Rh1CG076600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001007
Physical Location & Seq
Forward (+)
15962293 .. 15964569
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG076600.1

Sequence Viewer

Length: 591 bp
ATGAGTTCTGAAGATAGTTCATGGGAAGGTGATATAGAAGGACTAAGTGATTCTGCTAATGGCACAGGCAAAACTACCAAAGTACGTGGTAAAGGAACATGTACTTGGATGGAAGATAACAAAAAAGAATCCCTCGAGTTCAATTCTATGGGTGTTAGTGTAGGTTCTAATGATGGAAAATTTGGCCGGTACTTGGGTGGGTTAGCTCGAGATTCTAATGTACTCCCGCTCGTCACTAAACCTTGGCCTAAAGTCTCAAGTACTATTAAAGATCCCTTATGGGACCAAATATATGCAACTATTGAATGGAAACCTGAAGATCTTCCTCGTATGCCTCTCATAAAGCATAACATAATGGAAAGAGTTGCTAAATATTGGAGAAGCTACAAGAACAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCACACCAGGACGTTGGGTGTGTGGAAATAAAGATGTCAACGCAGCTGAATGGCGCGAAATGGTGAAATATTGGGATACTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTGGCACCAAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

196

Amino Acids

22.31

Weight (kDa)

9.27

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 158 - 196 3e-08 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 578
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 1 cut(s) 483
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 266, 410
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 2 cut(s) 179, 535
AcuI CTGAAG 2 cut(s) 30, 336
AfaI GTAC 5 cut(s) 84, 103, 191, 222, 262
AfiI CCNNNNNNNGG 2 cut(s) 193, 425
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 2 cut(s) 142, 305
AjnI CCWGG 1 cut(s) 433
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AluBI AGCT 4 cut(s) 206, 384, 407, 473
AluI AGCT 4 cut(s) 206, 384, 407, 473
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 2 cut(s) 266, 410
Ama87I CYCGRG 2 cut(s) 134, 207
AoxI GGCC 2 cut(s) 184, 245
ApeKI GCWGC 1 cut(s) 470
ApoI RAATTY 2 cut(s) 179, 535
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 41, 502
AvaI CYCGRG 2 cut(s) 134, 207
AvaII GGWCC 1 cut(s) 283
BaeI ACNNNNGTAYC 2 cut(s) 181, 214
BanI GGYRCC 1 cut(s) 578
BbvI GCAGC 1 cut(s) 482
BccI CCATC 2 cut(s) 103, 167
BciT130I CCWGG 1 cut(s) 435
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 1 cut(s) 259
BfrI CTTAAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 496
BglII AGATCT 1 cut(s) 319
BisI GCNGC 1 cut(s) 471
BlsI GCNGC 1 cut(s) 472
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 2 cut(s) 134, 207
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 2 cut(s) 284, 580
BmrFI CCNGG 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 241
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 425
Bse118I RCCGGY 1 cut(s) 186
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 193, 425
BseMII CTCAG 1 cut(s) 519
BseXI GCAGC 1 cut(s) 482
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 2 cut(s) 186, 247
BshNI GGYRCC 1 cut(s) 578
BsiHKCI CYCGRG 2 cut(s) 134, 207
BsiSI CCGG 1 cut(s) 187
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 193, 425
BsmAI GTCTC 1 cut(s) 259
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 2 cut(s) 186, 247
BsoBI CYCGRG 2 cut(s) 134, 207
Bsp143I GATC 3 cut(s) 271, 319, 415
BspACI CCGC 1 cut(s) 227
BspANI GGCC 2 cut(s) 186, 247
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 2 cut(s) 284, 580
BspPI GGATC 2 cut(s) 266, 410
BspT107I GGYRCC 1 cut(s) 578
BspTI CTTAAG 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 3 cut(s) 271, 319, 415
BssT1I CCWWGG 1 cut(s) 242
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 520
BstAFI CTTAAG 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 44, 528
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 3 cut(s) 274, 322, 418
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 271, 319, 415
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 433
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 1 cut(s) 482
BstX2I RGATCY 2 cut(s) 271, 319
BstXI CCANNNNNNTGG 1 cut(s) 441
