Rorug02G0403100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001007
Physical Location & Seq
Reverse (-)
51494971 .. 51495870
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0403100.1

Sequence Viewer

Length: 900 bp
ATGGCATTCAAGTCTATATTTTCAGTAGCATTATTGCTATCTTTAGTGACACTGCTTCTGGCTGTTGGGTCAAATGCAGGTGGAATTGCTATTTATTGGGGCCAAAATGGAAATGAAGGCACATTAGCACAAACATGTTCTTCAGGGAATTACCAATTTGTGAACATAGCTTTCCTTTCGTCATTTGGTAATGGCCAGACCCCTACCATAAACCTTGCTGGTCACTGTGATCCATCCACCAACGAATGCACCAAGTTGAGCCCAGATATCAAGTCATGCCAAGCCGAAGGCATCAAGGTCATACTCTCCATAGGAGGAGGTGCTGGGAGCTATTCTCTAGCTTCATCCGATGATGCCCAACAAGTTGCTATGTACTTGTGGAACAACTTCTTGGGAGGACAGTCGTCATCCAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTTGATATTGAAGGAGGAACTGATCAACATTGGGATGACCTCGCTAGGTACCTTTCTGGTTACAGCAAGAAGGGCAAGAAAGTTTACTTGACTGCTGCTCCACAGTGTCCCTTTCCTGATGCTTATGTTGGAAATGCACTAAACACAGGCCTCTTCGATTTTGTTTGGGTACAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGTGATGTTTCAAATCTCGAAGATGCTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCTCAAGCTGCTGGCAGTGGATTTATTCCTCCAGCTGATCTCAACTCACAAGTCCTTCCGGCTATCAAGAATTCGGCGAAATATGGAGGTGTCATGCTTTGGTCCAAGTATTATGATGATCTAGATGGATACAGCTCTTCCATCAAGAATGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

299

Amino Acids

31.79

Weight (kDa)

