pycom02g26430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0001007
Physical Location & Seq
Forward (+)
24213728 .. 24215035
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g26430.1

Sequence Viewer

Length: 1008 bp
ATGCCCCTCATCCGCCTTATGACGCTTTCTATTGCCGAGCATGCACATAAAGAATACAGGAATTATTTGAAGAAAATCTTCTATAGTCGCAGACAAGGGGAGGATCGCTTACAGTGTCCTCCTAATGTAGATCCCGGCCAGTGGGTGGAGATGGTGCGATATTGGGATAATCCAAAAACGATGGAGAAGGCTGAAAAAAATAGGATCAATCGTCAAACCAAAACTATGAACCACACAACAGGATCAAAGACATTTGTCAGAGTTCGGGAAGAATATAGGAAGGAGCACGGAGAAGAACCAGATCCTATTGTTTTCTTTCGCATGACCCATTCACGGAAAGATAGTACATGGGTTGATGAAACGGCTCAACAAAAAGGGGCATCTATGGAGACGGTCGTTCAATCTAAGGTTGAGGATGGAGCAGAAGACACTCCTGAACTTCGAACTCTAGTCTATGTCGAGGAGATGGGTCCAGAGAATAGGAATAGAGTTCGAGGTTATGGACATGGGGTGACACCTGTGATGGTGCCGTATGCTGCTACTAGTTCATCAAAGAGATCATCGAGTAGTCGAGAAGCCATTGTGCAGGCTGAGAACCTTGAATTGAGGAAGAATGATGAGGCTTGTACTAAAGAGTTAGGGGAGTTACGGACCCAGCTTCAGCAAATACAGGCGACGCAGCAGCAGATGAACCAGCAGCAGCAGATGATGATGATGATGTTTATGCAAGGTATGCAGCAGCCACAGACTTACCTGCCCAGCCCCCAGGCACCGCAGCAATCAGAGAGAGAGGGAGGGAGAAGGGGGGAGAGCAGTCGTCATCTTCAGCAAATACAGGCGACGCAACAACAGATGAACCAGCAGCAGATGATGATGATGATGATGTTTAGGCAGGGTATGCAGCAGCCACAGATTTACCCGCACAGCCCTCAGGCACCACAGCATTCAGAGAGAGAGGGAGGGAGAAGGAAGGAGAGCAGTCGCAAAAAGATGAGAAGGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

336

Amino Acids

39.33

Weight (kDa)

