Rw6G019820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001007
Physical Location & Seq
Forward (+)
39544546 .. 39546872
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G019820.1

Sequence Viewer

Length: 723 bp
ATGAGTTCTGAAGATAGTTCATGGGAAGGTGATATAGAAGGACTAAGTGATTCTGCTAATGGCACATTACGTGGTAAAGGAACATGTACTTGGATGGAAGATAACAAAAAAAAATCCCTCGAGTTCAATTCTATGGGTGTTAGTGTAGGTTCTAATGATGGAAAATTTGGCCAGTACTTGGGTGGGTTAGCTCGAGATTCTAATGTACTTCCGCTCGTCACTAAACCTTGGCCTAAAGTCTCAAGTACTATTAAAGATCCCTTATGGGACCAAATATATGCAACTATTGAATGGAAACCTGAAGATCTTCCTCGTATGCCTCTCATAAAGCATAACATAATGGAAAGAGTTGCTAAATATTGGAGAAGCTACAAGAACAGACTTAAGAAAGCTCATTATGGTCCCAAAATAGGCATACCAGGACGTTGGGTGTGTGGGAATAAAGATGTCAACGCAGCTGAATGGCGCAAAATGGTGAAATATTGGGATACTGAAAAGACAACAGTAATTGCTGAGAAGAATTCTGCAAATCGAAAAGAACAAAAATACAATCACACCTCTGGCACCAAGAGTTATGCACGCAGTCAAGCAGAATATCTCAAGAAGCATGGTCATGAGCCCGATCCTATTCAGTTTTTTTTTATGATAAGCATACACGGAATGACAAAGAAAAAACTTGGATTGATGAAGTTGCTGAGCGGACACATGCATTTGACTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

240

Amino Acids

27.47

Weight (kDa)

