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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 85 |
| AciI | CCGC | 4 cut(s) | 39, 227, 467, 558 |
| AclWI | GGATC | 3 cut(s) | 187, 455, 468 |
| AcoI | YGGCCR | 1 cut(s) | 559 |
| AfaI | GTAC | 4 cut(s) | 86, 618, 634, 677 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 202 |
| AgsI | TTSAA | 4 cut(s) | 35, 298, 433, 440 |
| AluBI | AGCT | 4 cut(s) | 61, 105, 241, 372 |
| AluI | AGCT | 4 cut(s) | 61, 105, 241, 372 |
| AlwI | GGATC | 3 cut(s) | 187, 455, 468 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 52 |
| AoxI | GGCC | 1 cut(s) | 559 |
| ApeKI | GCWGC | 4 cut(s) | 61, 125, 372, 389 |
| AspLEI | GCGC | 1 cut(s) | 152 |
| AspS9I | GGNCC | 1 cut(s) | 350 |
| AsuC2I | CCSGG | 1 cut(s) | 100 |
| AvaII | GGWCC | 1 cut(s) | 350 |
| BamHI | GGATCC | 1 cut(s) | 460 |
| BanII | GRGCYC | 2 cut(s) | 99, 313 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 425, 457 |
| BbsI | GAAGAC | 1 cut(s) | 345 |
| BbvI | GCAGC | 4 cut(s) | 48, 112, 359, 376 |
| BccI | CCATC | 1 cut(s) | 295 |
| BceAI | ACGGC | 2 cut(s) | 26, 431 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 198, 232 |
| BcnI | CCSGG | 1 cut(s) | 100 |
| BfaI | CTAG | 1 cut(s) | 26 |
| BfuAI | ACCTGC | 1 cut(s) | 85 |
| BisI | GCNGC | 6 cut(s) | 62, 126, 373, 390, 468, 559 |
| BlsI | GCNGC | 6 cut(s) | 63, 127, 374, 391, 469, 560 |
| BmcAI | AGTACT | 2 cut(s) | 86, 634 |
| Bme1390I | CCNGG | 1 cut(s) | 100 |
| Bme18I | GGWCC | 1 cut(s) | 350 |
| BmgT120I | GGNCC | 1 cut(s) | 350 |
| BmiI | GGNNCC | 3 cut(s) | 96, 312, 462 |
| BmrFI | CCNGG | 1 cut(s) | 100 |
| BmrI | ACTGGG | 1 cut(s) | 316 |
| BmuI | ACTGGG | 1 cut(s) | 316 |
| BpiI | GAAGAC | 1 cut(s) | 345 |
| BpuEI | CTTGAG | 2 cut(s) | 50, 388 |
| BpuMI | CCSGG | 1 cut(s) | 100 |
| BsaJI | CCNNGG | 3 cut(s) | 98, 165, 198 |
| BsaWI | WCCGGW | 1 cut(s) | 613 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 556, 586 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 202 |
| Bse1I | ACTGG | 2 cut(s) | 311, 630 |
| BseDI | CCNNGG | 3 cut(s) | 98, 165, 198 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BseNI | ACTGG | 2 cut(s) | 311, 630 |
| BseRI | GAGGAG | 1 cut(s) | 107 |
| BseX3I | CGGCCG | 1 cut(s) | 559 |
| BseXI | GCAGC | 4 cut(s) | 48, 112, 359, 376 |
| BseYI | CCCAGC | 1 cut(s) | 137 |
| Bsh1285I | CGRYCG | 1 cut(s) | 562 |