9.65

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 45 - 173 2e-28 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 762
AccB1I GGYRCC 3 cut(s) 526, 769, 934
AccB7I CCANNNNNTGG 1 cut(s) 145
AciI CCGC 3 cut(s) 13, 773, 920
AclWI GGATC 5 cut(s) 111, 125, 212, 250, 296
AcoI YGGCCR 1 cut(s) 136
AcuI CTGAAG 2 cut(s) 644, 809
AfaI GTAC 2 cut(s) 346, 628
AfiI CCNNNNNNNGG 3 cut(s) 141, 145, 333
AgsI TTSAA 3 cut(s) 70, 401, 602
AhlI ACTAGT 1 cut(s) 542
AjnI CCWGG 1 cut(s) 765
AluBI AGCT 1 cut(s) 658
AluI AGCT 1 cut(s) 658
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 5 cut(s) 111, 125, 212, 250, 296
AoxI GGCC 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 470, 651
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 523
AsuII TTCGAA 1 cut(s) 442
AvaII GGWCC 2 cut(s) 470, 651
AxyI CCTNAGG 1 cut(s) 930
BanI GGYRCC 3 cut(s) 526, 769, 934
BbsI GAAGAC 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 288
BccI CCATC 5 cut(s) 145, 175, 410, 460, 517
BceAI ACGGC 2 cut(s) 378, 514
BciT130I CCWGG 1 cut(s) 767
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 383
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 2 cut(s) 449, 543
BfmI CTRYAG 1 cut(s) 82
BfuAI ACCTGC 1 cut(s) 762
Bme1390I CCNGG 2 cut(s) 135, 767
Bme18I GGWCC 2 cut(s) 470, 651
BmgT120I GGNCC 2 cut(s) 470, 651
BmiI GGNNCC 5 cut(s) 471, 528, 653, 771, 936
BmrFI CCNGG 2 cut(s) 135, 767
BmsI GCATC 1 cut(s) 389
BoxI GACNNNNGTC 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 432
Bpu14I TTCGAA 1 cut(s) 442
BpuMI CCSGG 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 765
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 145, 333
Bse1I ACTGG 1 cut(s) 139
Bse21I CCTNAGG 1 cut(s) 930
BseBI CCWGG 1 cut(s) 767
BseDI CCNNGG 1 cut(s) 765
BseGI GGATG 2 cut(s) 9, 421
BseLI CCNNNNNNNGG 3 cut(s) 141, 145, 333
BseMII CTCAG 2 cut(s) 582, 944
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 476
BseYI CCCAGC 2 cut(s) 654, 758
BsgI GTGCAG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 1 cut(s) 138
BshNI GGYRCC 3 cut(s) 526, 769, 934
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 1 cut(s) 288
BsiSI CCGG 1 cut(s) 135
BslI CCNNNNNNNGG 3 cut(s) 141, 145, 333
BsmAI GTCTC 1 cut(s) 383
BsmBI CGTCTC 1 cut(s) 383
BsmI GAATGC 1 cut(s) 943
BsnI GGCC 1 cut(s) 138
Bsp119I TTCGAA 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 6 cut(s) 103, 130, 204, 242, 301, 557
BspACI CCGC 3 cut(s) 13, 773, 920
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 583, 943
BspLI GGNNCC 5 cut(s) 471, 528, 653, 771, 936
BspMI ACCTGC 1 cut(s) 762
BspPI GGATC 5 cut(s) 111, 125, 212, 250, 296
BspT104I TTCGAA 1 cut(s) 442
BspT107I GGYRCC 3 cut(s) 526, 769, 934
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 1 cut(s) 765
BssMI GATC 6 cut(s) 103, 130, 204, 242, 301, 557
Bst2UI CCWGG 1 cut(s) 767
Bst4CI ACNGT 2 cut(s) 114, 394
BstAPI GCANNNNNTGC 2 cut(s) 733, 898
BstBI TTCGAA 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 42, 588
BstDEI CTNAG 3 cut(s) 405, 591, 930
BstF5I GGATG 2 cut(s) 9, 421
BstKTI GATC 6 cut(s) 106, 133, 207, 245, 304, 560
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 6 cut(s) 103, 130, 204, 242, 301, 557
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 3 cut(s) 41, 733, 898
BstNI CCWGG 1 cut(s) 767
BstNSI RCATGY 1 cut(s) 44
BstPAI GACNNNNGTC 1 cut(s) 254
BstSCI CCNGG 2 cut(s) 133, 765
BstSFI CTRYAG 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 432
BstX2I RGATCY 2 cut(s) 130, 301
BstYI RGATCY 2 cut(s) 130, 301
Bsu36I CCTNAGG 1 cut(s) 930
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 2 cut(s) 9, 421
BtsIMutI CAGTG 2 cut(s) 119, 146
