Rh5CG249500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001007
Physical Location & Seq
Reverse (-)
26197009 .. 26206540
9532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG249500.1

Sequence Viewer

Length: 1224 bp
ATGAGTTCCGAAGATAGTTCATGGGAAGGTGATATAGAAGCACCAAGTGATTCTGCTAATGGCACAGGCAAAACTACCAAAGTATGTGGTAAAGGAACATGTACTTGGATGGAAGATAATAAAAAAGAATCCCTCGAGTTCAATTCTATGGGTGTTAGTGTAGGTTCTAATGATGGAAAATTTGGCCGGTACTTGGGTGGGTTAGCTCGAGATTCTAATGTACTTCCGCTCGTCACTAAACCTTGGCCTAAAGTCTCAAGTACTATTAAAGATCCCTTATGGGACCAAATATATGCAACTATTGAATGGAAACCTGAAGATCTTCCTCGTCTACCTCTCATAAAGCATAATATAATGGAAAGAGTTGCTAAATATTGGAGAAGCTACAAGAACAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCACACCAGGACGTTGGGTGTGTGGGAATAAAGATGTCAACGCAGCTGAATGGCGCGAAATGGTGAAATATTGGGATACTGAAAAGACAACATTTTTTTATGATAAGCATACACGGAATGACAAAGAAAAAACCTGGATTGATGAAGTTGCTGAGCGGACACATCAACACCCCCATAATGAAGGGCTTGAGGAGAAGGGTGATCCCTCACATTGCGTTGCAAAAGGTGGTGAACCACTATCTTTGGTAGTGTTAAAAACAGGCTGCAATCCAAAGGATTTCAAACAAACCTATGCTCAGTTATCAACAGGAAAGACGAAAGTAGTAGATGGAATTGGATTTGGGCCATTAACGAAGATAGGGTTCACCAAACTGAACCGGGAGATATGCCAAATGTTGGTTGACAACTTTGAGGTGGAAAAGGAAGGCTGCTGTATCAAAATTCAGGGGAGATCTTTGTCAATTTGGGATAGTAACTTTGAGAGCGTGATGGGGGTGAGGAACGGTGGATCAGTTGTAGAACTAGATGGATTGTCAGAGGTCATTAAGATAAATGAGCTAACAAGTAAGATATTTGGTGAGAACAGAGAGATTAGTATCGTTACTTTGAAGAAGAACATACTAGAGAGGGAGGAAGTTGATGATATCTTCAAAATAAGCTTTGTCCTATATGCTCTTGCCATCCTGTTATGCCCGACGAGGCCTGGCTATGTTAAGAGGAAGTTTCTTATTCCAGTTTGTGACGCTGCAGCAATCGGTACAAAGAATTGGGCAAGTGTATGTGTTTTCGACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

407

Amino Acids

45.83

Weight (kDa)

