Rmu_sc0009360.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009360.1
OG0000661
Physical Location & Seq
Forward (+)
9423 .. 11034
1612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009360.1_g000006.1.cds

Sequence Viewer

Length: 855 bp
atggtgtggatcatcttgacggcgcaggccgccggcttggtaactgactcagaccttctgacgatctcgcacgctgcgacacacagaacgggtcagaccctcttgcctccggcgaggaaagattaccgcttcgtggatcagccccgacatgccgagtacagctcggaggagccccagagcctagagggtctatggaaggctgcctttcctgctgggacaccgaggtctctttgggactcgtcactctaccattctttcaagtgggatttctcgaatcttgaaggagcactcgaagaagggggaaagctgtacaagaagagcaacacagtctatcaattcggctccacggaggaggccatggttagaaaagaagtggttgctttgatccctgtggttgtggccgttgtttcggcttctccgccttcaaatgagcttggactcgtagagagtaagggagaagtggaaaagagaatattgatgaagagattgaagatggaatgggctccatatgttcgtttagacaagagagtaaacaacgaagttcatgttcatgaggaggaggagtactttagtgctaataatgatgagctggaggagttgtacttcagtgttgacgatgagaaccaggtgatagaagaagatagcgaaaagaatgtcaaggtggaagaagaagcaaagggagaaaatattgatcttggagttagggaaggcggccagagaagaagtgtggagaatataatgaagatgaggatttacaagttctatccggtacaaacaccggatactcctgacgtatctgagtttaagaatgcatttgtaaacaggtactatggcactgctcatgagattctgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

32.41

Weight (kDa)

