Transposase-associated domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 405 |
| AccB1I | GGYRCC | 3 cut(s) | 74, 827, 1117 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 332 |
| AccBSI | CCGCTC | 1 cut(s) | 961 |
| AccII | CGCG | 1 cut(s) | 1086 |
| AccIII | TCCGGA | 1 cut(s) | 37 |
| AciI | CCGC | 3 cut(s) | 961, 1086, 1418 |
| AclWI | GGATC | 2 cut(s) | 881, 1570 |
| AcsI | RAATTY | 2 cut(s) | 742, 784 |
| AcuI | CTGAAG | 2 cut(s) | 512, 582 |
| AfaI | GTAC | 6 cut(s) | 118, 437, 485, 712, 1217, 1406 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 37, 243, 332, 1469 |
| AflIII | ACRYGT | 1 cut(s) | 1453 |
| AgsI | TTSAA | 8 cut(s) | 58, 416, 691, 717, 1010, 1130, 1256, 1525 |
| AjnI | CCWGG | 3 cut(s) | 91, 439, 938 |
| AluBI | AGCT | 6 cut(s) | 141, 604, 1143, 1531, 1538, 1554 |
| AluI | AGCT | 6 cut(s) | 141, 604, 1143, 1531, 1538, 1554 |
| Alw21I | GWGCWC | 1 cut(s) | 701 |
| Alw26I | GTCTC | 2 cut(s) | 763, 1013 |
| AlwI | GGATC | 2 cut(s) | 881, 1570 |
| Aor13HI | TCCGGA | 1 cut(s) | 37 |
| AoxI | GGCC | 3 cut(s) | 468, 619, 1409 |
| ApeKI | GCWGC | 4 cut(s) | 163, 322, 1246, 1363 |
| ApoI | RAATTY | 2 cut(s) | 742, 784 |
| AspS9I | GGNCC | 3 cut(s) | 377, 619, 1061 |
| AvaII | GGWCC | 2 cut(s) | 377, 1061 |
| AxyI | CCTNAGG | 1 cut(s) | 387 |
| BaeGI | GKGCMC | 1 cut(s) | 79 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1488, 1521 |
| BanI | GGYRCC | 3 cut(s) | 74, 827, 1117 |
| BanII | GRGCYC | 1 cut(s) | 885 |
| BauI | CACGAG | 1 cut(s) | 1557 |
| BbsI | GAAGAC | 1 cut(s) | 1174 |
| Bbv12I | GWGCWC | 1 cut(s) | 701 |
| BbvI | GCAGC | 4 cut(s) | 175, 334, 1258, 1375 |
| BccI | CCATC | 5 cut(s) | 65, 281, 1051, 1130, 1378 |
| BceAI | ACGGC | 2 cut(s) | 15, 455 |
| BciT130I | CCWGG | 3 cut(s) | 93, 441, 940 |
| BcoDI | GTCTC | 2 cut(s) | 763, 1013 |
| BfaI | CTAG | 3 cut(s) | 207, 747, 1097 |
| BfmI | CTRYAG | 1 cut(s) | 1023 |
| BglII | AGATCT | 1 cut(s) | 1422 |
| BisI | GCNGC | 4 cut(s) | 164, 323, 1247, 1364 |
| BlpI | GCTNAGC | 1 cut(s) | 957 |
| BlsI | GCNGC | 4 cut(s) | 165, 324, 1248, 1365 |
| Bme1390I | CCNGG | 3 cut(s) | 93, 441, 940 |
| Bme18I | GGWCC | 2 cut(s) | 377, 1061 |
| BmgT120I | GGNCC | 3 cut(s) | 377, 619, 1061 |
| BmiI | GGNNCC | 5 cut(s) | 76, 378, 829, 1062, 1119 |
| BmrFI | CCNGG | 3 cut(s) | 93, 441, 940 |
| BmsI | GCATC | 5 cut(s) | 175, 409, 631, 1020, 1371 |
| BpiI | GAAGAC | 1 cut(s) | 1174 |
| Bpu10I | CCTNAGC | 1 cut(s) | 765 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 957 |