4.64

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 29 - 247 3.6e-23 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 68
Acc36I ACCTGC 1 cut(s) 68
Acc65I GGTACC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 495
AclWI GGATC 1 cut(s) 224
AcoI YGGCCR 1 cut(s) 193
AcsI RAATTY 1 cut(s) 811
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 4 cut(s) 374, 497, 618, 647
AflIII ACRYGT 1 cut(s) 134
AgsI TTSAA 3 cut(s) 10, 458, 666
AjnI CCWGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 6 cut(s) 170, 330, 341, 749, 776, 876
AluI AGCT 6 cut(s) 170, 330, 341, 749, 776, 876
AlwI GGATC 1 cut(s) 224
AoxI GGCC 4 cut(s) 100, 193, 413, 595
ApeKI GCWGC 3 cut(s) 542, 737, 749
ApoI RAATTY 1 cut(s) 811
Asp700I GAANNNNTTC 1 cut(s) 386
Asp718I GGTACC 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 100, 843
AsuHPI GGTGA 1 cut(s) 668
AvaII GGWCC 1 cut(s) 843
BalI TGGCCA 1 cut(s) 195
BanI GGYRCC 1 cut(s) 495
BanII GRGCYC 1 cut(s) 263
BbvI GCAGC 3 cut(s) 529, 724, 736
BccI CCATC 4 cut(s) 241, 431, 860, 890
BceAI ACGGC 1 cut(s) 400
BciT130I CCWGG 1 cut(s) 412
BciVI GTATCC 1 cut(s) 863
BclI TGATCA 1 cut(s) 469
BfaI CTAG 4 cut(s) 338, 492, 863, 898
BfuAI ACCTGC 1 cut(s) 68
BfuI GTATCC 1 cut(s) 863
BisI GCNGC 3 cut(s) 543, 738, 750
BlsI GCNGC 3 cut(s) 544, 739, 751
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 1 cut(s) 843
BmgT120I GGNCC 2 cut(s) 100, 843
BmiI GGNNCC 2 cut(s) 101, 497
BmrFI CCNGG 1 cut(s) 412
BmsI GCATC 5 cut(s) 300, 343, 415, 556, 667
BoxI GACNNNNGTC 1 cut(s) 403
BplI GAGNNNNNCTC 2 cut(s) 319, 351
BpmI CTGGAG 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 729
BsaXI ACNNNNNCTCC 4 cut(s) 414, 444, 529, 559
Bse1I ACTGG 1 cut(s) 643
Bse3DI GCAATG 1 cut(s) 695
BseBI CCWGG 1 cut(s) 412
BseGI GGATG 5 cut(s) 233, 344, 407, 442, 487
BseMI GCAATG 1 cut(s) 695
BseNI ACTGG 1 cut(s) 643
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 3 cut(s) 529, 724, 736
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 2 cut(s) 693, 723
BshFI GGCC 4 cut(s) 102, 195, 415, 597
BshNI GGYRCC 1 cut(s) 495
BsiSI CCGG 1 cut(s) 800
BslFI GGGAC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 540
BsmI GAATGC 2 cut(s) 5, 251
BsnI GGCC 4 cut(s) 102, 195, 415, 597
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 4 cut(s) 229, 469, 778, 859
BspANI GGCC 4 cut(s) 102, 195, 415, 597
BspLI GGNNCC 2 cut(s) 101, 497
BspMI ACCTGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 224
BspQI GCTCTTC 1 cut(s) 883
BspT107I GGYRCC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 695
BsrI ACTGG 1 cut(s) 643
BssMI GATC 4 cut(s) 229, 469, 778, 859
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 3 cut(s) 227, 402, 552
Bst6I CTCTTC 2 cut(s) 605, 883
BstC8I GCNNGC 1 cut(s) 754
BstDEI CTNAG 1 cut(s) 724
BstF5I GGATG 5 cut(s) 233, 344, 407, 442, 487
BstKTI GATC 4 cut(s) 232, 472, 781, 862
BstMBI GATC 4 cut(s) 229, 469, 778, 859
BstMWI GCNNNNNNNGC 3 cut(s) 519, 707, 746
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 1 cut(s) 138
BstPAI GACNNNNGTC 1 cut(s) 403
BstSCI CCNGG 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 529, 724, 736
BstXI CCANNNNNNTGG 1 cut(s) 418
BsuI GTATCC 1 cut(s) 863
BsuRI GGCC 4 cut(s) 102, 195, 415, 597
BtsCI GGATG 5 cut(s) 233, 344, 407, 442, 487
BtsI GCAGTG 2 cut(s) 50, 763
BtsIMutI CAGTG 4 cut(s) 50, 223, 557, 763
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 754
Cfr13I GGNCC 2 cut(s) 100, 843
Csp6I GTAC 4 cut(s) 373, 496, 617, 646
CviAII CATG 3 cut(s) 135, 276, 835
CviQI GTAC 4 cut(s) 373, 496, 617, 646
DdeI CTNAG 1 cut(s) 724
DpnI GATC 4 cut(s) 231, 471, 780, 861
DpnII GATC 4 cut(s) 229, 469, 778, 859
EaeI YGGCCR 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 605, 883
EarI CTCTTC 2 cut(s) 605, 883
Eco147I AGGCCT 1 cut(s) 597
Eco24I GRGCYC 1 cut(s) 263
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 843
Eco57I CTGAAG 1 cut(s) 126