BveI ACCTGC 1 cut(s) 762
Cac8I GCNNGC 2 cut(s) 42, 588
Cfr13I GGNCC 2 cut(s) 470, 651
CseI GACGC 3 cut(s) 31, 685, 850
Csp6I GTAC 2 cut(s) 345, 627
CviAII CATG 4 cut(s) 41, 322, 348, 506
CviQI GTAC 2 cut(s) 345, 627
DdeI CTNAG 3 cut(s) 405, 591, 930
DpnI GATC 6 cut(s) 105, 132, 206, 244, 303, 559
DpnII GATC 6 cut(s) 103, 130, 204, 242, 301, 557
EaeI YGGCCR 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 470, 651
Eco57I CTGAAG 2 cut(s) 644, 809
Eco81I CCTNAGG 1 cut(s) 930
EcoRII CCWGG 1 cut(s) 765
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 4 cut(s) 44, 325, 351, 509
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 4 cut(s) 40, 321, 347, 505
FauI CCCGC 1 cut(s) 927
FokI GGATG 1 cut(s) 428
FspBI CTAG 2 cut(s) 449, 543
GsaI CCCAGC 2 cut(s) 658, 762
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 135
HgaI GACGC 3 cut(s) 31, 685, 850
Hin1II CATG 4 cut(s) 44, 325, 351, 509
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 523
Hpy188I TCNGA 3 cut(s) 260, 784, 949
Hpy188III TCNNGA 4 cut(s) 266, 434, 473, 572
Hpy99I CGWCG 2 cut(s) 679, 844
HpyAV CCTTC 6 cut(s) 181, 274, 795, 960, 964, 990
HpyCH4III ACNGT 2 cut(s) 114, 394
HpyCH4V TGCA 5 cut(s) 44, 586, 727, 736, 901
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 733, 898
HpyF3I CTNAG 3 cut(s) 405, 591, 930
Hsp92II CATG 4 cut(s) 44, 325, 351, 509
Kzo9I GATC 6 cut(s) 103, 130, 204, 242, 301, 557
LmnI GCTCC 2 cut(s) 283, 419
LweI GCATC 1 cut(s) 389
MaeI CTAG 2 cut(s) 449, 543
MaeIII GTNAC 2 cut(s) 511, 645
MalI GATC 6 cut(s) 105, 132, 206, 244, 303, 559
MboI GATC 6 cut(s) 103, 130, 204, 242, 301, 557
MboII GAAGA 7 cut(s) 70, 82, 281, 305, 437, 622, 815
MflI RGATCY 2 cut(s) 130, 301
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 2 cut(s) 61, 602
MroXI GAANNNNTTC 1 cut(s) 77
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 2 cut(s) 135, 767
Mva1269I GAATGC 1 cut(s) 943
MvaI CCWGG 1 cut(s) 767
MwoI GCNNNNNNNGC 3 cut(s) 41, 733, 898
NciI CCSGG 1 cut(s) 135
NdeII GATC 6 cut(s) 103, 130, 204, 242, 301, 557
NlaIII CATG 4 cut(s) 44, 325, 351, 509
NlaIV GGNNCC 5 cut(s) 471, 528, 653, 771, 936
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 1 cut(s) 44
NspV TTCGAA 1 cut(s) 442
PaeI GCATGC 1 cut(s) 44
PctI GAATGC 1 cut(s) 943
PdmI GAANNNNTTC 1 cut(s) 77
PflMI CCANNNNNTGG 1 cut(s) 145
PshAI GACNNNNGTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 765
PspFI CCCAGC 2 cut(s) 654, 758
PspGI CCWGG 1 cut(s) 765
PspN4I GGNNCC 5 cut(s) 471, 528, 653, 771, 936
PspPI GGNCC 2 cut(s) 470, 651
PsuI RGATCY 2 cut(s) 130, 301
RsaI GTAC 2 cut(s) 346, 628
RsaNI GTAC 2 cut(s) 345, 627
Sau3AI GATC 6 cut(s) 103, 130, 204, 242, 301, 557
Sau96I GGNCC 2 cut(s) 470, 651
ScrFI CCNGG 2 cut(s) 135, 767
SduI GDGCHC 1 cut(s) 288
SetI ASST 7 cut(s) 411, 499, 520, 600, 660, 733, 756
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 442
SinI GGWCC 2 cut(s) 470, 651
SpeI ACTAGT 1 cut(s) 542
SphI GCATGC 1 cut(s) 44
Sse9I AATT 2 cut(s) 61, 602
SsiI CCGC 3 cut(s) 13, 773, 920
SspMI CTAG 2 cut(s) 449, 543
StyD4I CCNGG 2 cut(s) 133, 765
TaaI ACNGT 2 cut(s) 114, 394
TaqI TCGA 5 cut(s) 442, 459, 493, 563, 571
TasI AATT 2 cut(s) 61, 602
TatI WGTACW 2 cut(s) 344, 626
TscAI CASTG 2 cut(s) 119, 146
TseFI GTSAC 1 cut(s) 511
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 5 cut(s) 242, 372, 537, 704, 869
TspGWI ACGGA 3 cut(s) 303, 349, 664
TspRI CASTG 2 cut(s) 119, 146
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 2 cut(s) 470, 651
XceI RCATGY 1 cut(s) 44
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 2 cut(s) 449, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.