| BpuEI | CTTGAG | 1 cut(s) | 848 |
| BsaJI | CCNNGG | 2 cut(s) | 91, 439 |
| BsaWI | WCCGGW | 1 cut(s) | 37 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 327, 357, 509, 539, 1193, 1223 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 37, 243, 332, 1469 |
| Bse1I | ACTGG | 4 cut(s) | 755, 1412, 1474, 1483 |
| Bse21I | CCTNAGG | 1 cut(s) | 387 |
| Bse3DI | GCAATG | 1 cut(s) | 1302 |
| BseAI | TCCGGA | 1 cut(s) | 37 |
| BseBI | CCWGG | 3 cut(s) | 93, 441, 940 |
| BseDI | CCNNGG | 2 cut(s) | 91, 439 |
| BseGI | GGATG | 3 cut(s) | 292, 449, 1370 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 37, 243, 332, 1469 |
| BseMI | GCAATG | 1 cut(s) | 1302 |
| BseMII | CTCAG | 9 cut(s) | 378, 716, 729, 768, 948, 1056, 1274, 1367, 1557 |
| BseNI | ACTGG | 4 cut(s) | 755, 1412, 1474, 1483 |
| BseRI | GAGGAG | 2 cut(s) | 288, 1386 |
| BseSI | GKGCMC | 1 cut(s) | 79 |
| BseXI | GCAGC | 4 cut(s) | 175, 334, 1258, 1375 |
| BseYI | CCCAGC | 1 cut(s) | 1320 |
| BsgI | GTGCAG | 2 cut(s) | 341, 1265 |
| Bsh1236I | CGCG | 1 cut(s) | 1086 |
| BshFI | GGCC | 3 cut(s) | 470, 621, 1411 |
| BshNI | GGYRCC | 3 cut(s) | 74, 827, 1117 |
| BsiHKAI | GWGCWC | 1 cut(s) | 701 |
| BsiSI | CCGG | 1 cut(s) | 38 |
| BslFI | GGGAC | 3 cut(s) | 390, 633, 1074 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 37, 243, 332, 1469 |
| BsmAI | GTCTC | 2 cut(s) | 763, 1013 |
| BsmFI | GGGAC | 3 cut(s) | 390, 633, 1074 |
| BsnI | GGCC | 3 cut(s) | 470, 621, 1411 |
| Bsp1286I | GDGCHC | 3 cut(s) | 79, 701, 885 |
| Bsp13I | TCCGGA | 1 cut(s) | 37 |
| Bsp1407I | TGTACA | 1 cut(s) | 116 |
| Bsp143I | GATC | 5 cut(s) | 25, 886, 1157, 1422, 1562 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 957 |
| BspACI | CCGC | 3 cut(s) | 961, 1086, 1418 |
| BspANI | GGCC | 3 cut(s) | 470, 621, 1411 |
| BspCNI | CTCAG | 9 cut(s) | 379, 715, 730, 769, 949, 1057, 1273, 1366, 1558 |
| BspEI | TCCGGA | 1 cut(s) | 37 |
| BspFNI | CGCG | 1 cut(s) | 1086 |
| BspHI | TCATGA | 1 cut(s) | 877 |
| BspLI | GGNNCC | 5 cut(s) | 76, 378, 829, 1062, 1119 |
| BspPI | GGATC | 2 cut(s) | 881, 1570 |
| BspT107I | GGYRCC | 3 cut(s) | 74, 827, 1117 |
| BsrBI | CCGCTC | 1 cut(s) | 961 |
| BsrDI | GCAATG | 1 cut(s) | 1302 |
| BsrGI | TGTACA | 1 cut(s) | 116 |
| BsrI | ACTGG | 4 cut(s) | 755, 1412, 1474, 1483 |
| BssECI | CCNNGG | 2 cut(s) | 91, 439 |
| BssMI | GATC | 5 cut(s) | 25, 886, 1157, 1422, 1562 |
| BssSI | CACGAG | 1 cut(s) | 1557 |
| Bst2BI | CACGAG | 1 cut(s) | 1557 |
