FvH4_6g03222

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000661
Physical Location & Seq
Reverse (-)
1800088 .. 1800434
347 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g03222.t1

Sequence Viewer

Length: 306 bp
ATGGAGATTGATAAGAAAGAAGTGGATGTTTTGATCCCTGTGGTGGTGGCCGTTGTTTCGGATTCTCCACCTTCGAATGAGCTTGGACTTGTAGAGAGTGAGGGAGGAGTGGAAGAGATAATTCCAATGAAGAGGTTGAAGATGGATTGGGATACATATGTTCCTAAATCTTTAAATGTCAGGGGAAACGGTGGCCTAGCGAAGTTTGAATATGCCGTGTTTAAATCCGGCGGCGCAAGTAATGTGTGTCATGAACTTCAAGTCCATGAGGAGCTTGAGTTGTCCTCAGACCTCTCACATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.04

Weight (kDa)

4.63

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 3 cut(s) 139, 209, 260
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
AluBI AGCT 2 cut(s) 82, 274
AluI AGCT 2 cut(s) 82, 274
AlwI GGATC 1 cut(s) 28
AoxI GGCC 2 cut(s) 48, 193
AspLEI GCGC 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 74
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BccI CCATC 1 cut(s) 136
BceAI ACGGC 2 cut(s) 35, 200
BciVI GTATCC 1 cut(s) 145
BfaI CTAG 1 cut(s) 197
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
BplI GAGNNNNNCTC 2 cut(s) 269, 301
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 296
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 2 cut(s) 120, 284
BshFI GGCC 2 cut(s) 50, 195
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 43
BsnI GGCC 2 cut(s) 50, 195
Bsp119I TTCGAA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 231
BspANI GGCC 2 cut(s) 50, 195
BspCNI CTCAG 1 cut(s) 299
BspHI TCATGA 1 cut(s) 250
BspPI GGATC 1 cut(s) 28
BspT104I TTCGAA 1 cut(s) 74
BssMI GATC 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 191
Bst6I CTCTTC 2 cut(s) 108, 125
BstBI TTCGAA 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 302
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 2 cut(s) 50, 195
BtsCI GGATG 1 cut(s) 31
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 236
CviAII CATG 3 cut(s) 251, 266, 299
CviJI RGCY 4 cut(s) 50, 82, 195, 274
CviKI_1 RGCY 4 cut(s) 50, 82, 195, 274
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
DraI TTTAAA 2 cut(s) 174, 223
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 108, 125
EarI CTCTTC 2 cut(s) 108, 125
FaeI CATG 3 cut(s) 254, 269, 302
FaiI YATR 6 cut(s) 157, 159, 213, 252, 267, 300
FatI CATG 3 cut(s) 250, 265, 298
FauNDI CATATG 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 197
GlaI GCGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 2 cut(s) 50, 195
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 236
Hin1II CATG 3 cut(s) 254, 269, 302
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 1 cut(s) 62
HpaII CCGG 1 cut(s) 228
Hpy188I TCNGA 2 cut(s) 61, 289
Hpy188III TCNNGA 1 cut(s) 251
HpyAV CCTTC 1 cut(s) 81
HpyCH4III ACNGT 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 286
Hsp92II CATG 3 cut(s) 254, 269, 302
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 3 cut(s) 51, 166, 241
MaeI CTAG 1 cut(s) 197
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 3 cut(s) 125, 142, 151
MluCI AATT 1 cut(s) 120
MnlI CCTC 6 cut(s) 94, 98, 126, 262, 295, 302
MseI TTAA 2 cut(s) 173, 222
MspI CCGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 157
NdeII GATC 1 cut(s) 33
NlaIII CATG 3 cut(s) 254, 269, 302
NspI RCATGY 1 cut(s) 302
NspV TTCGAA 1 cut(s) 74
PagI TCATGA 1 cut(s) 250
PciI ACATGT 1 cut(s) 298
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 233
PscI ACATGT 1 cut(s) 298
SaqAI TTAA 2 cut(s) 173, 222
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 33
SetI ASST 5 cut(s) 73, 84, 137, 276, 294
SfuI TTCGAA 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 1 cut(s) 120
SsiI CCGC 1 cut(s) 231
SspMI CTAG 1 cut(s) 197
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 1 cut(s) 74
TasI AATT 1 cut(s) 120
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 173, 222
Tru9I TTAA 2 cut(s) 173, 222
TspDTI ATGAA 2 cut(s) 143, 267
XceI RCATGY 1 cut(s) 302
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.