Rh3BG275800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001007
Physical Location & Seq
Forward (+)
27018776 .. 27021039
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG275800.1

Sequence Viewer

Length: 513 bp
ATGCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTATGATAAGCATACACGGAATGACGAAGAAAAAACATGGATTGATGAAGTTGCTGAGCGGACACACGCTGGTATGCAAGAGAAGTTGGTAGAAATTGTTGTAGTTGAAGGTAATGAGACTACAAAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACGTCACAGATTTCGCGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAACAAGAGCAAGCACAGGTGCAGCAAGTTCAAACTCAGGAACAACTCTTGCAAACCCAACGAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCACAACAATCTTCTCAGCCTTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCCTCAAATATGGATTCACTGTTTCTTTCCAATGCCAATCGAACTGGTGTACTAGTGTGCATCACACGCGTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

170

Amino Acids

18.89

Weight (kDa)

8.76

Isoelectric Point (pI)

23.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 103
AccII CGCG 2 cut(s) 228, 504
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 23
AfaI GTAC 2 cut(s) 258, 486
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 2 cut(s) 152, 297
AhlI ACTAGT 1 cut(s) 487
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 287, 404
AspS9I GGNCC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 27
BbvI GCAGC 2 cut(s) 299, 416
BccI CCATC 2 cut(s) 193, 419
BcoDI GTCTC 1 cut(s) 155
BcuI ACTAGT 1 cut(s) 487
BfaI CTAG 1 cut(s) 488
BisI GCNGC 2 cut(s) 288, 405
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 2 cut(s) 289, 406
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 204
BmsI GCATC 3 cut(s) 162, 412, 504
Bpu1102I GCTNAGC 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bse1I ACTGG 1 cut(s) 484
Bse3DI GCAATG 1 cut(s) 343
BseGI GGATG 1 cut(s) 411
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 4 cut(s) 90, 198, 315, 408
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 1 cut(s) 427
BseXI GCAGC 2 cut(s) 299, 416
BseYI CCCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 306
Bsh1236I CGCG 2 cut(s) 228, 504
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 28
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 1 cut(s) 103
BspCNI CTCAG 4 cut(s) 91, 199, 314, 407
BspFNI CGCG 2 cut(s) 228, 504
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 1 cut(s) 484
BssMI GATC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 456
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 4 cut(s) 99, 207, 301, 394
BstF5I GGATG 1 cut(s) 411
BstFNI CGCG 2 cut(s) 228, 504
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 4 cut(s) 10, 191, 404, 501
BstUI CGCG 2 cut(s) 228, 504
BstV1I GCAGC 2 cut(s) 299, 416
BtsCI GGATG 1 cut(s) 411
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 2 cut(s) 201, 452
Cac8I GCNNGC 1 cut(s) 277
CciI TCATGA 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 2 cut(s) 217, 493
Csp6I GTAC 2 cut(s) 257, 485
CviAII CATG 3 cut(s) 14, 20, 81
CviJI RGCY 2 cut(s) 25, 398
CviKI_1 RGCY 2 cut(s) 25, 398
CviQI GTAC 2 cut(s) 257, 485
DdeI CTNAG 4 cut(s) 99, 207, 301, 394
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 3 cut(s) 17, 23, 84
FaqI GGGAC 1 cut(s) 216
FatI CATG 3 cut(s) 13, 19, 80
FauNDI CATATG 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 288, 405
FokI GGATG 1 cut(s) 398
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 288, 405
FspBI CTAG 1 cut(s) 488
GluI GCNGC 2 cut(s) 288, 405
GsaI CCCAGC 1 cut(s) 365
HgaI GACGC 2 cut(s) 217, 493
Hin1II CATG 3 cut(s) 17, 23, 84
HinfI GANTC 2 cut(s) 249, 449
Hpy166II GTNNAC 1 cut(s) 485
Hpy188III TCNNGA 4 cut(s) 7, 20, 303, 419
Hpy8I GTNNAC 1 cut(s) 485
HpyAV CCTTC 4 cut(s) 146, 388, 425, 436
HpyCH4III ACNGT 1 cut(s) 456
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 6 cut(s) 121, 194, 287, 317, 404, 495
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 191, 404, 501
HpyF3I CTNAG 4 cut(s) 99, 207, 301, 394
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 3 cut(s) 17, 23, 84
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 7 cut(s) 99, 219, 267, 288, 375, 432, 465
Lsp1109I GCAGC 2 cut(s) 299, 416
LweI GCATC 3 cut(s) 162, 412, 504
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 2 cut(s) 215, 229
MalI GATC 1 cut(s) 30
MbiI CCGCTC 1 cut(s) 103
MboI GATC 1 cut(s) 28
MboII GAAGA 2 cut(s) 83, 382
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 4 cut(s) 138, 234, 330, 508
MluI ACGCGT 1 cut(s) 502
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 2 cut(s) 445, 448
MseI TTAA 2 cut(s) 342, 511
MslI CAYNNNNRTG 1 cut(s) 18
MvnI CGCG 2 cut(s) 228, 504
MwoI GCNNNNNNNGC 4 cut(s) 10, 191, 404, 501
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 28
NlaIII CATG 3 cut(s) 17, 23, 84
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 215, 229
PagI TCATGA 1 cut(s) 19
PfeI GAWTC 1 cut(s) 449
PkrI GCNGC 2 cut(s) 289, 406
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
PpuMI RGGWCCY 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 361
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 203
PspPPI RGGWCCY 1 cut(s) 203
RsaI GTAC 2 cut(s) 258, 486
RsaNI GTAC 2 cut(s) 257, 485
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 342, 511
SatI GCNGC 2 cut(s) 288, 405
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 258
SduI GDGCHC 1 cut(s) 27
SetI ASST 5 cut(s) 157, 208, 217, 286, 380
SfaNI GCATC 3 cut(s) 162, 412, 504
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SpeI ACTAGT 1 cut(s) 487
Sse9I AATT 4 cut(s) 138, 234, 330, 508
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 488
TaaI ACNGT 1 cut(s) 456
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 475
TasI AATT 4 cut(s) 138, 234, 330, 508
TatI WGTACW 1 cut(s) 484
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 2 cut(s) 342, 511
Tru9I TTAA 2 cut(s) 342, 511
TscAI CASTG 2 cut(s) 201, 459
TseFI GTSAC 2 cut(s) 215, 229
TseI GCWGC 2 cut(s) 287, 404
Tsp45I GTSAC 2 cut(s) 215, 229
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 76
TspRI CASTG 2 cut(s) 201, 459
VpaK11BI GGWCC 1 cut(s) 203
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.