Rh3DG326400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001007
Physical Location & Seq
Reverse (-)
35827143 .. 35827502
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG326400.1

Sequence Viewer

Length: 360 bp
ATGTGCGAGAAGACATTATGCTCACTTGCAGTCAGAATTTATAGAGTTAGAGTCCAAGTACCAACAACAATAATGGCAAGCCCAGGTGTAGCAAGTTCAAACTCAGGAACAACTCTTGCAAACCCAACGAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTTACGACAATCTTCTTAGCCTTTGCAGCAACCATCCTTTCAGATGCCTTCTTATCCACCTCAAATGTACTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCCCTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.74

Weight (kDa)

9.3

Isoelectric Point (pI)

17.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 261
AcsI RAATTY 1 cut(s) 36
AfaI GTAC 2 cut(s) 60, 249
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 1 cut(s) 99
AjnI CCWGG 2 cut(s) 82, 311
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 36
BaeI ACNNNNGTAYC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 17
BbvI GCAGC 1 cut(s) 218
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 2 cut(s) 84, 313
BglII AGATCT 1 cut(s) 265
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 84, 313
BmrFI CCNGG 2 cut(s) 84, 313
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 82, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse1I ACTGG 2 cut(s) 255, 326
Bse3DI GCAATG 1 cut(s) 145
BseBI CCWGG 2 cut(s) 84, 313
BseDI CCNNGG 2 cut(s) 82, 311
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 2 cut(s) 255, 326
BseXI GCAGC 1 cut(s) 218
BseYI CCCAGC 1 cut(s) 163
BshFI GGCC 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 312
BsnI GGCC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 1 cut(s) 261
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 2 cut(s) 255, 326
BssECI CCNNGG 2 cut(s) 82, 311
BssMI GATC 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 84, 313
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 103, 196
BstF5I GGATG 1 cut(s) 213
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 3 cut(s) 206, 260, 287
BstNI CCWGG 2 cut(s) 84, 313
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 2 cut(s) 82, 311
BstV1I GCAGC 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 59, 248
CviAII CATG 1 cut(s) 297
CviJI RGCY 4 cut(s) 81, 200, 254, 290
CviKI_1 RGCY 4 cut(s) 81, 200, 254, 290
CviQI GTAC 2 cut(s) 59, 248
DdeI CTNAG 2 cut(s) 103, 196
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 82, 311
FaeI CATG 1 cut(s) 300
FaiI YATR 4 cut(s) 19, 42, 298, 333
FatI CATG 1 cut(s) 296
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 167
HaeIII GGCC 1 cut(s) 254
Hin1II CATG 1 cut(s) 300
HinfI GANTC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 35, 223
Hpy188III TCNNGA 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 238
HpyCH4V TGCA 3 cut(s) 29, 119, 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 260, 287
HpyF3I CTNAG 2 cut(s) 103, 196
Hsp92II CATG 1 cut(s) 300
Kzo9I GATC 1 cut(s) 265
LpnPI CCDG 8 cut(s) 69, 90, 96, 177, 236, 298, 307, 325
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 214
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 2 cut(s) 22, 184
MflI RGATCY 1 cut(s) 265
MluCI AATT 2 cut(s) 36, 132
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 4 cut(s) 250, 265, 283, 301
MseI TTAA 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 84, 313
MvaI CCWGG 2 cut(s) 84, 313
MwoI GCNNNNNNNGC 3 cut(s) 206, 260, 287
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 300
NspI RCATGY 1 cut(s) 300
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp6I CCWGG 2 cut(s) 82, 311
PspFI CCCAGC 1 cut(s) 163
PspGI CCWGG 2 cut(s) 82, 311
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 2 cut(s) 60, 249
RsaNI GTAC 2 cut(s) 59, 248
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 265
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 2 cut(s) 84, 313
SetI ASST 3 cut(s) 88, 182, 242
SfaNI GCATC 1 cut(s) 214
Sse9I AATT 2 cut(s) 36, 132
SsiI CCGC 1 cut(s) 261
StyD4I CCNGG 2 cut(s) 82, 311
TasI AATT 2 cut(s) 36, 132
TatI WGTACW 1 cut(s) 247
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 1 cut(s) 206
XapI RAATTY 1 cut(s) 36
XceI RCATGY 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.