Rw3G020320

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001007
Physical Location & Seq
Forward (+)
23760715 .. 23772606
11892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020320.1

Sequence Viewer

Length: 837 bp
ATGCCTTCAAAGGATAGTTTTGGAAGACTGCATGAAAGAGGGAAGGAAGTCCCCAAGGCAACAAAACTTCTGACGAAACTTTTTCCTAATAAAGTAACCATTCATATGCCACAGGATGAGGGACTTCTTGTCCCATGGAAACAGCAATTGGATCGTGATGCCGAAACCCTCAAAATGAAGGGAAATTTGAACCACTTGCGCACTGTTCTGGGTCGGTGTGGGATGGAATGTGAAGGACTTGATACGCTAAGCATCAAGGACCAAACACTTACAAATGAAAGCAAAACTACCAAAGTACGTGGTAAAGGAACATGTACTTGGATGGAAGATAATAAAAAAGAATCCCTCGAGTTCAATTCTATGGGTGTTAGTGTAGGTTCTAATGATGGAAAATTTGGCCGGTACTTGGGTGGGTTAGCTCGAGATTCTAATGTACTTCCGCTCGTCACTAAACCTTGGCCTAAAGTCTCAAGTACTATTAAAGATCCCTTATGGGACCAAATATATGCAACTATTGAATGGAAACCTGAAGATCTTCCTCGTCTACCTCTCATAAAGCATAATATAATGGAAAGAGTTGCTAAATATTGGAGAAGCTACAAGAACAGACTTAAGAAAGCTCATTATGATCCCAAAATAGGCACACCAGGACGTTGGGTGTGTGGGAATAAAGATGTCAACGCAGCTGAATGGCGCGAAATGGTGAAATATTGGGATACTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTGGCACCAAGACTTATGCACGCAGTCGAGCAGAATATGTAAGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA FHA

Protein Analysis

278

Amino Acids

31.94

Weight (kDa)