EcoRI GAATTC 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 410
EcoRV GATATC 1 cut(s) 268
EcoT38I GRGCYC 1 cut(s) 263
FaeI CATG 3 cut(s) 138, 279, 838
FalI AAGNNNNNCTT 2 cut(s) 707, 739
FaqI GGGAC 1 cut(s) 540
FatI CATG 3 cut(s) 134, 275, 834
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 3 cut(s) 543, 738, 750
FokI GGATG 5 cut(s) 220, 331, 394, 449, 494
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 543, 738, 750
FspBI CTAG 4 cut(s) 338, 492, 863, 898
GluI GCNGC 3 cut(s) 543, 738, 750
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 4 cut(s) 102, 195, 415, 597
HapII CCGG 1 cut(s) 800
Hin1II CATG 3 cut(s) 138, 279, 838
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HpaII CCGG 1 cut(s) 800
HphI GGTGA 1 cut(s) 668
Hpy166II GTNNAC 4 cut(s) 163, 445, 532, 648
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 5 cut(s) 563, 671, 808, 863, 886
Hpy8I GTNNAC 4 cut(s) 163, 445, 532, 648
HpyAV CCTTC 5 cut(s) 110, 281, 452, 511, 806
HpyCH4III ACNGT 3 cut(s) 227, 402, 552
HpyCH4V TGCA 5 cut(s) 77, 249, 584, 710, 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 519, 707, 746
HpyF3I CTNAG 1 cut(s) 724
Hsp92II CATG 3 cut(s) 138, 279, 838
KpnI GGTACC 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 4 cut(s) 229, 469, 778, 859
LguI GCTCTTC 1 cut(s) 883
LmnI GCTCC 2 cut(s) 327, 550
Lsp1109I GCAGC 3 cut(s) 529, 724, 736
LweI GCATC 5 cut(s) 300, 343, 415, 556, 667
MaeI CTAG 4 cut(s) 338, 492, 863, 898
MaeIII GTNAC 3 cut(s) 46, 221, 506
MalI GATC 4 cut(s) 231, 471, 780, 861
MboI GATC 4 cut(s) 229, 469, 778, 859
MboII GAAGA 4 cut(s) 132, 592, 686, 870
MhlI GDGCHC 1 cut(s) 263
MlsI TGGCCA 1 cut(s) 195
MluCI AATT 5 cut(s) 84, 148, 155, 620, 811
MluNI TGGCCA 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 556
Mox20I TGGCCA 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 386
MscI TGGCCA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 133, 480
Msp20I TGGCCA 1 cut(s) 195
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 1 cut(s) 800
MspR9I CCNGG 1 cut(s) 412
Mva1269I GAATGC 2 cut(s) 5, 251
MvaI CCWGG 1 cut(s) 412
MwoI GCNNNNNNNGC 3 cut(s) 519, 707, 746
NdeII GATC 4 cut(s) 229, 469, 778, 859
NlaIII CATG 3 cut(s) 138, 279, 838
NlaIV GGNNCC 2 cut(s) 101, 497
NmuCI GTSAC 2 cut(s) 46, 221
NspI RCATGY 1 cut(s) 138
PaqCI CACCTGC 1 cut(s) 68
PceI AGGCCT 1 cut(s) 597
PciI ACATGT 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 883
PctI GAATGC 2 cut(s) 5, 251
PdmI GAANNNNTTC 1 cut(s) 386
PkrI GCNGC 3 cut(s) 544, 739, 751
PscI ACATGT 1 cut(s) 134
PshAI GACNNNNGTC 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 2 cut(s) 101, 497
PspPI GGNCC 2 cut(s) 100, 843
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 4 cut(s) 374, 497, 618, 647
RsaNI GTAC 4 cut(s) 373, 496, 617, 646
RseI CAYNNNNRTG 2 cut(s) 133, 480
SapI GCTCTTC 1 cut(s) 883
SatI GCNGC 3 cut(s) 543, 738, 750
Sau3AI GATC 4 cut(s) 229, 469, 778, 859
Sau96I GGNCC 2 cut(s) 100, 843
ScrFI CCNGG 1 cut(s) 412
SduI GDGCHC 1 cut(s) 263
SfaNI GCATC 5 cut(s) 300, 343, 415, 556, 667
SinI GGWCC 1 cut(s) 843
SmiMI CAYNNNNRTG 2 cut(s) 133, 480
SmlI CTYRAG 1 cut(s) 744
SmoI CTYRAG 1 cut(s) 744
Sse9I AATT 5 cut(s) 84, 148, 155, 620, 811
SseBI AGGCCT 1 cut(s) 597
SspMI CTAG 4 cut(s) 338, 492, 863, 898
StuI AGGCCT 1 cut(s) 597
StyD4I CCNGG 1 cut(s) 410
TaaI ACNGT 3 cut(s) 227, 402, 552
TaqI TCGA 2 cut(s) 603, 672
TasI AATT 5 cut(s) 84, 148, 155, 620, 811
TatI WGTACW 2 cut(s) 372, 645
TscAI CASTG 4 cut(s) 57, 230, 557, 763
TseFI GTSAC 2 cut(s) 46, 221
TseI GCWGC 3 cut(s) 542, 737, 749
Tsp45I GTSAC 2 cut(s) 46, 221
TspDTI ATGAA 2 cut(s) 129, 333
TspRI CASTG 4 cut(s) 57, 230, 557, 763
VpaK11BI GGWCC 1 cut(s) 843
XapI RAATTY 1 cut(s) 811
XbaI TCTAGA 1 cut(s) 862
XceI RCATGY 1 cut(s) 138
XcmI CCANNNNNNNNNTGG 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 4 cut(s) 338, 492, 863, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.