| BshFI | GGCC | 1 cut(s) | 561 |
| BsiEI | CGRYCG | 1 cut(s) | 562 |
| BsiSI | CCGG | 3 cut(s) | 100, 562, 614 |
| BslFI | GGGAC | 1 cut(s) | 154 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 202 |
| BsmFI | GGGAC | 1 cut(s) | 154 |
| BsmI | GAATGC | 1 cut(s) | 664 |
| BsnI | GGCC | 1 cut(s) | 561 |
| Bsp1286I | GDGCHC | 2 cut(s) | 99, 313 |
| Bsp143I | GATC | 4 cut(s) | 192, 424, 460, 538 |
| Bsp19I | CCATGG | 1 cut(s) | 165 |
| BspACI | CCGC | 4 cut(s) | 39, 227, 467, 558 |
| BspANI | GGCC | 1 cut(s) | 561 |
| BspHI | TCATGA | 1 cut(s) | 691 |
| BspLI | GGNNCC | 3 cut(s) | 96, 312, 462 |
| BspMI | ACCTGC | 1 cut(s) | 85 |
| BspPI | GGATC | 3 cut(s) | 187, 455, 468 |
| BsrI | ACTGG | 2 cut(s) | 311, 630 |
| BssECI | CCNNGG | 3 cut(s) | 98, 165, 198 |
| BssMI | GATC | 4 cut(s) | 192, 424, 460, 538 |
| BssT1I | CCWWGG | 1 cut(s) | 165 |
| Bst6I | CTCTTC | 1 cut(s) | 284 |
| BstC8I | GCNNGC | 1 cut(s) | 377 |
| BstDEI | CTNAG | 2 cut(s) | 106, 361 |
| BstDSI | CCRYGG | 2 cut(s) | 165, 198 |
| BstHHI | GCGC | 1 cut(s) | 152 |
| BstKTI | GATC | 4 cut(s) | 195, 427, 463, 541 |
| BstMBI | GATC | 4 cut(s) | 192, 424, 460, 538 |
| BstMCI | CGRYCG | 1 cut(s) | 562 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 61, 67, 134 |
| BstSCI | CCNGG | 1 cut(s) | 98 |
| BstV1I | GCAGC | 4 cut(s) | 48, 112, 359, 376 |
| BstV2I | GAAGAC | 1 cut(s) | 345 |
| BstX2I | RGATCY | 1 cut(s) | 460 |
| BstYI | RGATCY | 1 cut(s) | 460 |
| BstZI | CGGCCG | 1 cut(s) | 559 |
| BsuRI | GGCC | 1 cut(s) | 561 |
| BtgI | CCRYGG | 2 cut(s) | 165, 198 |
| BtsI | GCAGTG | 2 cut(s) | 50, 684 |
| BtsIMutI | CAGTG | 3 cut(s) | 50, 623, 684 |
| BveI | ACCTGC | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 1 cut(s) | 377 |
| CaiI | CAGNNNCTG | 1 cut(s) | 52 |
| CciI | TCATGA | 1 cut(s) | 691 |
| CfoI | GCGC | 1 cut(s) | 152 |
| Cfr13I | GGNCC | 1 cut(s) | 350 |
| Csp6I | GTAC | 4 cut(s) | 85, 617, 633, 676 |
| CviAII | CATG | 2 cut(s) | 166, 692 |
| CviQI | GTAC | 4 cut(s) | 85, 617, 633, 676 |
| DdeI | CTNAG | 2 cut(s) | 106, 361 |
| DpnI | GATC | 4 cut(s) | 194, 426, 462, 540 |
| DpnII | GATC | 4 cut(s) | 192, 424, 460, 538 |
| EaeI | YGGCCR | 1 cut(s) | 559 |
| EagI | CGGCCG | 1 cut(s) | 559 |
| Eam1104I | CTCTTC | 1 cut(s) | 284 |
| EarI | CTCTTC | 1 cut(s) | 284 |
| EciI | GGCGGA | 1 cut(s) | 216 |
| EclXI | CGGCCG | 1 cut(s) | 559 |
