Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Reverse (-)

73901377 .. 73903113

Gene Structure 1737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG429800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTGATAGCAGATGCTAGTGAACAGCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTATGATAAGCATACACAGAATGACAAAGAAAAAACCTGGATTGATGAAGTTGCTGAGTGGACACATGCTGGTATGCAAGAGAAGTTGGCAGAAATTGTAGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACGTCATAGAGTTCGTGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCACTTGCAGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAACAACAGCAAGCACAGGTGCAGCAAGTTCAAACTCAAGAACAACTCTTGCAAACCCAACAAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCGCAACAATCTTCTCAGCCTTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCCTCAAATGTACTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGTCTCAACATGCTTATCCTACCACTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTGAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCGTGGATCTGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

246

Amino Acids

28.24

Weight (kDa)

5.53

Isoelectric Point (pI)

68.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	7 - 89	6.5e-08	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AciI	CCGC	1 cut(s)	584
AclWI	GGATC	2 cut(s)	47, 736
AfaI	GTAC	2 cut(s)	383, 572
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgsI	TTSAA	4 cut(s)	176, 296, 422, 691
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	5 cut(s)	28, 309, 697, 704, 720
AluI	AGCT	5 cut(s)	28, 309, 697, 704, 720
Alw26I	GTCTC	2 cut(s)	179, 618
AlwI	GGATC	2 cut(s)	47, 736
AoxI	GGCC	1 cut(s)	575
ApeKI	GCWGC	2 cut(s)	412, 529
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BaeI	ACNNNNGTAYC	2 cut(s)	654, 687
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	340
BbvI	GCAGC	2 cut(s)	424, 541
BccI	CCATC	3 cut(s)	217, 296, 544
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	179, 618
BfaI	CTAG	2 cut(s)	18, 263
BfmI	CTRYAG	1 cut(s)	189
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	2 cut(s)	413, 530
BlsI	GCNGC	2 cut(s)	414, 531
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	2 cut(s)	228, 285
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	3 cut(s)	4, 186, 537
BpiI	GAAGAC	1 cut(s)	340
BpuEI	CTTGAG	2 cut(s)	14, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	3 cut(s)	578, 640, 649
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	536
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	4 cut(s)	114, 222, 533, 723
BseNI	ACTGG	3 cut(s)	578, 640, 649
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	2 cut(s)	424, 541
BseYI	CCCAGC	1 cut(s)	486
BsgI	GTGCAG	1 cut(s)	431
BshFI	GGCC	1 cut(s)	577
BshNI	GGYRCC	1 cut(s)	283
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	179, 618
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	4 cut(s)	52, 323, 588, 728
BspACI	CCGC	1 cut(s)	584
BspANI	GGCC	1 cut(s)	577
BspCNI	CTCAG	4 cut(s)	115, 223, 532, 724
BspHI	TCATGA	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	228, 285
BspPI	GGATC	2 cut(s)	47, 736
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	578, 640, 649
BssMI	GATC	4 cut(s)	52, 323, 588, 728
BssSI	CACGAG	1 cut(s)	723
Bst2BI	CACGAG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	106
BstAPI	GCANNNNNTGC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	5 cut(s)	123, 231, 519, 698, 732
BstF5I	GGATG	1 cut(s)	536
BstKTI	GATC	4 cut(s)	55, 326, 591, 731
BstMAI	GTCTC	2 cut(s)	179, 618
BstMBI	GATC	4 cut(s)	52, 323, 588, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 215, 529, 583
BstNI	CCWGG	1 cut(s)	106
BstNSI	RCATGY	2 cut(s)	137, 623
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	424, 541