| Bst2UI | CCWGG | 3 cut(s) | 93, 441, 940 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1049 |
| BstAUI | TGTACA | 1 cut(s) | 116 |
| BstC8I | GCNNGC | 3 cut(s) | 293, 844, 1236 |
| BstF5I | GGATG | 3 cut(s) | 292, 449, 1370 |
| BstFNI | CGCG | 1 cut(s) | 1086 |
| BstKTI | GATC | 5 cut(s) | 28, 889, 1160, 1425, 1565 |
| BstMAI | GTCTC | 2 cut(s) | 763, 1013 |
| BstMBI | GATC | 5 cut(s) | 25, 886, 1157, 1422, 1562 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1049, 1417, 1444 |
| BstNI | CCWGG | 3 cut(s) | 93, 441, 940 |
| BstNSI | RCATGY | 3 cut(s) | 295, 971, 1457 |
| BstSCI | CCNGG | 3 cut(s) | 91, 439, 938 |
| BstSFI | CTRYAG | 1 cut(s) | 1023 |
| BstSLI | GKGCMC | 1 cut(s) | 79 |
| BstUI | CGCG | 1 cut(s) | 1086 |
| BstV1I | GCAGC | 4 cut(s) | 175, 334, 1258, 1375 |
| BstV2I | GAAGAC | 1 cut(s) | 1174 |
| BstX2I | RGATCY | 2 cut(s) | 1422, 1562 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 535 |
| BstYI | RGATCY | 2 cut(s) | 1422, 1562 |
| Bsu36I | CCTNAGG | 1 cut(s) | 387 |
| BsuRI | GGCC | 3 cut(s) | 470, 621, 1411 |
| BtsCI | GGATG | 3 cut(s) | 292, 449, 1370 |
| BtsI | GCAGTG | 1 cut(s) | 1059 |
| BtsIMutI | CAGTG | 3 cut(s) | 710, 1059, 1467 |
| Cac8I | GCNNGC | 3 cut(s) | 293, 844, 1236 |
| CciI | TCATGA | 1 cut(s) | 877 |
| Cfr13I | GGNCC | 3 cut(s) | 377, 619, 1061 |
| Csp6I | GTAC | 6 cut(s) | 117, 436, 484, 711, 1216, 1405 |
| CviAII | CATG | 8 cut(s) | 114, 221, 292, 872, 878, 968, 1163, 1454 |
| CviQI | GTAC | 6 cut(s) | 117, 436, 484, 711, 1216, 1405 |
| DpnI | GATC | 5 cut(s) | 27, 888, 1159, 1424, 1564 |
| DpnII | GATC | 5 cut(s) | 25, 886, 1157, 1422, 1562 |
| Eco24I | GRGCYC | 1 cut(s) | 885 |
| Eco47I | GGWCC | 2 cut(s) | 377, 1061 |
| Eco57I | CTGAAG | 2 cut(s) | 512, 582 |
| Eco81I | CCTNAGG | 1 cut(s) | 387 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1061 |
| EcoRI | GAATTC | 2 cut(s) | 742, 784 |
| EcoRII | CCWGG | 3 cut(s) | 91, 439, 938 |
| EcoT38I | GRGCYC | 1 cut(s) | 885 |
| FaeI | CATG | 8 cut(s) | 117, 224, 295, 875, 881, 971, 1166, 1457 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 288, 320 |
| FaqI | GGGAC | 3 cut(s) | 390, 633, 1074 |
| FatI | CATG | 8 cut(s) | 113, 220, 291, 871, 877, 967, 1162, 1453 |
| FauNDI | CATATG | 1 cut(s) | 1045 |
| Fnu4HI | GCNGC | 4 cut(s) | 164, 323, 1247, 1364 |
| FokI | GGATG | 3 cut(s) | 299, 456, 1357 |
| FriOI | GRGCYC | 1 cut(s) | 885 |
| Fsp4HI | GCNGC | 4 cut(s) | 164, 323, 1247, 1364 |
| FspBI | CTAG | 3 cut(s) | 207, 747, 1097 |