4.97

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 223
AciI CCGC 4 cut(s) 30, 127, 419, 711
AclWI GGATC 3 cut(s) 17, 144, 379
AcoI YGGCCR 2 cut(s) 399, 712
AcuI CTGAAG 1 cut(s) 589
AfaI GTAC 6 cut(s) 158, 311, 566, 602, 771, 827
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 4 cut(s) 259, 281, 426, 490
AjnI CCWGG 1 cut(s) 624
AluBI AGCT 4 cut(s) 162, 307, 433, 589
AluI AGCT 4 cut(s) 162, 307, 433, 589
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 3 cut(s) 17, 144, 379
AoxI GGCC 4 cut(s) 27, 354, 399, 712
ApeKI GCWGC 2 cut(s) 74, 200
ArsI GACNNNNNNTTYG 2 cut(s) 639, 671
AspLEI GCGC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 640
BanII GRGCYC 2 cut(s) 174, 505
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 61, 187
BccI CCATC 1 cut(s) 487
BceAI ACGGC 2 cut(s) 36, 386
BciT130I CCWGG 1 cut(s) 626
BciVI GTATCC 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 182
BfuI GTATCC 1 cut(s) 775
BisI GCNGC 4 cut(s) 30, 75, 201, 712
BlsI GCNGC 4 cut(s) 31, 76, 202, 713
BmcAI AGTACT 1 cut(s) 566
Bme1390I CCNGG 1 cut(s) 626
BmiI GGNNCC 3 cut(s) 171, 343, 504
BmrFI CCNGG 1 cut(s) 626
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpmI CTGGAG 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 221, 345, 357
BsaWI WCCGGW 2 cut(s) 766, 778
BsaXI ACNNNNNCTCC 4 cut(s) 548, 578, 584, 614
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 32
BseBI CCWGG 1 cut(s) 626
BseDI CCNNGG 3 cut(s) 221, 345, 357
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 63, 789
BseRI GAGGAG 6 cut(s) 182, 365, 569, 572, 575, 608
BseXI GCAGC 2 cut(s) 61, 187
BseYI CCCAGC 1 cut(s) 212
BshFI GGCC 4 cut(s) 29, 356, 401, 714
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 4 cut(s) 33, 110, 767, 779
BslFI GGGAC 2 cut(s) 229, 248
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 231
BsmFI GGGAC 2 cut(s) 229, 248
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 4 cut(s) 29, 356, 401, 714
Bso31I GGTCTC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 174, 289, 505
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 5 cut(s) 9, 63, 136, 384, 691
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 4 cut(s) 30, 127, 419, 711
BspANI GGCC 4 cut(s) 29, 356, 401, 714
BspCNI CTCAG 2 cut(s) 62, 790
BspHI TCATGA 2 cut(s) 550, 841
BspLI GGNNCC 3 cut(s) 171, 343, 504
BspPI GGATC 3 cut(s) 17, 144, 379
BspQI GCTCTTC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 32
BsrGI TGTACA 1 cut(s) 309
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 3 cut(s) 221, 345, 357
BssMI GATC 5 cut(s) 9, 63, 136, 384, 691
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 626
Bst4CI ACNGT 1 cut(s) 328
Bst6I CTCTTC 2 cut(s) 311, 476
BstAUI TGTACA 1 cut(s) 309
BstC8I GCNNGC 3 cut(s) 27, 34, 72
BstDEI CTNAG 2 cut(s) 49, 798
BstDSI CCRYGG 2 cut(s) 345, 357
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 5 cut(s) 12, 66, 139, 387, 694
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 5 cut(s) 9, 63, 136, 384, 691
BstMWI GCNNNNNNNGC 2 cut(s) 29, 209
BstNI CCWGG 1 cut(s) 626
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 624
BstV1I GCAGC 2 cut(s) 61, 187
BsuI GTATCC 1 cut(s) 775
BsuRI GGCC 4 cut(s) 29, 356, 401, 714
BtgI CCRYGG 2 cut(s) 345, 357
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 2 cut(s) 613, 834
Cac8I GCNNGC 3 cut(s) 27, 34, 72
CciI TCATGA 2 cut(s) 550, 841
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 32
CsiI ACCWGGT 1 cut(s) 624
Csp6I GTAC 6 cut(s) 157, 310, 565, 601, 770, 826
CviAII CATG 5 cut(s) 149, 358, 545, 551, 842
CviQI GTAC 6 cut(s) 157, 310, 565, 601, 770, 826
DdeI CTNAG 2 cut(s) 49, 798
DpnI GATC 5 cut(s) 11, 65, 138, 386, 693
DpnII GATC 5 cut(s) 9, 63, 136, 384, 691
DrdI GACNNNNNNGTC 1 cut(s) 223
DseDI GACNNNNNNGTC 1 cut(s) 223
EaeI YGGCCR 2 cut(s) 399, 712
Eam1104I CTCTTC 2 cut(s) 311, 476
EarI CTCTTC 2 cut(s) 311, 476
EciI GGCGGA 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 174, 505
Eco31I GGTCTC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 624
EcoT14I CCWWGG 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 814
