Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

41473466 .. 41474104

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00420140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGATTGGTATTCGATCGGTGCAGAGAGAAGAGGAGATAGTTCCTATGAAGCATATGAAGATGGACTGGATCCCCTACATTCCTTTGGAGCTCAGAGAAGGCTGGAATTTGGAAAGAGCGAGCAAGTCTGGTTCGAATTTGCCTCAGATTTTCGTGCTGGGATGTACTCAGAGGAAGGCAAGCTTGAAGCAGATGAAGGAGGACCGCTGGATGAAGTTCCAGTACTGTGTGCCTTATATATTGAATCCGAAATACGAAGAAGAGAAGGAGCAGAATACTGTGGTGGAATTTTTCTTCCCACGGGAGCCTCAACTGCCGCTGGGATGTGAATTCAATTGGGTCATGGATGAAGTTGAGGATTTCACTGATAAACTTATAGAGGATGAGGAGTTGAGTGAGGATAAGAAGGAGGCATTCATGGAGTTTTTGAAGGAGGAAGTAAAGAACGCTAAGAAGAAGAAGAGGGAAGCGAGGAAGAAGAAAATGGAGGACCCAAAGTATCAGGAAGCTAAAACCTATTATGAGAATATGAGGCTTTACAAGATTTACCCAGTACAAACACCAAACACTCCTGTGATAGAGATGAAGTCTCATTATGTCAACTTCTACTACAGGTTTGCCCATGAGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

25.81

Weight (kDa)