9.63

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 153 - 213 1.7e-13 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 563
AccB7I CCANNNNNTGG 1 cut(s) 178
AccBSI CCGCTC 2 cut(s) 214, 699
AciI CCGC 2 cut(s) 212, 699
AclWI GGATC 2 cut(s) 251, 617
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 2 cut(s) 164, 520
AcuI CTGAAG 2 cut(s) 30, 321
AfaI GTAC 4 cut(s) 88, 176, 207, 247
AfiI CCNNNNNNNGG 2 cut(s) 178, 410
AflII CTTAAG 1 cut(s) 383
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 2 cut(s) 127, 290
AjnI CCWGG 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 4 cut(s) 191, 369, 392, 458
AluI AGCT 4 cut(s) 191, 369, 392, 458
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 2 cut(s) 251, 617
Ama87I CYCGRG 2 cut(s) 119, 192
AoxI GGCC 2 cut(s) 169, 230
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 2 cut(s) 164, 520
Asp700I GAANNNNTTC 1 cut(s) 306
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 2 cut(s) 268, 401
AsuHPI GGTGA 2 cut(s) 41, 487
AvaI CYCGRG 2 cut(s) 119, 192
AvaII GGWCC 2 cut(s) 268, 401
BalI TGGCCA 1 cut(s) 171
BanI GGYRCC 1 cut(s) 563
BanII GRGCYC 1 cut(s) 621
BbvI GCAGC 1 cut(s) 467
BccI CCATC 2 cut(s) 88, 152
BciT130I CCWGG 1 cut(s) 420
BciVI GTATCC 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 1 cut(s) 717
BfrI CTTAAG 1 cut(s) 383
BfuI GTATCC 1 cut(s) 481
BglII AGATCT 1 cut(s) 304
BisI GCNGC 1 cut(s) 456
BlpI GCTNAGC 1 cut(s) 695
BlsI GCNGC 1 cut(s) 457
BmcAI AGTACT 2 cut(s) 176, 247
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 2 cut(s) 268, 401
BmeT110I CYCGRG 2 cut(s) 119, 192
BmgT120I GGNCC 2 cut(s) 268, 401
BmiI GGNNCC 3 cut(s) 269, 403, 565
BmrFI CCNGG 1 cut(s) 420
Bpu1102I GCTNAGC 1 cut(s) 695
BpuEI CTTGAG 2 cut(s) 226, 584
BsaAI YACGTR 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 410
Bse1I ACTGG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 420
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 178, 410
BseMII CTCAG 2 cut(s) 504, 686
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 467
BshFI GGCC 2 cut(s) 171, 232
BshNI GGYRCC 1 cut(s) 563
BsiHKCI CYCGRG 2 cut(s) 119, 192
BslFI GGGAC 2 cut(s) 281, 387
BslI CCNNNNNNNGG 2 cut(s) 178, 410
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 2 cut(s) 281, 387
BsnI GGCC 2 cut(s) 171, 232
BsoBI CYCGRG 2 cut(s) 119, 192
Bsp1286I GDGCHC 1 cut(s) 621
Bsp143I GATC 3 cut(s) 256, 304, 622
Bsp1720I GCTNAGC 1 cut(s) 695
BspACI CCGC 2 cut(s) 212, 699
BspANI GGCC 2 cut(s) 171, 232
BspCNI CTCAG 2 cut(s) 505, 687
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 3 cut(s) 269, 403, 565
BspPI GGATC 2 cut(s) 251, 617
BspT107I GGYRCC 1 cut(s) 563
BspTI CTTAAG 1 cut(s) 383
BsrBI CCGCTC 2 cut(s) 214, 699
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 3 cut(s) 256, 304, 622
BssT1I CCWWGG 1 cut(s) 227
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 505
BstAFI CTTAAG 1 cut(s) 383
BstBAI YACGTR 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 580
BstDEI CTNAG 3 cut(s) 44, 513, 695
BstF5I GGATG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 3 cut(s) 259, 307, 625
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 3 cut(s) 256, 304, 622
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 2 cut(s) 87, 709
BstSCI CCNGG 1 cut(s) 418
BstV1I GCAGC 1 cut(s) 467
BstX2I RGATCY 2 cut(s) 256, 304
BstXI CCANNNNNNTGG 1 cut(s) 426
BstYI RGATCY 2 cut(s) 256, 304
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 2 cut(s) 171, 232
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 1 cut(s) 580
CciI TCATGA 1 cut(s) 613
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 2 cut(s) 268, 401
Csp6I GTAC 4 cut(s) 87, 175, 206, 246
CviAII CATG 5 cut(s) 21, 84, 608, 614, 706
CviJI RGCY 7 cut(s) 171, 191, 232, 369, 392, 458, 619
CviKI_1 RGCY 7 cut(s) 171, 191, 232, 369, 392, 458, 619
CviQI GTAC 4 cut(s) 87, 175, 206, 246
DdeI CTNAG 3 cut(s) 44, 513, 695
DpnI GATC 3 cut(s) 258, 306, 624
DpnII GATC 3 cut(s) 256, 304, 622
EaeI YGGCCR 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 268, 401
Eco57I CTGAAG 2 cut(s) 30, 321
