Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001007

Physical Location & Seq

Genomic Coordinates Forward (+)

29089437 .. 29093227

Gene Structure 3791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013276

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGGACATGAGAAGCTCCGGTGGGACTGCCATACGTGCGAGAAGCAATGCCGCGACGAGAAAAGTTTCGAATGTCACTGCTTGAGCGAGAGCCACCAGCTCCATCGAGGGCAACTATTGAATGGAAACCTGAAGATCTTCCTCGCAGTTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTAGCACCAAGAGTTATGCACGCAGTCGAGCAGCATATCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTATGATAAGCATACACGGAATGACAAAGAAAAAACCTGGATTGATGAAGTTGCTAAGCAGACACATTTGGCAGAAATTGTTGCAGGTGAAGGTAATGAGACTACAGAGATGCGAGAAAGAGCATATGTTGCAGTGATGGGACCTGAGAAACGTCACAGTGTTCGCGGTTATGGACTAGGTGTAATACTTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACAGATCACATGGAAGACATTATGCTCACTTGCAATCACAATTTATGGAGTTAGAGTCCAAGTACCAACAACAAGAAGAACAAGCACAGGTGCAGCAAGTTCAAACTCAAGAACAACTCTTGCAAACCCAACGAGAATTGGCAATGTTAAAGCAAATGATACAATCCCAGCAATCTACTCCACCTTCACAACAATCTTCTCAGCTGTTGCAGCAACCATCCTTCCATATGCCTTCTTATCCTCCTCAAATGTACTGGTCTCAACCACAGATCTATCCTCAAATGCCTTATCAGCCTCAACATGCTTATCCTACCACTGGACTAACTGGATTGCTTATGGGAGATACAAGTGTCCAAGAAACTGATTTGTTAAACCAGCTTAGAGCTTCATCGAATCAAAGCTCTCGTGGATCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_24

Protein Analysis

310

Amino Acids

35.66

Weight (kDa)