| Eco130I | CCWWGG | 1 cut(s) | 165 |
| Eco24I | GRGCYC | 2 cut(s) | 99, 313 |
| Eco47I | GGWCC | 1 cut(s) | 350 |
| Eco52I | CGGCCG | 1 cut(s) | 559 |
| EcoO109I | RGGNCCY | 1 cut(s) | 350 |
| EcoT14I | CCWWGG | 1 cut(s) | 165 |
| EcoT22I | ATGCAT | 1 cut(s) | 664 |
| EcoT38I | GRGCYC | 2 cut(s) | 99, 313 |
| ErhI | CCWWGG | 1 cut(s) | 165 |
| FaeI | CATG | 2 cut(s) | 169, 695 |
| FaiI | YATR | 7 cut(s) | 118, 167, 318, 584, 644, 681, 693 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 113, 145 |
| FaqI | GGGAC | 1 cut(s) | 154 |
| FatI | CATG | 2 cut(s) | 165, 691 |
| Fnu4HI | GCNGC | 6 cut(s) | 62, 126, 373, 390, 468, 559 |
| FriOI | GRGCYC | 2 cut(s) | 99, 313 |
| Fsp4HI | GCNGC | 6 cut(s) | 62, 126, 373, 390, 468, 559 |
| FspBI | CTAG | 1 cut(s) | 26 |
| GlaI | GCGC | 1 cut(s) | 151 |
| GluI | GCNGC | 6 cut(s) | 62, 126, 373, 390, 468, 559 |
| GsaI | CCCAGC | 1 cut(s) | 141 |
| HaeIII | GGCC | 1 cut(s) | 561 |
| HapII | CCGG | 3 cut(s) | 100, 562, 614 |
| HhaI | GCGC | 1 cut(s) | 152 |
| Hin1II | CATG | 2 cut(s) | 169, 695 |
| Hin6I | GCGC | 1 cut(s) | 150 |
| HinP1I | GCGC | 1 cut(s) | 150 |
| HincII | GTYRAC | 1 cut(s) | 670 |
| HindII | GTYRAC | 1 cut(s) | 670 |
| HinfI | GANTC | 1 cut(s) | 221 |
| HpaII | CCGG | 3 cut(s) | 100, 562, 614 |
| Hpy166II | GTNNAC | 1 cut(s) | 670 |
| Hpy188I | TCNGA | 3 cut(s) | 220, 285, 649 |
| Hpy188III | TCNNGA | 4 cut(s) | 353, 367, 638, 692 |
| Hpy8I | GTNNAC | 1 cut(s) | 670 |
| HpyAV | CCTTC | 5 cut(s) | 115, 341, 378, 499, 548 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 375, 662 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 61, 67, 134 |
| HpyF3I | CTNAG | 2 cut(s) | 106, 361 |
| Hsp92II | CATG | 2 cut(s) | 169, 695 |
| HspAI | GCGC | 1 cut(s) | 150 |
| Kzo9I | GATC | 4 cut(s) | 192, 424, 460, 538 |
| LmnI | GCTCC | 3 cut(s) | 94, 102, 316 |
| Lsp1109I | GCAGC | 4 cut(s) | 48, 112, 359, 376 |
| MaeI | CTAG | 1 cut(s) | 26 |
| MalI | GATC | 4 cut(s) | 194, 426, 462, 540 |
| MboI | GATC | 4 cut(s) | 192, 424, 460, 538 |
| MflI | RGATCY | 1 cut(s) | 460 |
| MhlI | GDGCHC | 2 cut(s) | 99, 313 |
| MluCI | AATT | 1 cut(s) | 279 |
| MnlI | CCTC | 7 cut(s) | 12, 22, 85, 103, 253, 544, 588 |
| Mph1103I | ATGCAT | 1 cut(s) | 664 |
| MseI | TTAA | 2 cut(s) | 171, 654 |
| MslI | CAYNNNNRTG | 1 cut(s) | 405 |
| MspA1I | CMGCKG | 1 cut(s) | 467 |
| MspI | CCGG | 3 cut(s) | 100, 562, 614 |
