RLG00000002408

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001007
Physical Location & Seq
Reverse (-)
33647672 .. 33648268
597 bp
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UTR
Exon/CDS
Intron
RLM00000002408

Sequence Viewer

Length: 474 bp
ATGCAAGAGAAGTTGGCAGAAATTGTTGCAGTTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAATGATGGGACCTAAGAAACGTCACAAAGTTTGCGGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACACTGTGCTCACTTGCAGTCACAATTTATGGAGTTAGAATCCAAGTACCAACAACAAGAGCAAGCTCAGCAACCATCCTTCCAAATGCCTTCTTATCCTCCTCAAATGTACTGGCCTCAACTGCAGATCTATCCTCAAATGCCTTATCAGCTGCAAGATGCTTATCCTACCACTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCCAGAAACTGATTTGTTGAACCAGCTTAGAGCTTCATTGAATCAACGCTCTCGTAGATCTGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

158

Amino Acids

17.99

Weight (kDa)

6.19

Isoelectric Point (pI)

72.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AciI CCGC 1 cut(s) 111
AfaI GTAC 2 cut(s) 242, 305
AfiI CCNNNNNNNGG 1 cut(s) 368
AgsI TTSAA 4 cut(s) 35, 155, 424, 445
AluBI AGCT 5 cut(s) 168, 260, 346, 430, 437
AluI AGCT 5 cut(s) 168, 260, 346, 430, 437
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 86
BaeI ACNNNNGTAYC 2 cut(s) 387, 420
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 333
BccI CCATC 3 cut(s) 76, 155, 277
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 2 cut(s) 48, 317
BglII AGATCT 2 cut(s) 321, 461
BisI GCNGC 1 cut(s) 347
BlpI GCTNAGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 87, 144
BmsI GCATC 2 cut(s) 45, 343
BpiI GAAGAC 1 cut(s) 199
Bpu1102I GCTNAGC 1 cut(s) 261
BsaBI GATNNNNATC 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse1I ACTGG 3 cut(s) 311, 373, 382
Bse3DI GCAATG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 357
BseGI GGATG 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 275, 456
BseNI ACTGG 3 cut(s) 311, 373, 382
BseRI GAGGAG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 333
BshFI GGCC 1 cut(s) 310
BshNI GGYRCC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 205
BslFI GGGAC 2 cut(s) 99, 389
BslI CCNNNNNNNGG 1 cut(s) 368
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 99, 389
BsnI GGCC 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 3 cut(s) 182, 321, 461
Bsp1720I GCTNAGC 1 cut(s) 261
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 2 cut(s) 274, 457
BspLI GGNNCC 2 cut(s) 87, 144
BspMAI CTGCAG 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 3 cut(s) 311, 373, 382
BssMI GATC 3 cut(s) 182, 321, 461
Bst4CI ACNGT 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 4 cut(s) 90, 261, 431, 465
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 3 cut(s) 185, 324, 464
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 3 cut(s) 182, 321, 461
BstMWI GCNNNNNNNGC 4 cut(s) 74, 262, 316, 343
BstSFI CTRYAG 2 cut(s) 48, 317
BstV1I GCAGC 1 cut(s) 333
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 321, 461
BstYI RGATCY 2 cut(s) 321, 461
BsuRI GGCC 1 cut(s) 310
BtsCI GGATG 1 cut(s) 269
BtsIMutI CAGTG 2 cut(s) 196, 366
Cac8I GCNNGC 1 cut(s) 258
CaiI CAGNNNCTG 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 2 cut(s) 241, 304
CviAII CATG 1 cut(s) 188
CviJI RGCY 6 cut(s) 168, 260, 310, 346, 430, 437
CviKI_1 RGCY 6 cut(s) 168, 260, 310, 346, 430, 437
CviQI GTAC 2 cut(s) 241, 304
DdeI CTNAG 4 cut(s) 90, 261, 431, 465
DpnI GATC 3 cut(s) 184, 323, 463
DpnII GATC 3 cut(s) 182, 321, 461
Eco47I GGWCC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 86
FaeI CATG 1 cut(s) 191
FaiI YATR 7 cut(s) 70, 72, 117, 140, 189, 224, 389
FaqI GGGAC 2 cut(s) 99, 389
FatI CATG 1 cut(s) 187
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 1 cut(s) 122
GluI GCNGC 1 cut(s) 347
HaeIII GGCC 1 cut(s) 310
Hin1II CATG 1 cut(s) 191
HinfI GANTC 2 cut(s) 233, 445
Hpy188I TCNGA 1 cut(s) 466
HpyAV CCTTC 3 cut(s) 29, 283, 294
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 6 cut(s) 4, 29, 77, 211, 319, 349
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 262, 316, 343
HpyF3I CTNAG 4 cut(s) 90, 261, 431, 465
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 1 cut(s) 191
Kzo9I GATC 3 cut(s) 182, 321, 461
LpnPI CCDG 6 cut(s) 147, 292, 354, 363, 420, 440
Lsp1109I GCAGC 1 cut(s) 333
LweI GCATC 2 cut(s) 45, 343
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 2 cut(s) 98, 213
MalI GATC 3 cut(s) 184, 323, 463
MboI GATC 3 cut(s) 182, 321, 461
MboII GAAGA 2 cut(s) 143, 204
MflI RGATCY 2 cut(s) 321, 461
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 3 cut(s) 21, 156, 218
MnlI CCTC 4 cut(s) 303, 306, 321, 339
MspA1I CMGCKG 1 cut(s) 346
MwoI GCNNNNNNNGC 4 cut(s) 74, 262, 316, 343
NdeI CATATG 1 cut(s) 70
NdeII GATC 3 cut(s) 182, 321, 461
NlaIII CATG 1 cut(s) 191
NlaIV GGNNCC 2 cut(s) 87, 144
NmuCI GTSAC 2 cut(s) 98, 213
PfeI GAWTC 2 cut(s) 233, 445
PkrI GCNGC 1 cut(s) 348
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 87, 144
PspPI GGNCC 1 cut(s) 86
PspPPI RGGWCCY 1 cut(s) 86
PstI CTGCAG 1 cut(s) 321
PstNI CAGNNNCTG 1 cut(s) 413
PsuI RGATCY 2 cut(s) 321, 461
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 2 cut(s) 242, 305
RsaNI GTAC 2 cut(s) 241, 304
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 3 cut(s) 182, 321, 461
Sau96I GGNCC 1 cut(s) 86
SduI GDGCHC 1 cut(s) 205
SfaNI GCATC 2 cut(s) 45, 343
SfcI CTRYAG 2 cut(s) 48, 317
SinI GGWCC 1 cut(s) 86
Sse9I AATT 3 cut(s) 21, 156, 218
SsiI CCGC 1 cut(s) 111
SspMI CTAG 1 cut(s) 122
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 100
TasI AATT 3 cut(s) 21, 156, 218
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 2 cut(s) 233, 445
TscAI CASTG 2 cut(s) 203, 373
TseFI GTSAC 2 cut(s) 98, 213
TseI GCWGC 1 cut(s) 346
Tsp45I GTSAC 2 cut(s) 98, 213
TspDTI ATGAA 1 cut(s) 429
TspRI CASTG 2 cut(s) 203, 373
VpaK11BI GGWCC 1 cut(s) 86
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.