| GluI | GCNGC | 4 cut(s) | 164, 323, 1247, 1364 |
| GsaI | CCCAGC | 1 cut(s) | 1324 |
| HaeIII | GGCC | 3 cut(s) | 470, 621, 1411 |
| HapII | CCGG | 1 cut(s) | 38 |
| Hin1II | CATG | 8 cut(s) | 117, 224, 295, 875, 881, 971, 1166, 1457 |
| HindIII | AAGCTT | 1 cut(s) | 139 |
| HinfI | GANTC | 5 cut(s) | 227, 581, 734, 1208, 1546 |
| HpaII | CCGG | 1 cut(s) | 38 |
| Hpy166II | GTNNAC | 1 cut(s) | 436 |
| Hpy188I | TCNGA | 3 cut(s) | 729, 739, 1567 |
| Hpy188III | TCNNGA | 7 cut(s) | 38, 134, 717, 865, 878, 1262, 1378 |
| Hpy8I | GTNNAC | 1 cut(s) | 436 |
| HpyAV | CCTTC | 6 cut(s) | 208, 557, 1004, 1347, 1384, 1395 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4IV | ACGT | 1 cut(s) | 1072 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1049, 1417, 1444 |
| HpySE526I | ACGT | 1 cut(s) | 1072 |
| Hsp92II | CATG | 8 cut(s) | 117, 224, 295, 875, 881, 971, 1166, 1457 |
| Kpn2I | TCCGGA | 1 cut(s) | 37 |
| Kzo9I | GATC | 5 cut(s) | 25, 886, 1157, 1422, 1562 |
| LmnI | GCTCC | 2 cut(s) | 217, 275 |
| Lsp1109I | GCAGC | 4 cut(s) | 175, 334, 1258, 1375 |
| LweI | GCATC | 5 cut(s) | 175, 409, 631, 1020, 1371 |
| MaeI | CTAG | 3 cut(s) | 207, 747, 1097 |
| MaeII | ACGT | 1 cut(s) | 1072 |
| MaeIII | GTNAC | 4 cut(s) | 86, 512, 1073, 1188 |
| MalI | GATC | 5 cut(s) | 27, 888, 1159, 1424, 1564 |
| MbiI | CCGCTC | 1 cut(s) | 961 |
| MboI | GATC | 5 cut(s) | 25, 886, 1157, 1422, 1562 |
| MboII | GAAGA | 7 cut(s) | 162, 428, 646, 793, 1118, 1179, 1341 |
| MfeI | CAATTG | 2 cut(s) | 330, 1181 |
| MflI | RGATCY | 2 cut(s) | 1422, 1562 |
| MhlI | GDGCHC | 3 cut(s) | 79, 701, 885 |
| MlyI | GAGTC | 2 cut(s) | 236, 1217 |
| MmeI | TCCRAC | 1 cut(s) | 444 |
| MroI | TCCGGA | 1 cut(s) | 37 |
| MseI | TTAA | 4 cut(s) | 306, 456, 546, 1301 |
| MslI | CAYNNNNRTG | 1 cut(s) | 876 |
| MspI | CCGG | 1 cut(s) | 38 |
| MspR9I | CCNGG | 3 cut(s) | 93, 441, 940 |
| MunI | CAATTG | 2 cut(s) | 330, 1181 |
| MvaI | CCWGG | 3 cut(s) | 93, 441, 940 |
| MvnI | CGCG | 1 cut(s) | 1086 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1049, 1417, 1444 |
| NdeI | CATATG | 1 cut(s) | 1045 |
| NdeII | GATC | 5 cut(s) | 25, 886, 1157, 1422, 1562 |
| NlaIII | CATG | 8 cut(s) | 117, 224, 295, 875, 881, 971, 1166, 1457 |
| NlaIV | GGNNCC | 5 cut(s) | 76, 378, 829, 1062, 1119 |
| NmeAIII | GCCGAG | 1 cut(s) | 740 |
| NmuCI | GTSAC | 3 cut(s) | 512, 1073, 1188 |
| NspI | RCATGY | 3 cut(s) | 295, 971, 1457 |
| PaeI | GCATGC | 1 cut(s) | 295 |
| PagI | TCATGA | 1 cut(s) | 877 |
| PciI | ACATGT | 1 cut(s) | 1453 |