Eco88I CYCGRG 2 cut(s) 119, 192
EcoRI GAATTC 1 cut(s) 520
EcoRII CCWGG 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 227
EcoT22I ATGCAT 1 cut(s) 711
EcoT38I GRGCYC 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 5 cut(s) 24, 87, 611, 617, 709
FaqI GGGAC 2 cut(s) 281, 387
FatI CATG 5 cut(s) 20, 83, 607, 613, 705
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 621
Fsp4HI GCNGC 1 cut(s) 456
FspBI CTAG 1 cut(s) 717
GlaI GCGC 1 cut(s) 467
GluI GCNGC 1 cut(s) 456
HaeIII GGCC 2 cut(s) 171, 232
HhaI GCGC 1 cut(s) 468
Hin1II CATG 5 cut(s) 24, 87, 611, 617, 709
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 2 cut(s) 50, 197
HphI GGTGA 2 cut(s) 41, 487
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 3 cut(s) 194, 601, 614
Hpy8I GTNNAC 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 20, 32
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 2 cut(s) 70, 424
HpyCH4V TGCA 4 cut(s) 281, 527, 578, 709
HpyF3I CTNAG 3 cut(s) 44, 513, 695
HpySE526I ACGT 2 cut(s) 70, 424
Hsp92II CATG 5 cut(s) 24, 87, 611, 617, 709
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 3 cut(s) 256, 304, 622
LpnPI CCDG 5 cut(s) 185, 312, 405, 432, 546
Lsp1109I GCAGC 1 cut(s) 467
MaeI CTAG 1 cut(s) 717
MaeII ACGT 2 cut(s) 70, 424
MaeIII GTNAC 1 cut(s) 217
MalI GATC 3 cut(s) 258, 306, 624
MbiI CCGCTC 2 cut(s) 214, 699
MboI GATC 3 cut(s) 256, 304, 622
MboII GAAGA 5 cut(s) 23, 110, 299, 314, 529
MflI RGATCY 2 cut(s) 256, 304
MhlI GDGCHC 1 cut(s) 621
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 4 cut(s) 127, 164, 507, 520
MluNI TGGCCA 1 cut(s) 171
MnlI CCTC 4 cut(s) 128, 321, 330, 568
Mox20I TGGCCA 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 711
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 1 cut(s) 171
MseI TTAA 2 cut(s) 252, 384
MslI CAYNNNNRTG 1 cut(s) 612
Msp20I TGGCCA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 458
MspCI CTTAAG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 420
NdeII GATC 3 cut(s) 256, 304, 622
NlaIII CATG 5 cut(s) 24, 87, 611, 617, 709
NlaIV GGNNCC 3 cut(s) 269, 403, 565
NmuCI GTSAC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 711
NspI RCATGY 2 cut(s) 87, 709
PaeR7I CTCGAG 2 cut(s) 119, 192
PagI TCATGA 1 cut(s) 613
PciI ACATGT 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 50, 197
PflMI CCANNNNNTGG 1 cut(s) 178
PkrI GCNGC 1 cut(s) 457
Ppu21I YACGTR 1 cut(s) 71
PscI ACATGT 1 cut(s) 83
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 3 cut(s) 269, 403, 565
PspPI GGNCC 2 cut(s) 268, 401
PspXI VCTCGAGB 1 cut(s) 119
PsuI RGATCY 2 cut(s) 256, 304
PvuII CAGCTG 1 cut(s) 458
RsaI GTAC 4 cut(s) 88, 176, 207, 247
RsaNI GTAC 4 cut(s) 87, 175, 206, 246
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 2 cut(s) 252, 384
SatI GCNGC 1 cut(s) 456
Sau3AI GATC 3 cut(s) 256, 304, 622
Sau96I GGNCC 2 cut(s) 268, 401
ScaI AGTACT 2 cut(s) 176, 247
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 1 cut(s) 621
Sfr274I CTCGAG 2 cut(s) 119, 192
SinI GGWCC 2 cut(s) 268, 401
SlaI CTCGAG 2 cut(s) 119, 192
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 5 cut(s) 119, 192, 241, 383, 599
SmoI CTYRAG 5 cut(s) 119, 192, 241, 383, 599
Sse9I AATT 4 cut(s) 127, 164, 507, 520
SsiI CCGC 2 cut(s) 212, 699
SspI AATATT 2 cut(s) 359, 482
SspMI CTAG 1 cut(s) 717
StyD4I CCNGG 1 cut(s) 418
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 2 cut(s) 73, 427
TaqI TCGA 3 cut(s) 120, 193, 532
TasI AATT 4 cut(s) 127, 164, 507, 520
TatI WGTACW 4 cut(s) 86, 174, 205, 245
TfiI GAWTC 2 cut(s) 50, 197
Tru1I TTAA 2 cut(s) 252, 384
Tru9I TTAA 2 cut(s) 252, 384
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 9, 701
TspGWI ACGGA 1 cut(s) 672
Van91I CCANNNNNTGG 1 cut(s) 178
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 268, 401
XapI RAATTY 2 cut(s) 164, 520
XceI RCATGY 2 cut(s) 87, 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XhoI CTCGAG 2 cut(s) 119, 192
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 1 cut(s) 717
ZrmI AGTACT 2 cut(s) 176, 247
Zsp2I ATGCAT 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.