9.62

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 229 - 275 5.3e-10 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 791
AccBSI CCGCTC 1 cut(s) 442
AccI GTMKAC 1 cut(s) 544
AccII CGCG 1 cut(s) 696
AciI CCGC 1 cut(s) 440
AclWI GGATC 3 cut(s) 159, 479, 623
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 3 cut(s) 184, 392, 748
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 5 cut(s) 297, 316, 404, 435, 475
AfiI CCNNNNNNNGG 2 cut(s) 406, 638
AflII CTTAAG 1 cut(s) 611
AflIII ACRYGT 1 cut(s) 311
AgsI TTSAA 4 cut(s) 9, 190, 355, 518
AhdI GACNNNNNGTC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 646
AjuI GAANNNNNNNTTGG 4 cut(s) 131, 163, 301, 333
AluBI AGCT 4 cut(s) 419, 597, 620, 686
AluI AGCT 4 cut(s) 419, 597, 620, 686
Alw26I GTCTC 1 cut(s) 472
AlwI GGATC 3 cut(s) 159, 479, 623
Ama87I CYCGRG 2 cut(s) 347, 420
AoxI GGCC 2 cut(s) 397, 458
ApeKI GCWGC 1 cut(s) 683
ApoI RAATTY 3 cut(s) 184, 392, 748
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 2 cut(s) 201, 696
AspS9I GGNCC 2 cut(s) 259, 496
AsuHPI GGTGA 1 cut(s) 715
AvaI CYCGRG 2 cut(s) 347, 420
AvaII GGWCC 2 cut(s) 259, 496
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BanI GGYRCC 1 cut(s) 791
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 695
BccI CCATC 3 cut(s) 217, 316, 380
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 648
BciVI GTATCC 1 cut(s) 709
BcoDI GTCTC 1 cut(s) 472
BfrI CTTAAG 1 cut(s) 611
BfuI GTATCC 1 cut(s) 709
BglII AGATCT 1 cut(s) 532
BisI GCNGC 1 cut(s) 684
BlpI GCTNAGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 685
BmcAI AGTACT 1 cut(s) 475
Bme1390I CCNGG 1 cut(s) 648
Bme18I GGWCC 2 cut(s) 259, 496
BmeRI GACNNNNNGTC 1 cut(s) 128
BmeT110I CYCGRG 2 cut(s) 347, 420
BmgT120I GGNCC 2 cut(s) 259, 496
BmiI GGNNCC 2 cut(s) 497, 793
BmrFI CCNGG 1 cut(s) 648
BmsI GCATC 2 cut(s) 148, 261
BpiI GAAGAC 1 cut(s) 31
Bpu1102I GCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 299
BsaJI CCNNGG 3 cut(s) 54, 134, 455
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 638
Bse118I RCCGGY 1 cut(s) 399
BseBI CCWGG 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 54, 134, 455
BseGI GGATG 3 cut(s) 121, 228, 327
BseLI CCNNNNNNNGG 2 cut(s) 406, 638
BseMII CTCAG 1 cut(s) 732
BseXI GCAGC 1 cut(s) 695
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 2 cut(s) 399, 460
BshNI GGYRCC 1 cut(s) 791
BsiHKCI CYCGRG 2 cut(s) 347, 420
BsiSI CCGG 1 cut(s) 400
BslFI GGGAC 4 cut(s) 35, 116, 135, 509
BslI CCNNNNNNNGG 2 cut(s) 406, 638
BsmAI GTCTC 1 cut(s) 472
BsmFI GGGAC 4 cut(s) 35, 116, 135, 509
BsnI GGCC 2 cut(s) 399, 460
BsoBI CYCGRG 2 cut(s) 347, 420
Bsp143I GATC 4 cut(s) 151, 484, 532, 628
Bsp1720I GCTNAGC 1 cut(s) 248
Bsp19I CCATGG 1 cut(s) 134
BspACI CCGC 1 cut(s) 440
BspANI GGCC 2 cut(s) 399, 460
BspCNI CTCAG 1 cut(s) 733
BspFNI CGCG 1 cut(s) 696
BspLI GGNNCC 2 cut(s) 497, 793
BspPI GGATC 3 cut(s) 159, 479, 623
BspT107I GGYRCC 1 cut(s) 791
BspTI CTTAAG 1 cut(s) 611
BsrBI CCGCTC 1 cut(s) 442
BsrFI RCCGGY 1 cut(s) 399
BssAI RCCGGY 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 54, 134, 455
BssMI GATC 4 cut(s) 151, 484, 532, 628
BssT1I CCWWGG 3 cut(s) 54, 134, 455
Bst2UI CCWGG 1 cut(s) 648
Bst4CI ACNGT 2 cut(s) 205, 733
BstAFI CTTAAG 1 cut(s) 611
BstBAI YACGTR 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 808
BstDEI CTNAG 2 cut(s) 248, 741
BstDSI CCRYGG 1 cut(s) 134
BstF5I GGATG 3 cut(s) 121, 228, 327
BstFNI CGCG 1 cut(s) 696
BstHHI GCGC 2 cut(s) 201, 696
BstKTI GATC 4 cut(s) 154, 487, 535, 631
BstMAI GTCTC 1 cut(s) 472
BstMBI GATC 4 cut(s) 151, 484, 532, 628
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 1 cut(s) 646
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 1 cut(s) 695
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 484, 532
BstXI CCANNNNNNTGG 1 cut(s) 654
BstYI RGATCY 2 cut(s) 484, 532
BsuI GTATCC 1 cut(s) 709
BsuRI GGCC 2 cut(s) 399, 460
BtgI CCRYGG 1 cut(s) 134
BtsCI GGATG 3 cut(s) 121, 228, 327
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 808
CfoI GCGC 2 cut(s) 201, 696
Cfr10I RCCGGY 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 259, 496
Csp6I GTAC 5 cut(s) 296, 315, 403, 434, 474
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviAII CATG 3 cut(s) 32, 135, 312
CviJI RGCY 6 cut(s) 399, 419, 460, 597, 620, 686
CviKI_1 RGCY 6 cut(s) 399, 419, 460, 597, 620, 686
CviQI GTAC 5 cut(s) 296, 315, 403, 434, 474