7.49

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 823
AccBSI CCGCTC 2 cut(s) 229, 583
AccI GTMKAC 1 cut(s) 331
AccII CGCG 1 cut(s) 483
AciI CCGC 2 cut(s) 227, 583
AclWI GGATC 4 cut(s) 266, 410, 623, 943
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 179, 867
AcuI CTGAAG 1 cut(s) 336
AdeI CACNNNGTG 1 cut(s) 47
AfaI GTAC 5 cut(s) 103, 191, 222, 262, 1186
AfiI CCNNNNNNNGG 3 cut(s) 193, 425, 823
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 5 cut(s) 142, 305, 709, 1036, 1078
AjnI CCWGG 3 cut(s) 433, 560, 1129
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 6 cut(s) 206, 384, 407, 473, 985, 1086
AluI AGCT 6 cut(s) 206, 384, 407, 473, 985, 1086
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 4 cut(s) 266, 410, 623, 943
Ama87I CYCGRG 2 cut(s) 134, 207
AoxI GGCC 4 cut(s) 184, 245, 770, 1127
ApeKI GCWGC 5 cut(s) 470, 690, 855, 1172, 1175
ApoI RAATTY 2 cut(s) 179, 867
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 2 cut(s) 283, 770
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 7 cut(s) 41, 502, 638, 668, 784, 934, 1016
AvaI CYCGRG 2 cut(s) 134, 207
AvaII GGWCC 1 cut(s) 283
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BbvI GCAGC 5 cut(s) 482, 677, 842, 1159, 1187
BccI CCATC 6 cut(s) 103, 167, 749, 910, 947, 1115
BciT130I CCWGG 3 cut(s) 435, 562, 1131
BciVI GTATCC 1 cut(s) 496
BcnI CCSGG 1 cut(s) 806
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 3 cut(s) 950, 1049, 1222
BfmI CTRYAG 1 cut(s) 1173
BfrI CTTAAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 496
BglII AGATCT 2 cut(s) 319, 878
BisI GCNGC 5 cut(s) 471, 691, 856, 1173, 1176
BlpI GCTNAGC 1 cut(s) 579
BlsI GCNGC 5 cut(s) 472, 692, 857, 1174, 1177
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 4 cut(s) 435, 562, 806, 1131
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 2 cut(s) 134, 207
BmgT120I GGNCC 2 cut(s) 283, 770
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 4 cut(s) 435, 562, 806, 1131
Bpu1102I GCTNAGC 1 cut(s) 579
BpuEI CTTGAG 2 cut(s) 241, 635
BpuMI CCSGG 1 cut(s) 806
BsaBI GATNNNNATC 1 cut(s) 1022
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 425, 823
Bse118I RCCGGY 1 cut(s) 186
Bse1I ACTGG 1 cut(s) 1160
Bse3DI GCAATG 1 cut(s) 637
Bse8I GATNNNNATC 1 cut(s) 1022
BseBI CCWGG 3 cut(s) 435, 562, 1131
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 114, 1107
BseJI GATNNNNATC 1 cut(s) 1022
BseLI CCNNNNNNNGG 3 cut(s) 193, 425, 823
BseMI GCAATG 1 cut(s) 637
BseMII CTCAG 2 cut(s) 570, 737
BseNI ACTGG 1 cut(s) 1160
BseRI GAGGAG 1 cut(s) 632
BseXI GCAGC 5 cut(s) 482, 677, 842, 1159, 1187
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 4 cut(s) 186, 247, 772, 1129
BsiHKCI CYCGRG 2 cut(s) 134, 207
BsiSI CCGG 2 cut(s) 187, 805
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 3 cut(s) 193, 425, 823
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 4 cut(s) 186, 247, 772, 1129
BsoBI CYCGRG 2 cut(s) 134, 207
Bsp143I GATC 6 cut(s) 271, 319, 415, 628, 878, 935
Bsp1720I GCTNAGC 1 cut(s) 579
BspACI CCGC 2 cut(s) 227, 583
BspANI GGCC 4 cut(s) 186, 247, 772, 1129
BspCNI CTCAG 2 cut(s) 571, 736
