Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8173672.1

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 664

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8173672.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 476 bp

agggtccatggaaggctgcctttcctgttgggacaccaaggtcacttttggactcgccattctaccattctttcaagtggtatttctcgaatcttgaaggagcactcgaagaagggggaaagctgtacaagaatagcaacagagtctatctattcggctccacggaggaggccatggttaaaagagaagtggttgctttgatccccgtggtggtggcagttgtttgggcttctccgccttccaatgagcttggacttgttttaagtgagggaagagtggaagagataattccgatgaagagattgaagacagactgggctccgaagaggagaagtaccttagtgctaatgatgatgagctggagcctggaggagttgtacttcagtggtgaatatgaggatgcggtaatagaagaagatgatgaaaagaatgtcaaggtggaagaagaagcaaagggagaaaatattgaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.86

Weight (kDa)

4.76

Isoelectric Point (pI)

64.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	39
AciI	CCGC	2 cut(s)	235, 403
AclWI	GGATC	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	3 cut(s)	127, 336, 379
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	4 cut(s)	75, 97, 306, 469
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	3 cut(s)	123, 249, 359
AluI	AGCT	3 cut(s)	123, 249, 359
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	3
BciT130I	CCWGG	1 cut(s)	367
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	367
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	5, 159, 320, 364
BmrFI	CCNGG	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	2 cut(s)	381, 388
BsaJI	CCNNGG	5 cut(s)	7, 37, 161, 173, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	367
BseDI	CCNNGG	5 cut(s)	7, 37, 161, 173, 206
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	3 cut(s)	181, 342, 385
BseXI	GCAGC	1 cut(s)	3
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	105, 321
Bsp1407I	TGTACA	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	200
Bsp19I	CCATGG	2 cut(s)	7, 173
BspACI	CCGC	2 cut(s)	235, 403
BspANI	GGCC	1 cut(s)	172
BspLI	GGNNCC	4 cut(s)	5, 159, 320, 364
BspPI	GGATC	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	5 cut(s)	7, 37, 161, 173, 206
BssMI	GATC	1 cut(s)	200
BssT1I	CCWWGG	3 cut(s)	7, 37, 173
Bst2UI	CCWGG	1 cut(s)	367
Bst6I	CTCTTC	4 cut(s)	267, 275, 292, 319
BstAUI	TGTACA	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	339
BstDSI	CCRYGG	4 cut(s)	7, 161, 173, 206
BstF5I	GGATG	1 cut(s)	405
BstKTI	GATC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	4 cut(s)	7, 161, 173, 206
BtsCI	GGATG	1 cut(s)	405
BtsIMutI	CAGTG	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	126, 335, 378
CviAII	CATG	2 cut(s)	8, 174
CviJI	RGCY	9 cut(s)	16, 123, 158, 172, 229, 249, 319, 359, 365
CviKI_1	RGCY	9 cut(s)	16, 123, 158, 172, 229, 249, 319, 359, 365
CviQI	GTAC	3 cut(s)	126, 335, 378
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
DrdI	GACNNNNNNGTC	1 cut(s)	39
DseDI	GACNNNNNNGTC	1 cut(s)	39
Eam1104I	CTCTTC	4 cut(s)	267, 275, 292, 319
EarI	CTCTTC	4 cut(s)	267, 275, 292, 319
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	3 cut(s)	7, 37, 173
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	366
EcoRII	CCWGG	1 cut(s)	365
EcoT14I	CCWWGG	3 cut(s)	7, 37, 173
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	3 cut(s)	7, 37, 173
FaeI	CATG	2 cut(s)	11, 177
FaiI	YATR	3 cut(s)	9, 175, 395
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	2 cut(s)	7, 173
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	17
GsuI	CTGGAG	2 cut(s)	381, 388
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	11, 177
HinfI	GANTC	3 cut(s)	52, 90, 143
HphI	GGTGA	1 cut(s)	400
Hpy188I	TCNGA	2 cut(s)	293, 323
Hpy188III	TCNNGA	2 cut(s)	87, 94
HpyAV	CCTTC	4 cut(s)	6, 91, 106, 248
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	11, 177
Kzo9I	GATC	1 cut(s)	200
LmnI	GCTCC	4 cut(s)	100, 163, 324, 362
LpnPI	CCDG	5 cut(s)	38, 300, 345, 352, 379
Lsp1109I	GCAGC	1 cut(s)	3
LweI	GCATC	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MhlI	GDGCHC	2 cut(s)	105, 321
MluCI	AATT	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	46, 152
MnlI	CCTC	6 cut(s)	159, 162, 261, 320, 363, 390
MseI	TTAA	2 cut(s)	179, 262
MspR9I	CCNGG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	367
NcoI	CCATGG	2 cut(s)	7, 173
NdeII	GATC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	11, 177
NlaIV	GGNNCC	4 cut(s)	5, 159, 320, 364
NmuCI	GTSAC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	18
PleI	GAGTC	2 cut(s)	46, 151
PpsI	GAGTC	2 cut(s)	46, 151
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	4 cut(s)	5, 159, 320, 364
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	3 cut(s)	127, 336, 379
RsaNI	GTAC	3 cut(s)	126, 335, 378
SaqAI	TTAA	2 cut(s)	179, 262
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	1 cut(s)	200
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	46, 152
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	2 cut(s)	105, 321
SetI	ASST	6 cut(s)	43, 125, 251, 340, 361, 440
SfaNI	GCATC	1 cut(s)	390
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	235, 403
SspI	AATATT	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	365
StyI	CCWWGG	3 cut(s)	7, 37, 173
TaqI	TCGA	2 cut(s)	88, 107
TasI	AATT	1 cut(s)	287
TatI	WGTACW	2 cut(s)	125, 377
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	2 cut(s)	179, 262
Tru9I	TTAA	2 cut(s)	179, 262
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	310, 437
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.