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	2 cut(s)	588, 728
BstYI	RGATCY	2 cut(s)	588, 728
BsuRI	GGCC	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	536
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	225, 633
Cac8I	GCNNGC	1 cut(s)	402
CciI	TCATGA	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	382, 571
CviAII	CATG	5 cut(s)	38, 44, 134, 329, 620
CviJI	RGCY	8 cut(s)	28, 49, 309, 523, 577, 697, 704, 720
CviKI_1	RGCY	8 cut(s)	28, 49, 309, 523, 577, 697, 704, 720
CviQI	GTAC	2 cut(s)	382, 571
DdeI	CTNAG	5 cut(s)	123, 231, 519, 698, 732
DpnI	GATC	4 cut(s)	54, 325, 590, 730
DpnII	GATC	4 cut(s)	52, 323, 588, 728
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	5 cut(s)	41, 47, 137, 332, 623
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	5 cut(s)	37, 43, 133, 328, 619
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	413, 530
FokI	GGATG	1 cut(s)	523
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	413, 530
FspBI	CTAG	2 cut(s)	18, 263
GluI	GCNGC	2 cut(s)	413, 530
GsaI	CCCAGC	1 cut(s)	490
HaeIII	GGCC	1 cut(s)	577
Hin1II	CATG	5 cut(s)	41, 47, 137, 332, 623
HinfI	GANTC	2 cut(s)	374, 712
Hpy166II	GTNNAC	2 cut(s)	23, 129
Hpy188I	TCNGA	1 cut(s)	733
Hpy188III	TCNNGA	4 cut(s)	31, 44, 428, 544
Hpy8I	GTNNAC	2 cut(s)	23, 129
HpyAV	CCTTC	4 cut(s)	170, 513, 550, 561
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	6 cut(s)	145, 218, 352, 412, 442, 529
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 215, 529, 583
HpyF3I	CTNAG	5 cut(s)	123, 231, 519, 698, 732
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	5 cut(s)	41, 47, 137, 332, 623
Kzo9I	GATC	4 cut(s)	52, 323, 588, 728
Lsp1109I	GCAGC	2 cut(s)	424, 541
LweI	GCATC	3 cut(s)	4, 186, 537
MaeI	CTAG	2 cut(s)	18, 263
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	4 cut(s)	54, 325, 590, 730
MboI	GATC	4 cut(s)	52, 323, 588, 728
MboII	GAAGA	3 cut(s)	284, 345, 507
MflI	RGATCY	2 cut(s)	588, 728
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	4 cut(s)	162, 297, 359, 455
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	4 cut(s)	570, 573, 588, 606
MseI	TTAA	1 cut(s)	467
MslI	CAYNNNNRTG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	4 cut(s)	34, 215, 529, 583
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	4 cut(s)	52, 323, 588, 728
NlaIII	CATG	5 cut(s)	41, 47, 137, 332, 623
NlaIV	GGNNCC	2 cut(s)	228, 285
NmuCI	GTSAC	1 cut(s)	354
NspI	RCATGY	2 cut(s)	137, 623
PagI	TCATGA	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	712
PkrI	GCNGC	2 cut(s)	414, 531
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	228, 285
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
PsuI	RGATCY	2 cut(s)	588, 728
RsaI	GTAC	2 cut(s)	383, 572
RsaNI	GTAC	2 cut(s)	382, 571
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	467
SatI	GCNGC	2 cut(s)	413, 530
Sau3AI	GATC	4 cut(s)	52, 323, 588, 728
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	3 cut(s)	4, 186, 537
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	2 cut(s)	29, 426
SmoI	CTYRAG	2 cut(s)	29, 426
Sse9I	AATT	4 cut(s)	162, 297, 359, 455
SsiI	CCGC	1 cut(s)	584
SspMI	CTAG	2 cut(s)	18, 263
StyD4I	CCNGG	1 cut(s)	104
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	710
TasI	AATT	4 cut(s)	162, 297, 359, 455
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	1 cut(s)	712
Tru1I	TTAA	1 cut(s)	467
Tru9I	TTAA	1 cut(s)	467
TscAI	CASTG	2 cut(s)	225, 640
TseFI	GTSAC	1 cut(s)	354
TseI	GCWGC	2 cut(s)	412, 529
Tsp45I	GTSAC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	129, 696
TspRI	CASTG	2 cut(s)	225, 640
VpaK11BI	GGWCC	1 cut(s)	227
XceI	RCATGY	2 cut(s)	137, 623
XspI	CTAG	2 cut(s)	18, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.