7.0

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2H2-zf_KIN17	PF25095	6 - 33	8.3e-11	KIN17 C2H2-type zinc finger domain
Transposase_24	PF03004	50 - 153	5.9e-11	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001007)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17840
malus_domestica	MD02G1315300.v1.1 MD03G1030900.v1.1 MD03G1034200.v1.1 MD03G1064000.v1.1 MD03G1145300.v1.1 MD15G1288300.v1.1
pyrus_communis	pycom02g26430 pycom04g18660 pycom13g22970
rosa_chinensis	RchiOBHm_Chr2g0166051
rosa_laevigata	RLG00000002408 RLG00000007400 RLG00000007549 RLG00000013276 RLG00000030687 RLG00000036730
rosa_multiflora	Rmu_sc0000258.1_g000019 Rmu_sc0002232.1_g000009 Rmu_sc0007367.1_g000002 Rmu_sc0008431.1_g000004 Rmu_sc0008552.1_g000001 Rmu_sc0032481.1_g000001 Rmu_sc0040697.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099520 Rroxscaffold_3G00264660 Rroxscaffold_5G00336170 Rroxscaffold_5G00358110 Rroxscaffold_7G00164120
rosa_rugosa	Rorug02G0403100 Rorug02G0403200 Rorug05G0410200
rosa_samantha	Rh1CG076600 Rh1CG259900 Rh2BG119000 Rh2BG597600 Rh2CG120600 Rh2CG568200 Rh3BG275800 Rh3CG257500 Rh3DG326400 Rh4BG131400 Rh5AG429800 Rh5CG249500 Rh5DG106500 Rh5DG206900 Rh5DG495800 Rh5DG495900 Rh6AG013700 Rh6AG013800 Rh6AG142600 Rh6BG012500 Rh6BG234200 Rh7AG070500 Rh7CG439800 Rh7CG518800 Rh7CG518900
rosa_wichuraiana	Rw3G020320 Rw3G029330 Rw6G019820 Rw7G007410 Rw7G033850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	475
AccII	CGCG	2 cut(s)	54, 444
AciI	CCGC	2 cut(s)	52, 444
AclWI	GGATC	2 cut(s)	257, 928
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	2 cut(s)	575, 764
AfiI	CCNNNNNNNGG	1 cut(s)	827
AgsI	TTSAA	3 cut(s)	121, 488, 614
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	7 cut(s)	16, 100, 501, 715, 889, 896, 912
AluI	AGCT	7 cut(s)	16, 100, 501, 715, 889, 896, 912
Alw26I	GTCTC	2 cut(s)	371, 774
AlwI	GGATC	2 cut(s)	257, 928
AlwNI	CAGNNNCTG	1 cut(s)	152
ApeKI	GCWGC	3 cut(s)	230, 604, 721
ApoI	RAATTY	1 cut(s)	160
Asp700I	GAANNNNTTC	2 cut(s)	65, 137
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	377
AsuII	TTCGAA	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	846, 879
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	915
BbsI	GAAGAC	1 cut(s)	532
BbvI	GCAGC	3 cut(s)	242, 616, 733
BccI	CCATC	4 cut(s)	111, 409, 488, 736
BciT130I	CCWGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	371, 774
BfaI	CTAG	2 cut(s)	201, 455
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	353
BglII	AGATCT	2 cut(s)	135, 780
BisI	GCNGC	4 cut(s)	52, 231, 605, 722
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	4 cut(s)	53, 232, 606, 723
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	420, 477
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	532
Bpu1102I	GCTNAGC	1 cut(s)	333
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	3 cut(s)	103, 224, 603
BsaAI	YACGTR	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	774
BsaWI	WCCGGW	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	551, 581
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse1I	ACTGG	3 cut(s)	770, 832, 841
Bse3DI	GCAATG	2 cut(s)	53, 660
BseBI	CCWGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	728
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMI	GCAATG	2 cut(s)	53, 660
BseMII	CTCAG	4 cut(s)	144, 414, 725, 915
BseNI	ACTGG	3 cut(s)	770, 832, 841
BseRI	GAGGAG	1 cut(s)	744
BseXI	GCAGC	3 cut(s)	242, 616, 733
BseYI	CCCAGC	1 cut(s)	678
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	2 cut(s)	54, 444
BshNI	GGYRCC	1 cut(s)	475
BsiSI	CCGG	1 cut(s)	19
BslFI	GGGAC	3 cut(s)	18, 38, 432
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmAI	GTCTC	2 cut(s)	371, 774
BsmFI	GGGAC	3 cut(s)	18, 38, 432
Bso31I	GGTCTC	1 cut(s)	774
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	135, 262, 515, 780, 920
Bsp1720I	GCTNAGC	1 cut(s)	333
BspACI	CCGC	2 cut(s)	52, 444
BspCNI	CTCAG	4 cut(s)	145, 415, 724, 916
BspFNI	CGCG	2 cut(s)	54, 444
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	420, 477
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	257, 928
BspT104I	TTCGAA	1 cut(s)	69
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	774
BsrDI	GCAATG	2 cut(s)	53, 660
BsrI	ACTGG	3 cut(s)	770, 832, 841
BssMI	GATC	5 cut(s)	135, 262, 515, 780, 920
BssSI	CACGAG	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	915
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	6 cut(s)	153, 333, 423, 711, 890, 924
BstF5I	GGATG	1 cut(s)	728
BstFNI	CGCG	2 cut(s)	54, 444
BstKTI	GATC	5 cut(s)	138, 265, 518, 783, 923
BstMAI	GTCTC	2 cut(s)	371, 774