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 284
BspMAI CTGCAG 1 cut(s) 1177
BspPI GGATC 4 cut(s) 266, 410, 623, 943
BspTI CTTAAG 1 cut(s) 398
BsrBI CCGCTC 2 cut(s) 229, 583
BsrDI GCAATG 1 cut(s) 637
BsrFI RCCGGY 1 cut(s) 186
BsrI ACTGG 1 cut(s) 1160
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 6 cut(s) 271, 319, 415, 628, 878, 935
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 3 cut(s) 435, 562, 1131
Bst4CI ACNGT 1 cut(s) 932
BstAFI CTTAAG 1 cut(s) 398
BstDEI CTNAG 2 cut(s) 579, 723
BstF5I GGATG 2 cut(s) 114, 1107
BstFNI CGCG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 6 cut(s) 274, 322, 418, 631, 881, 938
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 6 cut(s) 271, 319, 415, 628, 878, 935
BstNI CCWGG 3 cut(s) 435, 562, 1131
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 4 cut(s) 433, 560, 804, 1129
BstSFI CTRYAG 1 cut(s) 1173
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 5 cut(s) 482, 677, 842, 1159, 1187
BstX2I RGATCY 3 cut(s) 271, 319, 878
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 3 cut(s) 271, 319, 878
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 4 cut(s) 186, 247, 772, 1129
BtsCI GGATG 2 cut(s) 114, 1107
CfoI GCGC 1 cut(s) 483
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 2 cut(s) 283, 770
CseI GACGC 1 cut(s) 1178
Csp6I GTAC 5 cut(s) 102, 190, 221, 261, 1185
CspCI CAANNNNNGTGG 4 cut(s) 67, 102, 651, 686
CviAII CATG 2 cut(s) 21, 99
CviQI GTAC 5 cut(s) 102, 190, 221, 261, 1185
DdeI CTNAG 2 cut(s) 579, 723
DpnI GATC 6 cut(s) 273, 321, 417, 630, 880, 937
DpnII GATC 6 cut(s) 271, 319, 415, 628, 878, 935
DraIII CACNNNGTG 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 242
Eco147I AGGCCT 1 cut(s) 1129
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 336
Eco88I CYCGRG 2 cut(s) 134, 207
EcoRII CCWGG 3 cut(s) 433, 560, 1129
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 24, 102
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 20, 98
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 5 cut(s) 471, 691, 856, 1173, 1176
FokI GGATG 2 cut(s) 121, 1094
Fsp4HI GCNGC 5 cut(s) 471, 691, 856, 1173, 1176
FspBI CTAG 3 cut(s) 950, 1049, 1222
GlaI GCGC 1 cut(s) 482
GluI GCNGC 5 cut(s) 471, 691, 856, 1173, 1176
HaeIII GGCC 4 cut(s) 186, 247, 772, 1129
HapII CCGG 2 cut(s) 187, 805
HgaI GACGC 1 cut(s) 1178
HhaI GCGC 1 cut(s) 483
Hin1II CATG 2 cut(s) 24, 102
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 2 cut(s) 466, 829
HindII GTYRAC 2 cut(s) 466, 829
HindIII AAGCTT 1 cut(s) 1084
HinfI GANTC 3 cut(s) 50, 128, 212
HpaII CCGG 2 cut(s) 187, 805
HphI GGTGA 7 cut(s) 41, 502, 638, 668, 784, 934, 1016
Hpy166II GTNNAC 5 cut(s) 332, 466, 659, 792, 829
Hpy188I TCNGA 2 cut(s) 10, 964
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 5 cut(s) 332, 466, 659, 792, 829
Hpy99I CGWCG 1 cut(s) 1126
HpyAV CCTTC 4 cut(s) 20, 602, 616, 845
HpyCH4III ACNGT 1 cut(s) 932
HpyCH4IV ACGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 296, 647, 693, 1175
HpyF3I CTNAG 2 cut(s) 579, 723
HpySE526I ACGT 1 cut(s) 439
Hsp92II CATG 2 cut(s) 24, 102