EcoT38I GRGCYC 2 cut(s) 174, 505
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 5 cut(s) 152, 361, 548, 554, 845
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 2 cut(s) 229, 248
FatI CATG 5 cut(s) 148, 357, 544, 550, 841
FauNDI CATATG 1 cut(s) 508
Fnu4HI GCNGC 4 cut(s) 30, 75, 201, 712
FriOI GRGCYC 2 cut(s) 174, 505
Fsp4HI GCNGC 4 cut(s) 30, 75, 201, 712
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 24
GluI GCNGC 4 cut(s) 30, 75, 201, 712
GsaI CCCAGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 611
HaeIII GGCC 4 cut(s) 29, 356, 401, 714
HapII CCGG 4 cut(s) 33, 110, 767, 779
HhaI GCGC 1 cut(s) 25
Hin1II CATG 5 cut(s) 152, 361, 548, 554, 845
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 5 cut(s) 47, 236, 274, 438, 847
HpaII CCGG 4 cut(s) 33, 110, 767, 779
HphI GGTGA 1 cut(s) 640
Hpy166II GTNNAC 3 cut(s) 532, 613, 820
Hpy188I TCNGA 5 cut(s) 52, 60, 96, 166, 799
Hpy188III TCNNGA 6 cut(s) 16, 271, 278, 551, 788, 842
Hpy8I GTNNAC 3 cut(s) 532, 613, 820
HpyAV CCTTC 6 cut(s) 65, 190, 275, 290, 432, 701
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 1 cut(s) 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 209
HpyF3I CTNAG 2 cut(s) 49, 798
HpySE526I ACGT 1 cut(s) 792
Hsp92II CATG 5 cut(s) 152, 361, 548, 554, 845
HspAI GCGC 1 cut(s) 23
KroI GCCGGC 1 cut(s) 32
KroNI GCCGGC 1 cut(s) 34
Kzo9I GATC 5 cut(s) 9, 63, 136, 384, 691
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 4 cut(s) 169, 284, 347, 508
Lsp1109I GCAGC 2 cut(s) 61, 187
MabI ACCWGGT 1 cut(s) 624
MaeI CTAG 1 cut(s) 182
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 2 cut(s) 40, 240
MalI GATC 5 cut(s) 11, 65, 138, 386, 693
MboI GATC 5 cut(s) 9, 63, 136, 384, 691
MhlI GDGCHC 3 cut(s) 174, 289, 505
MluCI AATT 1 cut(s) 335
MlyI GAGTC 3 cut(s) 41, 230, 432
Mph1103I ATGCAT 1 cut(s) 814
MroNI GCCGGC 1 cut(s) 32
MseI TTAA 1 cut(s) 804
MslI CAYNNNNRTG 1 cut(s) 549
MspI CCGG 4 cut(s) 33, 110, 767, 779
MspR9I CCNGG 1 cut(s) 626
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 1 cut(s) 626
MwoI GCNNNNNNNGC 2 cut(s) 29, 209
NaeI GCCGGC 1 cut(s) 34
NcoI CCATGG 1 cut(s) 357
NdeI CATATG 1 cut(s) 508
NdeII GATC 5 cut(s) 9, 63, 136, 384, 691
NgoMIV GCCGGC 1 cut(s) 32
NlaIII CATG 5 cut(s) 152, 361, 548, 554, 845
NlaIV GGNNCC 3 cut(s) 171, 343, 504
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 814
NspI RCATGY 1 cut(s) 152
PagI TCATGA 2 cut(s) 550, 841
PciSI GCTCTTC 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PctI GAATGC 1 cut(s) 814
PdiI GCCGGC 1 cut(s) 34
PfeI GAWTC 2 cut(s) 274, 847
PkrI GCNGC 4 cut(s) 31, 76, 202, 713
PleI GAGTC 3 cut(s) 41, 230, 432
PpsI GAGTC 3 cut(s) 41, 230, 432
Psp6I CCWGG 1 cut(s) 624
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 624
PspN4I GGNNCC 3 cut(s) 171, 343, 504
RsaI GTAC 6 cut(s) 158, 311, 566, 602, 771, 827
RsaNI GTAC 6 cut(s) 157, 310, 565, 601, 770, 826
RseI CAYNNNNRTG 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 804
SatI GCNGC 4 cut(s) 30, 75, 201, 712
Sau3AI GATC 5 cut(s) 9, 63, 136, 384, 691
ScaI AGTACT 1 cut(s) 566
SchI GAGTC 3 cut(s) 41, 230, 432
ScrFI CCNGG 1 cut(s) 626
SduI GDGCHC 3 cut(s) 174, 289, 505
SexAI ACCWGGT 1 cut(s) 624
SmiMI CAYNNNNRTG 1 cut(s) 549
Sse9I AATT 1 cut(s) 335
SsiI CCGC 4 cut(s) 30, 127, 419, 711
SspI AATATT 2 cut(s) 474, 688
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 1 cut(s) 624
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 795
TaqI TCGA 2 cut(s) 272, 291
TasI AATT 1 cut(s) 335
TatI WGTACW 4 cut(s) 156, 309, 564, 600
TauI GCSGC 2 cut(s) 32, 714
TfiI GAWTC 2 cut(s) 274, 847
Tru1I TTAA 1 cut(s) 804
Tru9I TTAA 1 cut(s) 804
TscAI CASTG 2 cut(s) 613, 841
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 2 cut(s) 74, 200
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 4 cut(s) 494, 533, 539, 755
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 2 cut(s) 613, 841
XceI RCATGY 1 cut(s) 152
XspI CTAG 1 cut(s) 182
ZrmI AGTACT 1 cut(s) 566
Zsp2I ATGCAT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.