BstMBI	GATC	5 cut(s)	135, 262, 515, 780, 920
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 407, 721, 802
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	381
BstUI	CGCG	2 cut(s)	54, 444
BstV1I	GCAGC	3 cut(s)	242, 616, 733
BstV2I	GAAGAC	1 cut(s)	532
BstX2I	RGATCY	3 cut(s)	135, 780, 920
BstYI	RGATCY	3 cut(s)	135, 780, 920
BtsCI	GGATG	1 cut(s)	728
BtsI	GCAGTG	2 cut(s)	76, 417
BtsIMutI	CAGTG	4 cut(s)	76, 417, 442, 825
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	2 cut(s)	574, 763
CviAII	CATG	5 cut(s)	8, 248, 254, 521, 812
CviQI	GTAC	2 cut(s)	574, 763
DdeI	CTNAG	6 cut(s)	153, 333, 423, 711, 890, 924
DpnI	GATC	5 cut(s)	137, 264, 517, 782, 922
DpnII	GATC	5 cut(s)	135, 262, 515, 780, 920
Eco24I	GRGCYC	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	774
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	261
FaeI	CATG	5 cut(s)	11, 251, 257, 524, 815
FaqI	GGGAC	3 cut(s)	18, 38, 432
FatI	CATG	5 cut(s)	7, 247, 253, 520, 811
FauNDI	CATATG	2 cut(s)	403, 738
Fnu4HI	GCNGC	4 cut(s)	52, 231, 605, 722
FokI	GGATG	1 cut(s)	715
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	4 cut(s)	52, 231, 605, 722
FspBI	CTAG	2 cut(s)	201, 455
GluI	GCNGC	4 cut(s)	52, 231, 605, 722
GsaI	CCCAGC	1 cut(s)	682
HapII	CCGG	1 cut(s)	19
Hin1II	CATG	5 cut(s)	11, 251, 257, 524, 815
HinfI	GANTC	2 cut(s)	566, 904
HpaII	CCGG	1 cut(s)	19
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	925
Hpy188III	TCNNGA	3 cut(s)	241, 254, 620
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	4 cut(s)	362, 705, 742, 753
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	2 cut(s)	35, 430
HpyCH4V	TGCA	8 cut(s)	167, 218, 362, 410, 544, 604, 634, 721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 407, 721, 802
HpyF3I	CTNAG	6 cut(s)	153, 333, 423, 711, 890, 924
HpySE526I	ACGT	2 cut(s)	35, 430
Hsp92II	CATG	5 cut(s)	11, 251, 257, 524, 815
Kzo9I	GATC	5 cut(s)	135, 262, 515, 780, 920
LmnI	GCTCC	2 cut(s)	21, 105
Lsp1109I	GCAGC	3 cut(s)	242, 616, 733
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	2 cut(s)	201, 455
MaeII	ACGT	2 cut(s)	35, 430
MaeIII	GTNAC	2 cut(s)	74, 431
MalI	GATC	5 cut(s)	137, 264, 517, 782, 922
MboI	GATC	5 cut(s)	135, 262, 515, 780, 920
MboII	GAAGA	7 cut(s)	130, 145, 169, 476, 537, 599, 699
MflI	RGATCY	3 cut(s)	135, 780, 920
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	5 cut(s)	160, 354, 489, 551, 647
MlyI	GAGTC	1 cut(s)	575
MnlI	CCTC	7 cut(s)	101, 152, 208, 762, 765, 798, 816
MroXI	GAANNNNTTC	2 cut(s)	65, 137
MseI	TTAA	2 cut(s)	659, 881
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	715
MspI	CCGG	1 cut(s)	19
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MvnI	CGCG	2 cut(s)	54, 444
MwoI	GCNNNNNNNGC	4 cut(s)	36, 407, 721, 802
NdeI	CATATG	2 cut(s)	403, 738
NdeII	GATC	5 cut(s)	135, 262, 515, 780, 920
NlaIII	CATG	5 cut(s)	11, 251, 257, 524, 815
NlaIV	GGNNCC	2 cut(s)	420, 477
NmuCI	GTSAC	2 cut(s)	74, 431
NspI	RCATGY	1 cut(s)	815
NspV	TTCGAA	1 cut(s)	69
PagI	TCATGA	1 cut(s)	253
PaqCI	CACCTGC	1 cut(s)	353
PdmI	GAANNNNTTC	2 cut(s)	65, 137
PfeI	GAWTC	1 cut(s)	904
PkrI	GCNGC	4 cut(s)	53, 232, 606, 723
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
Ppu21I	YACGTR	1 cut(s)	36
PpuMI	RGGWCCY	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	420, 477
PspPI	GGNCC	1 cut(s)	419
PspPPI	RGGWCCY	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	3 cut(s)	135, 780, 920
PvuII	CAGCTG	1 cut(s)	715
RsaI	GTAC	2 cut(s)	575, 764
RsaNI	GTAC	2 cut(s)	574, 763
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	659, 881
SatI	GCNGC	4 cut(s)	52, 231, 605, 722
Sau3AI	GATC	5 cut(s)	135, 262, 515, 780, 920
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	378
SfcI	CTRYAG	1 cut(s)	381
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	82, 239, 618
SmoI	CTYRAG	3 cut(s)	82, 239, 618
Sse9I	AATT	5 cut(s)	160, 354, 489, 551, 647
SsiI	CCGC	2 cut(s)	52, 444
SspMI	CTAG	2 cut(s)	201, 455
StyD4I	CCNGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	2 cut(s)	38, 433
TaqI	TCGA	5 cut(s)	69, 106, 172, 226, 902
TasI	AATT	5 cut(s)	160, 354, 489, 551, 647
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	904
Tru1I	TTAA	2 cut(s)	659, 881
Tru9I	TTAA	2 cut(s)	659, 881
TscAI	CASTG	4 cut(s)	83, 417, 442, 832
TseFI	GTSAC	2 cut(s)	74, 431
TseI	GCWGC	3 cut(s)	230, 604, 721
Tsp45I	GTSAC	2 cut(s)	74, 431
TspDTI	ATGAA	2 cut(s)	339, 888
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	4 cut(s)	83, 417, 442, 832
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	815
XmnI	GAANNNNTTC	2 cut(s)	65, 137
XspI	CTAG	2 cut(s)	201, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.