pycom15g07800

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
4819077 .. 4820471
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g07800.2

Sequence Viewer

Length: 801 bp
ATGCTAGTTTTCACCATTAGACACGAGGCGGACTTCGCGTGGCAAAGGTTCTCACTTTTGCCTGATAAGGAGCCCCCTGCTGTGATTTTGCTTCCAATTTTCAAAAAACCCAGATTGTGTTGGAATTTTCAGTCCTCGAAGCGACAAAACCCTTTTCGGAATACAATGGCGAGAGGAGCTAAGAGGAAGGCCAGCCAGAGAGAAGAAAACAAGGAAAATTCAACCAAGGCAGACAACCACAAAGAACAATCCAGCAAGGCCGCCACTCGGTCAAAGCGGGTCAAGGCATCGCACCCCCAATCTGAGCCCGAGTACTTTGAGGAGCCTCGTCAGTTGGAAGATCTCTGGAAGGCTGCCTTTCCTGTTGGAACAGAGTGGGATCACTTGGACAAGGTGTACCAATTCAAGTGGGATTTCTCAAACCTTGAAAAAGCATTTGAAGAGGGGGGCAAGCTGCACGATCTTGGGAACAACAAAGTGTATCTCTTTGGTGGTACAGAGCCTCAACAAGTCCCCTATAAGGGTGATTTGAAAATTATTTACATACCTATTGTGGTGGCTGTTGTATCGCCTTGCCCACCTTCTGACAAAATTGGGATTAAGTCGGTTCAGAGAGAGACTGAAGAAATTGTTCCAATGAAACAGATGAAAATGGATTGGATTCCTTATATTCCTTATGACAAGAGAGACAGCCAAGTTGTTGAATATAGTCGAAATTCTCCTCAAATATTCGTGCTGGGATGCACTCAGAGACGGGCTTCCTTGAAACACATGAAGATTGATCGATCTAAAGAAATTTGA

Protein Analysis

267

Amino Acids

31.04

Weight (kDa)