| MspR9I | CCNGG | 1 cut(s) | 100 |
| Mva1269I | GAATGC | 1 cut(s) | 664 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 61, 67, 134 |
| NciI | CCSGG | 1 cut(s) | 100 |
| NcoI | CCATGG | 1 cut(s) | 165 |
| NdeII | GATC | 4 cut(s) | 192, 424, 460, 538 |
| NlaIII | CATG | 2 cut(s) | 169, 695 |
| NlaIV | GGNNCC | 3 cut(s) | 96, 312, 462 |
| NmeAIII | GCCGAG | 1 cut(s) | 106 |
| NsiI | ATGCAT | 1 cut(s) | 664 |
| PagI | TCATGA | 1 cut(s) | 691 |
| PctI | GAATGC | 1 cut(s) | 664 |
| PfeI | GAWTC | 1 cut(s) | 221 |
| PkrI | GCNGC | 6 cut(s) | 63, 127, 374, 391, 469, 560 |
| PpuMI | RGGWCCY | 1 cut(s) | 350 |
| Psp5II | RGGWCCY | 1 cut(s) | 350 |
| PspFI | CCCAGC | 1 cut(s) | 137 |
| PspN4I | GGNNCC | 3 cut(s) | 96, 312, 462 |
| PspPI | GGNCC | 1 cut(s) | 350 |
| PspPPI | RGGWCCY | 1 cut(s) | 350 |
| PstNI | CAGNNNCTG | 1 cut(s) | 52 |
| PsuI | RGATCY | 1 cut(s) | 460 |
| RsaI | GTAC | 4 cut(s) | 86, 618, 634, 677 |
| RsaNI | GTAC | 4 cut(s) | 85, 617, 633, 676 |
| RseI | CAYNNNNRTG | 1 cut(s) | 405 |
| SaqAI | TTAA | 2 cut(s) | 171, 654 |
| SatI | GCNGC | 6 cut(s) | 62, 126, 373, 390, 468, 559 |
| Sau3AI | GATC | 4 cut(s) | 192, 424, 460, 538 |
| Sau96I | GGNCC | 1 cut(s) | 350 |
| ScaI | AGTACT | 2 cut(s) | 86, 634 |
| ScrFI | CCNGG | 1 cut(s) | 100 |
| SduI | GDGCHC | 2 cut(s) | 99, 313 |
| SetI | ASST | 9 cut(s) | 33, 63, 79, 107, 243, 352, 374, 510, 677 |
| SinI | GGWCC | 1 cut(s) | 350 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 405 |
| SmlI | CTYRAG | 2 cut(s) | 65, 367 |
| SmoI | CTYRAG | 2 cut(s) | 65, 367 |
| Sse9I | AATT | 1 cut(s) | 279 |
| SsiI | CCGC | 4 cut(s) | 39, 227, 467, 558 |
| SspI | AATATT | 1 cut(s) | 535 |
| SspMI | CTAG | 1 cut(s) | 26 |
| StyD4I | CCNGG | 1 cut(s) | 98 |
| StyI | CCWWGG | 1 cut(s) | 165 |
| TasI | AATT | 1 cut(s) | 279 |
| TatI | WGTACW | 2 cut(s) | 84, 632 |
| TauI | GCSGC | 2 cut(s) | 470, 561 |
| TfiI | GAWTC | 1 cut(s) | 221 |
| Tru1I | TTAA | 2 cut(s) | 171, 654 |
| Tru9I | TTAA | 2 cut(s) | 171, 654 |
| TscAI | CASTG | 3 cut(s) | 57, 630, 691 |
| TseI | GCWGC | 4 cut(s) | 61, 125, 372, 389 |
| TspDTI | ATGAA | 3 cut(s) | 302, 507, 602 |
| TspGWI | ACGGA | 1 cut(s) | 303 |
| TspRI | CASTG | 3 cut(s) | 57, 630, 691 |
| VpaK11BI | GGWCC | 1 cut(s) | 350 |
| XspI | CTAG | 1 cut(s) | 26 |
| ZrmI | AGTACT | 2 cut(s) | 86, 634 |
| Zsp2I | ATGCAT | 1 cut(s) | 664 |