BstYI RGATCY 2 cut(s) 271, 319
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 2 cut(s) 186, 247
BtsCI GGATG 1 cut(s) 114
CfoI GCGC 1 cut(s) 483
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 283
Csp6I GTAC 5 cut(s) 83, 102, 190, 221, 261
CspCI CAANNNNNGTGG 2 cut(s) 67, 102
CviAII CATG 2 cut(s) 21, 99
CviJI RGCY 6 cut(s) 186, 206, 247, 384, 407, 473
CviKI_1 RGCY 6 cut(s) 186, 206, 247, 384, 407, 473
CviQI GTAC 5 cut(s) 83, 102, 190, 221, 261
DdeI CTNAG 2 cut(s) 44, 528
DpnI GATC 3 cut(s) 273, 321, 417
DpnII GATC 3 cut(s) 271, 319, 415
EaeI YGGCCR 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 283
Eco57I CTGAAG 2 cut(s) 30, 336
Eco88I CYCGRG 2 cut(s) 134, 207
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 24, 102
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 20, 98
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 471
GlaI GCGC 1 cut(s) 482
GluI GCNGC 1 cut(s) 471
HaeIII GGCC 2 cut(s) 186, 247
HapII CCGG 1 cut(s) 187
HhaI GCGC 1 cut(s) 483
Hin1II CATG 2 cut(s) 24, 102
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 3 cut(s) 50, 128, 212
HpaII CCGG 1 cut(s) 187
HphI GGTGA 2 cut(s) 41, 502
Hpy166II GTNNAC 1 cut(s) 466
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 1 cut(s) 466
HpyAV CCTTC 2 cut(s) 20, 32
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4IV ACGT 2 cut(s) 85, 439
HpyCH4V TGCA 2 cut(s) 296, 542
HpyF3I CTNAG 2 cut(s) 44, 528
HpySE526I ACGT 2 cut(s) 85, 439
Hsp92II CATG 2 cut(s) 24, 102
HspAI GCGC 1 cut(s) 481
Kzo9I GATC 3 cut(s) 271, 319, 415
LpnPI CCDG 6 cut(s) 51, 200, 327, 420, 447, 561
Lsp1109I GCAGC 1 cut(s) 482
MaeII ACGT 2 cut(s) 85, 439
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 273, 321, 417
MbiI CCGCTC 1 cut(s) 229
MboI GATC 3 cut(s) 271, 319, 415
MboII GAAGA 5 cut(s) 23, 125, 314, 329, 544
MflI RGATCY 2 cut(s) 271, 319
MluCI AATT 4 cut(s) 142, 179, 522, 535
MnlI CCTC 4 cut(s) 143, 336, 345, 583
MroXI GAANNNNTTC 1 cut(s) 321
MseI TTAA 2 cut(s) 267, 399
MspA1I CMGCKG 1 cut(s) 473
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 435
MvaI CCWGG 1 cut(s) 435
MvnI CGCG 1 cut(s) 483
NdeII GATC 3 cut(s) 271, 319, 415
NlaIII CATG 2 cut(s) 24, 102
NlaIV GGNNCC 2 cut(s) 284, 580
NmuCI GTSAC 1 cut(s) 232
NspI RCATGY 1 cut(s) 102
PaeR7I CTCGAG 2 cut(s) 134, 207
PciI ACATGT 1 cut(s) 98
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 50, 128, 212
PkrI GCNGC 1 cut(s) 472
Ppu21I YACGTR 1 cut(s) 86
PscI ACATGT 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 284, 580
PspPI GGNCC 1 cut(s) 283
PspXI VCTCGAGB 1 cut(s) 134
PsuI RGATCY 2 cut(s) 271, 319
PvuII CAGCTG 1 cut(s) 473
RsaI GTAC 5 cut(s) 84, 103, 191, 222, 262
RsaNI GTAC 5 cut(s) 83, 102, 190, 221, 261
SaqAI TTAA 2 cut(s) 267, 399
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 3 cut(s) 271, 319, 415
Sau96I GGNCC 1 cut(s) 283
ScaI AGTACT 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 435
Sfr274I CTCGAG 2 cut(s) 134, 207
SinI GGWCC 1 cut(s) 283
SlaI CTCGAG 2 cut(s) 134, 207
SmlI CTYRAG 4 cut(s) 134, 207, 256, 398
SmoI CTYRAG 4 cut(s) 134, 207, 256, 398
Sse9I AATT 4 cut(s) 142, 179, 522, 535
SsiI CCGC 1 cut(s) 227
SspI AATATT 2 cut(s) 374, 497
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 520
TaiI ACGT 2 cut(s) 88, 442
TaqI TCGA 3 cut(s) 135, 208, 547
TasI AATT 4 cut(s) 142, 179, 522, 535
TatI WGTACW 3 cut(s) 101, 220, 260
TfiI GAWTC 3 cut(s) 50, 128, 212
Tru1I TTAA 2 cut(s) 267, 399
Tru9I TTAA 2 cut(s) 267, 399
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 470
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 9
Vha464I CTTAAG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 2 cut(s) 179, 535
XceI RCATGY 1 cut(s) 102
XhoI CTCGAG 2 cut(s) 134, 207
XmnI GAANNNNTTC 1 cut(s) 321
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.