DdeI CTNAG 2 cut(s) 248, 741
DpnI GATC 4 cut(s) 153, 486, 534, 630
DpnII GATC 4 cut(s) 151, 484, 532, 628
DriI GACNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 397
Eam1105I GACNNNNNGTC 1 cut(s) 128
Eco130I CCWWGG 3 cut(s) 54, 134, 455
Eco47I GGWCC 2 cut(s) 259, 496
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 2 cut(s) 347, 420
EcoRI GAATTC 1 cut(s) 748
EcoRII CCWGG 1 cut(s) 646
EcoT14I CCWWGG 3 cut(s) 54, 134, 455
ErhI CCWWGG 3 cut(s) 54, 134, 455
FaeI CATG 3 cut(s) 35, 138, 315
FaqI GGGAC 4 cut(s) 35, 116, 135, 509
FatI CATG 3 cut(s) 31, 134, 311
FauNDI CATATG 1 cut(s) 105
FblI GTMKAC 1 cut(s) 544
Fnu4HI GCNGC 1 cut(s) 684
FokI GGATG 3 cut(s) 128, 235, 334
Fsp4HI GCNGC 1 cut(s) 684
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 2 cut(s) 200, 695
GluI GCNGC 1 cut(s) 684
HaeIII GGCC 2 cut(s) 399, 460
HapII CCGG 1 cut(s) 400
HhaI GCGC 2 cut(s) 201, 696
Hin1II CATG 3 cut(s) 35, 138, 315
Hin6I GCGC 2 cut(s) 199, 694
HinP1I GCGC 2 cut(s) 199, 694
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HinfI GANTC 2 cut(s) 341, 425
HpaII CCGG 1 cut(s) 400
HphI GGTGA 1 cut(s) 715
Hpy166II GTNNAC 2 cut(s) 545, 679
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 2 cut(s) 155, 422
Hpy8I GTNNAC 2 cut(s) 545, 679
HpyAV CCTTC 4 cut(s) 15, 37, 172, 227
HpyCH4III ACNGT 2 cut(s) 205, 733
HpyCH4IV ACGT 2 cut(s) 298, 652
HpyCH4V TGCA 4 cut(s) 31, 509, 755, 806
HpyF3I CTNAG 2 cut(s) 248, 741
HpySE526I ACGT 2 cut(s) 298, 652
Hsp92II CATG 3 cut(s) 35, 138, 315
HspAI GCGC 2 cut(s) 199, 694
Kzo9I GATC 4 cut(s) 151, 484, 532, 628
LpnPI CCDG 7 cut(s) 98, 194, 413, 540, 633, 660, 774
Lsp1109I GCAGC 1 cut(s) 695
LweI GCATC 2 cut(s) 148, 261
MaeII ACGT 2 cut(s) 298, 652
MaeIII GTNAC 2 cut(s) 94, 445
MalI GATC 4 cut(s) 153, 486, 534, 630
MbiI CCGCTC 1 cut(s) 442
MboI GATC 4 cut(s) 151, 484, 532, 628
MboII GAAGA 5 cut(s) 36, 338, 527, 542, 757
MfeI CAATTG 1 cut(s) 146
MflI RGATCY 2 cut(s) 484, 532
MluCI AATT 6 cut(s) 146, 184, 355, 392, 735, 748
MnlI CCTC 7 cut(s) 32, 112, 179, 356, 549, 558, 796
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 2 cut(s) 480, 612
MslI CAYNNNNRTG 1 cut(s) 104
MspA1I CMGCKG 1 cut(s) 686
MspCI CTTAAG 1 cut(s) 611
MspI CCGG 1 cut(s) 400
MspR9I CCNGG 1 cut(s) 648
MunI CAATTG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 648
MvnI CGCG 1 cut(s) 696
NcoI CCATGG 1 cut(s) 134
NdeI CATATG 1 cut(s) 105
NdeII GATC 4 cut(s) 151, 484, 532, 628
NlaIII CATG 3 cut(s) 35, 138, 315
NlaIV GGNNCC 2 cut(s) 497, 793
NmuCI GTSAC 1 cut(s) 445
NsbI TGCGCA 1 cut(s) 200
NspI RCATGY 1 cut(s) 315
PaeR7I CTCGAG 2 cut(s) 347, 420
PciI ACATGT 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 341, 425
PkrI GCNGC 1 cut(s) 685
Ppu21I YACGTR 1 cut(s) 299
PscI ACATGT 1 cut(s) 311
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 2 cut(s) 497, 793
PspPI GGNCC 2 cut(s) 259, 496
PspXI VCTCGAGB 1 cut(s) 347
PsuI RGATCY 2 cut(s) 484, 532
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 5 cut(s) 297, 316, 404, 435, 475
RsaNI GTAC 5 cut(s) 296, 315, 403, 434, 474
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 2 cut(s) 480, 612
SatI GCNGC 1 cut(s) 684
Sau3AI GATC 4 cut(s) 151, 484, 532, 628
Sau96I GGNCC 2 cut(s) 259, 496
ScaI AGTACT 1 cut(s) 475
ScrFI CCNGG 1 cut(s) 648
SfaNI GCATC 2 cut(s) 148, 261
Sfr274I CTCGAG 2 cut(s) 347, 420
SinI GGWCC 2 cut(s) 259, 496
SlaI CTCGAG 2 cut(s) 347, 420
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 4 cut(s) 347, 420, 469, 611
SmoI CTYRAG 4 cut(s) 347, 420, 469, 611
Sse9I AATT 6 cut(s) 146, 184, 355, 392, 735, 748
SsiI CCGC 1 cut(s) 440
SspI AATATT 2 cut(s) 587, 710
StyD4I CCNGG 1 cut(s) 646
StyI CCWWGG 3 cut(s) 54, 134, 455
TaaI ACNGT 2 cut(s) 205, 733
TaiI ACGT 2 cut(s) 301, 655
TaqI TCGA 4 cut(s) 348, 421, 760, 814
TasI AATT 6 cut(s) 146, 184, 355, 392, 735, 748
TatI WGTACW 3 cut(s) 314, 433, 473
TfiI GAWTC 2 cut(s) 341, 425
Tru1I TTAA 2 cut(s) 480, 612
Tru9I TTAA 2 cut(s) 480, 612
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 4 cut(s) 48, 92, 191, 291
TspRI CASTG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 611
VpaK11BI GGWCC 2 cut(s) 259, 496
XapI RAATTY 3 cut(s) 184, 392, 748
XceI RCATGY 1 cut(s) 315
XhoI CTCGAG 2 cut(s) 347, 420
XmiI GTMKAC 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 534
ZrmI AGTACT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.