| PfeI | GAWTC | 3 cut(s) | 581, 734, 1546 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 332 |
| PkrI | GCNGC | 4 cut(s) | 165, 324, 1248, 1365 |
| PleI | GAGTC | 2 cut(s) | 235, 1216 |
| PpsI | GAGTC | 2 cut(s) | 235, 1216 |
| PpuMI | RGGWCCY | 1 cut(s) | 1061 |
| PscI | ACATGT | 1 cut(s) | 1453 |
| PsiI | TTATAA | 1 cut(s) | 405 |
| Psp5II | RGGWCCY | 1 cut(s) | 1061 |
| Psp6I | CCWGG | 3 cut(s) | 91, 439, 938 |
| PspFI | CCCAGC | 1 cut(s) | 1320 |
| PspGI | CCWGG | 3 cut(s) | 91, 439, 938 |
| PspN4I | GGNNCC | 5 cut(s) | 76, 378, 829, 1062, 1119 |
| PspPI | GGNCC | 3 cut(s) | 377, 619, 1061 |
| PspPPI | RGGWCCY | 1 cut(s) | 1061 |
| PsuI | RGATCY | 2 cut(s) | 1422, 1562 |
| RsaI | GTAC | 6 cut(s) | 118, 437, 485, 712, 1217, 1406 |
| RsaNI | GTAC | 6 cut(s) | 117, 436, 484, 711, 1216, 1405 |
| RseI | CAYNNNNRTG | 1 cut(s) | 876 |
| SaqAI | TTAA | 4 cut(s) | 306, 456, 546, 1301 |
| SatI | GCNGC | 4 cut(s) | 164, 323, 1247, 1364 |
| Sau3AI | GATC | 5 cut(s) | 25, 886, 1157, 1422, 1562 |
| Sau96I | GGNCC | 3 cut(s) | 377, 619, 1061 |
| SchI | GAGTC | 2 cut(s) | 236, 1217 |
| ScrFI | CCNGG | 3 cut(s) | 93, 441, 940 |
| SduI | GDGCHC | 3 cut(s) | 79, 701, 885 |
| SfaNI | GCATC | 5 cut(s) | 175, 409, 631, 1020, 1371 |
| SfcI | CTRYAG | 1 cut(s) | 1023 |
| SinI | GGWCC | 2 cut(s) | 377, 1061 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 876 |
| SmlI | CTYRAG | 1 cut(s) | 863 |
| SmoI | CTYRAG | 1 cut(s) | 863 |
| SphI | GCATGC | 1 cut(s) | 295 |
| SsiI | CCGC | 3 cut(s) | 961, 1086, 1418 |
| SspMI | CTAG | 3 cut(s) | 207, 747, 1097 |
| StyD4I | CCNGG | 3 cut(s) | 91, 439, 938 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaiI | ACGT | 1 cut(s) | 1075 |
| TaqI | TCGA | 3 cut(s) | 796, 850, 1544 |
| TatI | WGTACW | 2 cut(s) | 116, 1404 |
| TfiI | GAWTC | 3 cut(s) | 581, 734, 1546 |
| Tru1I | TTAA | 4 cut(s) | 306, 456, 546, 1301 |
| Tru9I | TTAA | 4 cut(s) | 306, 456, 546, 1301 |
| TscAI | CASTG | 3 cut(s) | 710, 1059, 1474 |
| TseFI | GTSAC | 3 cut(s) | 512, 1073, 1188 |
| TseI | GCWGC | 4 cut(s) | 163, 322, 1246, 1363 |
| Tsp45I | GTSAC | 3 cut(s) | 512, 1073, 1188 |
| TspDTI | ATGAA | 4 cut(s) | 8, 215, 963, 1530 |
| TspGWI | ACGGA | 1 cut(s) | 934 |
| TspRI | CASTG | 3 cut(s) | 710, 1059, 1474 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 332 |
| VpaK11BI | GGWCC | 2 cut(s) | 377, 1061 |
| XapI | RAATTY | 2 cut(s) | 742, 784 |
| XceI | RCATGY | 3 cut(s) | 295, 971, 1457 |
| XspI | CTAG | 3 cut(s) | 207, 747, 1097 |