Rh6AG013700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001007
Physical Location & Seq
Forward (+)
1455406 .. 1457030
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG013700.1

Sequence Viewer

Length: 258 bp
ATGACTGCAATGAAAGGAACTGCAGGAAGAAGAACTAGACTCGTGGGCTCGAGAAGAACTGGCTGCTGTGCCGTTGTGCTGCCTGTGCGTCTAGGAGGAGAGGAACTGGTAACTATTGAATGGAAACCTGAAGATCTTCCTCGTCTACCTCTCATAAAGCATAATATAATGGAAAGAGTTACTAAATATTGGAGAAGCTACAAGAACAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCACACCAGGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

85

Amino Acids

9.76

Weight (kDa)

10.57

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 145
AclWI GGATC 1 cut(s) 224
AcuI CTGAAG 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 119
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 198, 221
AluI AGCT 2 cut(s) 198, 221
AlwI GGATC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 63, 79
Asp700I GAANNNNTTC 1 cut(s) 135
AvaI CYCGRG 1 cut(s) 49
BanII GRGCYC 1 cut(s) 50
BauI CACGAG 1 cut(s) 41
BbvI GCAGC 2 cut(s) 50, 66
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 2 cut(s) 36, 92
BfmI CTRYAG 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 212
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 64, 80
BlsI GCNGC 2 cut(s) 65, 81
Bme1390I CCNGG 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 249
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 64, 111
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 249
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 15
BseNI ACTGG 2 cut(s) 64, 111
BseRI GAGGAG 1 cut(s) 111
BseXI GCAGC 2 cut(s) 50, 66
BsiHKCI CYCGRG 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 133, 229
BspMAI CTGCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 224
BspTI CTTAAG 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 2 cut(s) 64, 111
BssMI GATC 2 cut(s) 133, 229
BssSI CACGAG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 212
BstKTI GATC 2 cut(s) 136, 232
BstMBI GATC 2 cut(s) 133, 229
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 50, 66
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
CseI GACGC 1 cut(s) 77
CviJI RGCY 4 cut(s) 48, 63, 198, 221
CviKI_1 RGCY 4 cut(s) 48, 63, 198, 221
DpnI GATC 2 cut(s) 135, 231
DpnII GATC 2 cut(s) 133, 229
Eco24I GRGCYC 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 50
FaiI YATR 4 cut(s) 155, 162, 167, 228
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 64, 80
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 64, 80
FspBI CTAG 2 cut(s) 36, 92
GluI GCNGC 2 cut(s) 64, 80
HgaI GACGC 1 cut(s) 77
HinfI GANTC 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 146
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 2 cut(s) 8, 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpySE526I ACGT 1 cut(s) 253
Kzo9I GATC 2 cut(s) 133, 229
LpnPI CCDG 6 cut(s) 9, 45, 92, 96, 141, 234
Lsp1109I GCAGC 2 cut(s) 50, 66
MaeI CTAG 2 cut(s) 36, 92
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 109, 178
MalI GATC 2 cut(s) 135, 231
MboI GATC 2 cut(s) 133, 229
MboII GAAGA 5 cut(s) 39, 42, 66, 128, 143
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 50
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 4 cut(s) 89, 94, 150, 159
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 1 cut(s) 213
MspCI CTTAAG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 85
NdeII GATC 2 cut(s) 133, 229
PaeR7I CTCGAG 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 135
PkrI GCNGC 2 cut(s) 65, 81
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PstI CTGCAG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 133
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 64, 80
Sau3AI GATC 2 cut(s) 133, 229
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 50
SetI ASST 5 cut(s) 130, 151, 200, 223, 256
SfcI CTRYAG 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 49
SlaI CTCGAG 1 cut(s) 49
SmlI CTYRAG 2 cut(s) 49, 212
SmoI CTYRAG 2 cut(s) 49, 212
SspI AATATT 1 cut(s) 188
SspMI CTAG 2 cut(s) 36, 92
StyD4I CCNGG 1 cut(s) 247
TaiI ACGT 1 cut(s) 256
TaqI TCGA 1 cut(s) 50
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 2 cut(s) 63, 79
TspDTI ATGAA 1 cut(s) 26
Vha464I CTTAAG 1 cut(s) 212
XhoI CTCGAG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 2 cut(s) 36, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.