9.37

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 38
AciI CCGC 3 cut(s) 29, 261, 277
AclWI GGATC 1 cut(s) 387
AcsI RAATTY 4 cut(s) 124, 217, 715, 795
AcuI CTGAAG 1 cut(s) 642
AfaI GTAC 3 cut(s) 314, 398, 496
AfiI CCNNNNNNNGG 3 cut(s) 267, 520, 521
AgsI TTSAA 8 cut(s) 103, 222, 406, 428, 440, 532, 704, 766
AluBI AGCT 2 cut(s) 179, 454
AluI AGCT 2 cut(s) 179, 454
Alw26I GTCTC 3 cut(s) 611, 681, 745
AlwI GGATC 1 cut(s) 387
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 2 cut(s) 189, 258
ApeKI GCWGC 2 cut(s) 353, 454
ApoI RAATTY 4 cut(s) 124, 217, 715, 795
Asp700I GAANNNNTTC 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 4, 536
AvaI CYCGRG 1 cut(s) 308
BanII GRGCYC 2 cut(s) 75, 309
BauI CACGAG 1 cut(s) 23
BbvI GCAGC 2 cut(s) 340, 441
BcoDI GTCTC 3 cut(s) 611, 681, 745
BfaI CTAG 1 cut(s) 5
BglII AGATCT 1 cut(s) 340
BisI GCNGC 3 cut(s) 261, 354, 455
BlsI GCNGC 3 cut(s) 262, 355, 456
BmcAI AGTACT 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 72, 324
BmsI GCATC 2 cut(s) 296, 731
Bsa29I ATCGAT 1 cut(s) 784
BsaJI CCNNGG 1 cut(s) 225
Bsc4I CCNNNNNNNGG 3 cut(s) 267, 520, 521
BseCI ATCGAT 1 cut(s) 784
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 746
BseLI CCNNNNNNNGG 3 cut(s) 267, 520, 521
BseMII CTCAG 2 cut(s) 294, 761
BseRI GAGGAG 3 cut(s) 189, 335, 711
BseXI GCAGC 2 cut(s) 340, 441
BseYI CCCAGC 1 cut(s) 736
BsgI GTGCAG 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 2 cut(s) 191, 260
BshVI ATCGAT 1 cut(s) 784
BsiHKCI CYCGRG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 497
BslI CCNNNNNNNGG 3 cut(s) 267, 520, 521
BsmAI GTCTC 3 cut(s) 611, 681, 745
BsmBI CGTCTC 1 cut(s) 745
BsmFI GGGAC 1 cut(s) 497
BsnI GGCC 2 cut(s) 191, 260
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 2 cut(s) 75, 309
Bsp143I GATC 5 cut(s) 340, 379, 460, 781, 785
BspACI CCGC 3 cut(s) 29, 261, 277
BspANI GGCC 2 cut(s) 191, 260
BspCNI CTCAG 2 cut(s) 295, 760
BspDI ATCGAT 1 cut(s) 784
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 72, 324
BspPI GGATC 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 5 cut(s) 340, 379, 460, 781, 785
BssSI CACGAG 1 cut(s) 23
BssT1I CCWWGG 1 cut(s) 225
Bst2BI CACGAG 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 435
BstC8I GCNNGC 2 cut(s) 193, 452
BstDEI CTNAG 3 cut(s) 180, 303, 747
BstF5I GGATG 1 cut(s) 746
BstFNI CGCG 1 cut(s) 38
BstKTI GATC 5 cut(s) 343, 382, 463, 784, 788
BstMAI GTCTC 3 cut(s) 611, 681, 745
BstMBI GATC 5 cut(s) 340, 379, 460, 781, 785
BstMWI GCNNNNNNNGC 2 cut(s) 35, 176
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 340, 441
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
Bsu15I ATCGAT 1 cut(s) 784
BsuRI GGCC 2 cut(s) 191, 260
BsuTUI ATCGAT 1 cut(s) 784
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 1 cut(s) 746
Cac8I GCNNGC 2 cut(s) 193, 452
ClaI ATCGAT 1 cut(s) 784
Csp6I GTAC 3 cut(s) 313, 397, 495
CspCI CAANNNNNGTGG 2 cut(s) 389, 424
CviAII CATG 1 cut(s) 772
CviQI GTAC 3 cut(s) 313, 397, 495
DdeI CTNAG 3 cut(s) 180, 303, 747
DpnI GATC 5 cut(s) 342, 381, 462, 783, 787
DpnII GATC 5 cut(s) 340, 379, 460, 781, 785
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 2 cut(s) 75, 309
Eco57I CTGAAG 1 cut(s) 642
Eco88I CYCGRG 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 2 cut(s) 75, 309
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 745
FaeI CATG 1 cut(s) 775
FaiI YATR 6 cut(s) 519, 545, 669, 678, 708, 773
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 1 cut(s) 497
FatI CATG 1 cut(s) 771
FauI CCCGC 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 261, 354, 455
FokI GGATG 1 cut(s) 753
FriOI GRGCYC 2 cut(s) 75, 309
Fsp4HI GCNGC 3 cut(s) 261, 354, 455
FspBI CTAG 1 cut(s) 5
GluI GCNGC 3 cut(s) 261, 354, 455
GsaI CCCAGC 1 cut(s) 740
HaeIII GGCC 2 cut(s) 191, 260
Hin1II CATG 1 cut(s) 775
HinfI GANTC 1 cut(s) 661
HphI GGTGA 2 cut(s) 4, 536
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 5 cut(s) 159, 304, 586, 612, 750
Hpy188III TCNNGA 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 3 cut(s) 181, 343, 591
HpyCH4V TGCA 2 cut(s) 457, 744
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 176
HpyF3I CTNAG 3 cut(s) 180, 303, 747
Hsp92II CATG 1 cut(s) 775
Kzo9I GATC 5 cut(s) 340, 379, 460, 781, 785
LmnI GCTCC 3 cut(s) 70, 176, 322
LpnPI CCDG 9 cut(s) 75, 90, 124, 205, 209, 265, 331, 375, 722
Lsp1109I GCAGC 2 cut(s) 340, 441
LweI GCATC 2 cut(s) 296, 731
MaeI CTAG 1 cut(s) 5
MalI GATC 5 cut(s) 342, 381, 462, 783, 787
MboI GATC 5 cut(s) 340, 379, 460, 781, 785
MboII GAAGA 5 cut(s) 215, 350, 452, 635, 787
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 75, 309
MluCI AATT 9 cut(s) 96, 124, 217, 401, 534, 591, 627, 715, 795
MmeI TCCRAC 3 cut(s) 101, 315, 346
MnlI CCTC 9 cut(s) 19, 145, 167, 177, 313, 336, 436, 513, 732
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 1 cut(s) 600
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 35, 176
NdeII GATC 5 cut(s) 340, 379, 460, 781, 785
NlaIII CATG 1 cut(s) 775
NlaIV GGNNCC 2 cut(s) 72, 324
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 661
PkrI GCNGC 3 cut(s) 262, 355, 456
PspFI CCCAGC 1 cut(s) 736
PspN4I GGNNCC 2 cut(s) 72, 324
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 3 cut(s) 314, 398, 496
RsaNI GTAC 3 cut(s) 313, 397, 495
SaqAI TTAA 1 cut(s) 600
SatI GCNGC 3 cut(s) 261, 354, 455
Sau3AI GATC 5 cut(s) 340, 379, 460, 781, 785
ScaI AGTACT 1 cut(s) 314
SduI GDGCHC 2 cut(s) 75, 309
SetI ASST 7 cut(s) 50, 181, 396, 426, 456, 550, 583
SfaNI GCATC 2 cut(s) 296, 731
Sse9I AATT 9 cut(s) 96, 124, 217, 401, 534, 591, 627, 715, 795
SsiI CCGC 3 cut(s) 29, 261, 277
SspI AATATT 1 cut(s) 729
SspMI CTAG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 3 cut(s) 137, 712, 784
TaqII GACCGA 1 cut(s) 258
TasI AATT 9 cut(s) 96, 124, 217, 401, 534, 591, 627, 715, 795
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 1 cut(s) 661
Tru1I TTAA 1 cut(s) 600
Tru9I TTAA 1 cut(s) 600
TseI GCWGC 2 cut(s) 353, 454
TspDTI ATGAA 3 cut(s) 653, 662, 788
XapI RAATTY 4 cut(s) 124, 217, 715, 795
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 1 cut(s) 5
ZrmI AGTACT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.