HspAI GCGC 1 cut(s) 481
Kzo9I GATC 6 cut(s) 271, 319, 415, 628, 878, 935
Lsp1109I GCAGC 5 cut(s) 482, 677, 842, 1159, 1187
MaeI CTAG 3 cut(s) 950, 1049, 1222
MaeII ACGT 1 cut(s) 439
MaeIII GTNAC 4 cut(s) 232, 899, 1027, 1166
MalI GATC 6 cut(s) 273, 321, 417, 630, 880, 937
MbiI CCGCTC 2 cut(s) 229, 583
MboI GATC 6 cut(s) 271, 319, 415, 628, 878, 935
MboII GAAGA 8 cut(s) 23, 125, 314, 329, 793, 1048, 1051, 1066
MflI RGATCY 3 cut(s) 271, 319, 878
MluCI AATT 6 cut(s) 142, 179, 759, 867, 888, 1192
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 6 cut(s) 267, 399, 680, 776, 972, 1140
MspA1I CMGCKG 1 cut(s) 473
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 2 cut(s) 187, 805
MspR9I CCNGG 4 cut(s) 435, 562, 806, 1131
MvaI CCWGG 3 cut(s) 435, 562, 1131
MvnI CGCG 1 cut(s) 483
NciI CCSGG 1 cut(s) 806
NdeII GATC 6 cut(s) 271, 319, 415, 628, 878, 935
NlaIII CATG 2 cut(s) 24, 102
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 2 cut(s) 232, 1166
NspI RCATGY 1 cut(s) 102
PaeR7I CTCGAG 2 cut(s) 134, 207
PceI AGGCCT 1 cut(s) 1129
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 50, 128, 212
PflMI CCANNNNNTGG 1 cut(s) 823
PkrI GCNGC 5 cut(s) 472, 692, 857, 1174, 1177
PscI ACATGT 1 cut(s) 98
Psp6I CCWGG 3 cut(s) 433, 560, 1129
PspGI CCWGG 3 cut(s) 433, 560, 1129
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 2 cut(s) 283, 770
PspXI VCTCGAGB 1 cut(s) 134
PstI CTGCAG 1 cut(s) 1177
PsuI RGATCY 3 cut(s) 271, 319, 878
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 5 cut(s) 103, 191, 222, 262, 1186
RsaNI GTAC 5 cut(s) 102, 190, 221, 261, 1185
SaqAI TTAA 6 cut(s) 267, 399, 680, 776, 972, 1140
SatI GCNGC 5 cut(s) 471, 691, 856, 1173, 1176
Sau3AI GATC 6 cut(s) 271, 319, 415, 628, 878, 935
Sau96I GGNCC 2 cut(s) 283, 770
ScaI AGTACT 1 cut(s) 262
ScrFI CCNGG 4 cut(s) 435, 562, 806, 1131
SfcI CTRYAG 1 cut(s) 1173
Sfr274I CTCGAG 2 cut(s) 134, 207
SinI GGWCC 1 cut(s) 283
SlaI CTCGAG 2 cut(s) 134, 207
SmlI CTYRAG 5 cut(s) 134, 207, 256, 398, 614
SmoI CTYRAG 5 cut(s) 134, 207, 256, 398, 614
Sse9I AATT 6 cut(s) 142, 179, 759, 867, 888, 1192
SseBI AGGCCT 1 cut(s) 1129
SsiI CCGC 2 cut(s) 227, 583
SspI AATATT 2 cut(s) 374, 497
SspMI CTAG 3 cut(s) 950, 1049, 1222
StuI AGGCCT 1 cut(s) 1129
StyD4I CCNGG 4 cut(s) 433, 560, 804, 1129
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 932
TaiI ACGT 1 cut(s) 442
TaqI TCGA 3 cut(s) 135, 208, 1215
TasI AATT 6 cut(s) 142, 179, 759, 867, 888, 1192
TatI WGTACW 3 cut(s) 101, 220, 260
TfiI GAWTC 3 cut(s) 50, 128, 212
Tru1I TTAA 6 cut(s) 267, 399, 680, 776, 972, 1140
Tru9I TTAA 6 cut(s) 267, 399, 680, 776, 972, 1140
TseFI GTSAC 2 cut(s) 232, 1166
TseI GCWGC 5 cut(s) 470, 690, 855, 1172, 1175
Tsp45I GTSAC 2 cut(s) 232, 1166
TspDTI ATGAA 3 cut(s) 9, 585, 621
TspGWI ACGGA 1 cut(s) 556
Van91I CCANNNNNTGG 1 cut(s) 823
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 2 cut(s) 179, 867
XceI RCATGY 1 cut(s) 102
XhoI CTCGAG 2 cut(s) 134, 207
XmiI GTMKAC 1 cut(s) 331
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 3 cut(s) 950, 1049, 1222
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.