Rh1CG259900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
52432253 .. 52434088
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG259900.1

Sequence Viewer

Length: 312 bp
ATGCAAGAGAAGTTGGCAGAAATTGTTGCAGTTGAAGGTAATGAGACTACAGAGGTGCGAGAAAGAGCATATGTTGCGGTGATGGGACCTGAGAAGCGTCACAGAGTTTGCAGTTATGGACTAGGTGTAATACCTGATATGGTGCCTTATCTTCAAATTGATGGTAGCTCATCATCACACATATCACTTGGAAGACACTATGCTCACTTGCATTCACAATTTATGGAGTTCGAATCCAAGTACCAACAACAACAAGAGCAAGCCCAGGTGCAACAAGTTCAAACTCAAGAACAACTCTTGCAAACCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.82

Weight (kDa)

5.43

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AciI CCGC 1 cut(s) 77
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 35, 155, 281
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 231
AvaII GGWCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 199
BccI CCATC 2 cut(s) 76, 155
BciT130I CCWGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 48
Bme1390I CCNGG 1 cut(s) 266
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 2 cut(s) 87, 144
BmrFI CCNGG 1 cut(s) 266
BpiI GAAGAC 1 cut(s) 199
Bpu14I TTCGAA 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 81
BshNI GGYRCC 1 cut(s) 142
BslFI GGGAC 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 231
BspACI CCGC 1 cut(s) 77
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 87, 144
BspT104I TTCGAA 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 74
BstBI TTCGAA 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 38
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 1 cut(s) 48
BstV2I GAAGAC 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 241
CviJI RGCY 2 cut(s) 168, 263
CviKI_1 RGCY 2 cut(s) 168, 263
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 264
FaiI YATR 7 cut(s) 70, 72, 117, 140, 182, 201, 224
FaqI GGGAC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 70
FspBI CTAG 1 cut(s) 122
HgaI GACGC 1 cut(s) 86
HinfI GANTC 1 cut(s) 233
HphI GGTGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 29
HpyCH4V TGCA 6 cut(s) 4, 29, 111, 211, 271, 301
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 90
LpnPI CCDG 4 cut(s) 102, 147, 251, 278
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 98
MboII GAAGA 2 cut(s) 143, 204
MluCI AATT 3 cut(s) 21, 156, 218
MnlI CCTC 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 266
Mva1269I GAATGC 1 cut(s) 211
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 74
NdeI CATATG 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 87, 144
NmuCI GTSAC 1 cut(s) 98
NspV TTCGAA 1 cut(s) 231
PctI GAATGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 2 cut(s) 87, 144
PspPI GGNCC 1 cut(s) 86
PspPPI RGGWCCY 1 cut(s) 86
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 266
SetI ASST 7 cut(s) 40, 57, 91, 127, 136, 170, 270
SfcI CTRYAG 1 cut(s) 48
SfuI TTCGAA 1 cut(s) 231
SinI GGWCC 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 3 cut(s) 21, 156, 218
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 264
TaqI TCGA 1 cut(s) 231
TasI AATT 3 cut(s) 21, 156, 218
TfiI GAWTC 1 cut(s) 233
TseFI GTSAC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 86
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.