI GCWGC 2 cut(s) 205, 594
Tsp45I GTSAC 2 cut(s) 369, 483
TspDTI ATGAA 2 cut(s) 183, 241
Van91I CCANNNNNTGG 1 cut(s) 131
XspI CTAG 2 cut(s) 392, 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.