5.84

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	208, 320
AclWI	GGATC	2 cut(s)	67, 80
AcsI	RAATTY	4 cut(s)	109, 139, 290, 332
AfaI	GTAC	3 cut(s)	169, 227, 558
AgsI	TTSAA	4 cut(s)	190, 247, 337, 433
AleI	CACNNNNGTG	1 cut(s)	575
AluBI	AGCT	3 cut(s)	94, 186, 512
AluI	AGCT	3 cut(s)	94, 186, 512
Alw21I	GWGCWC	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	597
AlwI	GGATC	2 cut(s)	67, 80
ApoI	RAATTY	4 cut(s)	109, 139, 290, 332
AspS9I	GGNCC	2 cut(s)	205, 493
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	205, 493
BamHI	GGATCC	1 cut(s)	72
BanII	GRGCYC	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
Bbv12I	GWGCWC	1 cut(s)	96
BccI	CCATC	1 cut(s)	58
BcoDI	GTCTC	1 cut(s)	597
BfmI	CTRYAG	1 cut(s)	613
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
BmcAI	AGTACT	1 cut(s)	227
Bme18I	GGWCC	2 cut(s)	205, 493
BmgT120I	GGNCC	2 cut(s)	205, 493
BmiI	GGNNCC	3 cut(s)	74, 309, 495
BmrI	ACTGGG	1 cut(s)	548
BmuI	ACTGGG	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	302
Bse1I	ACTGG	3 cut(s)	74, 223, 554
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	5 cut(s)	170, 219, 332, 355, 391
BseMII	CTCAG	3 cut(s)	109, 161, 185
BseNI	ACTGG	3 cut(s)	74, 223, 554
BseRI	GAGGAG	2 cut(s)	50, 404
BseYI	CCCAGC	2 cut(s)	160, 322
BsgI	GTGCAG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	20
BsiHKAI	GWGCWC	1 cut(s)	96
BsmAI	GTCTC	1 cut(s)	597
BsmI	GAATGC	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	17, 72
BspACI	CCGC	2 cut(s)	208, 320
BspCNI	CTCAG	3 cut(s)	108, 160, 184
BspLI	GGNNCC	3 cut(s)	74, 309, 495
BspPI	GGATC	2 cut(s)	67, 80
BspT104I	TTCGAA	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	74, 223, 554
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	2 cut(s)	17, 72
Bst4CI	ACNGT	2 cut(s)	230, 283
Bst6I	CTCTTC	3 cut(s)	27, 258, 458
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	124, 184
BstDEI	CTNAG	4 cut(s)	95, 147, 171, 453
BstDSI	CCRYGG	1 cut(s)	302
BstF5I	GGATG	5 cut(s)	170, 219, 332, 355, 391
BstKTI	GATC	2 cut(s)	20, 75
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	2 cut(s)	17, 72
BstMCI	CGRYCG	1 cut(s)	20
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstSFI	CTRYAG	1 cut(s)	613
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	302
BtsCI	GGATG	5 cut(s)	170, 219, 332, 355, 391
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	124, 184
Cfr13I	GGNCC	2 cut(s)	205, 493
Csp6I	GTAC	3 cut(s)	168, 226, 557
CviAII	CATG	3 cut(s)	346, 421, 626
CviJI	RGCY	6 cut(s)	94, 105, 186, 310, 512, 538
CviKI_1	RGCY	6 cut(s)	94, 105, 186, 310, 512, 538
CviQI	GTAC	3 cut(s)	168, 226, 557
DdeI	CTNAG	4 cut(s)	95, 147, 171, 453
DpnI	GATC	2 cut(s)	19, 74
DpnII	GATC	2 cut(s)	17, 72
Eam1104I	CTCTTC	3 cut(s)	27, 258, 458
EarI	CTCTTC	3 cut(s)	27, 258, 458
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	2 cut(s)	205, 493
Eco53kI	GAGCTC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	94
EcoO109I	RGGNCCY	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	3 cut(s)	349, 424, 629
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	3 cut(s)	345, 420, 625
FauNDI	CATATG	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	320
FokI	GGATG	5 cut(s)	177, 226, 339, 362, 398
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	320
GluI	GCNGC	1 cut(s)	320
GsaI	CCCAGC	2 cut(s)	164, 326
Hin1II	CATG	3 cut(s)	349, 424, 629
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	4 cut(s)	98, 150, 174, 252
Hpy188III	TCNNGA	1 cut(s)	506
Hpy8I	GTNNAC	1 cut(s)	604
HpyAV	CCTTC	6 cut(s)	95, 172, 193, 262, 403, 427
HpyCH4III	ACNGT	2 cut(s)	230, 283
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	4 cut(s)	95, 147, 171, 453
Hsp92II	CATG	3 cut(s)	349, 424, 629
Kzo9I	GATC	2 cut(s)	17, 72
LmnI	GCTCC	3 cut(s)	91, 271, 307
MalI	GATC	2 cut(s)	19, 74
MboI	GATC	2 cut(s)	17, 72
MfeI	CAATTG	1 cut(s)	337
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	5 cut(s)	109, 139, 290, 332, 337
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	2 cut(s)	210, 322
MunI	CAATTG	1 cut(s)	337
Mva1269I	GAATGC	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeI	CATATG	1 cut(s)	57
NdeII	GATC	2 cut(s)	17, 72
NlaIII	CATG	3 cut(s)	349, 424, 629
NlaIV	GGNNCC	3 cut(s)	74, 309, 495
NspV	TTCGAA	1 cut(s)	137
OliI	CACNNNNGTG	1 cut(s)	575
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	321
Ple19I	CGATCG	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	1 cut(s)	493
PspFI	CCCAGC	2 cut(s)	160, 322
PspN4I	GGNNCC	3 cut(s)	74, 309, 495
PspPI	GGNCC	2 cut(s)	205, 493
PspPPI	RGGWCCY	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	72
PvuI	CGATCG	1 cut(s)	20
RsaI	GTAC	3 cut(s)	169, 227, 558
RsaNI	GTAC	3 cut(s)	168, 226, 557
RseI	CAYNNNNRTG	1 cut(s)	575
SacI	GAGCTC	1 cut(s)	96
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	2 cut(s)	17, 72
Sau96I	GGNCC	2 cut(s)	205, 493
ScaI	AGTACT	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	5 cut(s)	96, 188, 514, 521, 620
SfcI	CTRYAG	1 cut(s)	613
SfuI	TTCGAA	1 cut(s)	137
SinI	GGWCC	2 cut(s)	205, 493
SmiMI	CAYNNNNRTG	1 cut(s)	575
Sse9I	AATT	5 cut(s)	109, 139, 290, 332, 337
SsiI	CCGC	2 cut(s)	208, 320
SstI	GAGCTC	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	230, 283
TaqI	TCGA	2 cut(s)	16, 137
TasI	AATT	5 cut(s)	109, 139, 290, 332, 337
TatI	WGTACW	3 cut(s)	167, 225, 556
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	1 cut(s)	247
TscAI	CASTG	1 cut(s)	373
TspDTI	ATGAA	7 cut(s)	65, 74, 212, 230, 366, 409, 602
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	205, 493
XapI	RAATTY	4 cut(s)	109, 139, 290, 332
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.