RLG00000030687

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001007
Physical Location & Seq
Reverse (-)
65930801 .. 65931691
891 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030687

Sequence Viewer

Length: 435 bp
ATGGGACCTGAGAAACGTCACAGTGTTCGCGGTTATGGACTAGTCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAACAAGAGCAAGCCCAGGTGCAGCAAGTTCAAACTCAAGAACAACTCTTGCAAACCCAACGAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCACAACAATCTTCTCAGCCGTTGCAGCAACCATCCTTCCAGATGCCTTCTTATCCTCCTCAAATGTATTGGCCTCAACCGCAGATCTATCCTCAAATGCCTTATCAGCCTTAACATGCTTATCCTACCACTGGACTAATTGGATTGCTTATGGGCCCGGAGATACAAGTGTCCAAGAAACTGATTTGTTGAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCGTGGATCTGAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

15.21

Weight (kDa)

8.93

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AciI CCGC 2 cut(s) 30, 273
AclWI GGATC 1 cut(s) 430
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 324
AgsI TTSAA 2 cut(s) 111, 385
AhlI ACTAGT 1 cut(s) 40
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 3 cut(s) 391, 398, 414
AluI AGCT 3 cut(s) 391, 398, 414
AlwI GGATC 1 cut(s) 430
AoxI GGCC 2 cut(s) 264, 347
ApaI GGGCCC 1 cut(s) 351
ApeKI GCWGC 2 cut(s) 101, 218
AspS9I GGNCC 3 cut(s) 5, 347, 348
AsuC2I CCSGG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 351
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BanII GRGCYC 1 cut(s) 351
BauI CACGAG 1 cut(s) 417
BbvI GCAGC 2 cut(s) 113, 230
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 96
BcnI CCSGG 1 cut(s) 351
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 277
BisI GCNGC 2 cut(s) 102, 219
BlsI GCNGC 2 cut(s) 103, 220
Bme1390I CCNGG 2 cut(s) 96, 351
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 3 cut(s) 5, 347, 348
BmiI GGNNCC 2 cut(s) 6, 349
BmrFI CCNGG 2 cut(s) 96, 351
BmsI GCATC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 324
Bse1I ACTGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 94
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 324
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 222, 417
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 2 cut(s) 113, 230
BseYI CCCAGC 1 cut(s) 175
BsgI GTGCAG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 30
BshFI GGCC 2 cut(s) 266, 349
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 266, 349
Bsp120I GGGCCC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 277, 422
BspACI CCGC 2 cut(s) 30, 273
BspANI GGCC 2 cut(s) 266, 349
BspCNI CTCAG 2 cut(s) 221, 418
BspFNI CGCG 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 6, 349
BspPI GGATC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 2 cut(s) 277, 422
BssSI CACGAG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 4 cut(s) 9, 208, 392, 426
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 2 cut(s) 280, 425
BstMBI GATC 2 cut(s) 277, 422
BstMWI GCNNNNNNNGC 3 cut(s) 218, 272, 299
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 312
BstSCI CCNGG 2 cut(s) 94, 349
BstSLI GKGCMC 1 cut(s) 351
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 113, 230
BstX2I RGATCY 2 cut(s) 277, 422
BstYI RGATCY 2 cut(s) 277, 422
BsuRI GGCC 2 cut(s) 266, 349
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 28, 322
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 5, 347, 348
Csp6I GTAC 1 cut(s) 71
CviAII CATG 1 cut(s) 309
CviJI RGCY 8 cut(s) 93, 212, 266, 302, 349, 391, 398, 414
CviKI_1 RGCY 8 cut(s) 93, 212, 266, 302, 349, 391, 398, 414
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 4 cut(s) 9, 208, 392, 426
DpnI GATC 2 cut(s) 279, 424
DpnII GATC 2 cut(s) 277, 422
Eco24I GRGCYC 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 1 cut(s) 312
FaiI YATR 4 cut(s) 36, 54, 310, 345
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 308
Fnu4HI GCNGC 2 cut(s) 102, 219
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 2 cut(s) 102, 219
FspBI CTAG 1 cut(s) 41
GluI GCNGC 2 cut(s) 102, 219
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 2 cut(s) 266, 349
HapII CCGG 1 cut(s) 351
Hin1II CATG 1 cut(s) 312
HinfI GANTC 2 cut(s) 63, 406
HpaII CCGG 1 cut(s) 351
Hpy188I TCNGA 1 cut(s) 427
Hpy188III TCNNGA 2 cut(s) 117, 233
HpyAV CCTTC 3 cut(s) 202, 239, 250
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 1 cut(s) 16
HpyCH4V TGCA 3 cut(s) 101, 131, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 272, 299
HpyF3I CTNAG 4 cut(s) 9, 208, 392, 426
HpySE526I ACGT 1 cut(s) 16
Hsp92II CATG 1 cut(s) 312
Kzo9I GATC 2 cut(s) 277, 422
LpnPI CCDG 8 cut(s) 21, 81, 108, 189, 246, 310, 364, 401
Lsp1109I GCAGC 2 cut(s) 113, 230
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 2 cut(s) 17, 43
MalI GATC 2 cut(s) 279, 424
MboI GATC 2 cut(s) 277, 422
MboII GAAGA 1 cut(s) 196
MflI RGATCY 2 cut(s) 277, 422
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 3 cut(s) 48, 144, 331
MlyI GAGTC 1 cut(s) 72
MnlI CCTC 4 cut(s) 259, 262, 277, 295
MseI TTAA 2 cut(s) 156, 305
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 96, 351
MvaI CCWGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 3 cut(s) 218, 272, 299
NciI CCSGG 1 cut(s) 351
NdeII GATC 2 cut(s) 277, 422
NlaIII CATG 1 cut(s) 312
NlaIV GGNNCC 2 cut(s) 6, 349
NmuCI GTSAC 2 cut(s) 17, 43
NspI RCATGY 1 cut(s) 312
PfeI GAWTC 1 cut(s) 406
PkrI GCNGC 2 cut(s) 103, 220
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 6, 349
PspOMI GGGCCC 1 cut(s) 347
PspPI GGNCC 3 cut(s) 5, 347, 348
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 2 cut(s) 277, 422
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SaqAI TTAA 2 cut(s) 156, 305
SatI GCNGC 2 cut(s) 102, 219
Sau3AI GATC 2 cut(s) 277, 422
Sau96I GGNCC 3 cut(s) 5, 347, 348
SchI GAGTC 1 cut(s) 72
ScrFI CCNGG 2 cut(s) 96, 351
SduI GDGCHC 1 cut(s) 351
SetI ASST 7 cut(s) 10, 19, 100, 194, 393, 400, 416
SfaNI GCATC 1 cut(s) 226
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SpeI ACTAGT 1 cut(s) 40
Sse9I AATT 3 cut(s) 48, 144, 331
SsiI CCGC 2 cut(s) 30, 273
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 2 cut(s) 94, 349
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 1 cut(s) 19
TaqI TCGA 1 cut(s) 404
TasI AATT 3 cut(s) 48, 144, 331
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 2 cut(s) 156, 305
Tru9I TTAA 2 cut(s) 156, 305
TscAI CASTG 2 cut(s) 28, 329
TseFI GTSAC 2 cut(s) 17, 43
TseI GCWGC 2 cut(s) 101, 218
Tsp45I GTSAC 2 cut(s) 17, 43
TspDTI ATGAA 1 cut(s) 390
TspRI CASTG 2 cut(s) 28, 329
VpaK11BI GGWCC 1 cut(s) 5
XceI RCATGY 1 cut(s) 312
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.