Rmu_sc0004924.1_g000025

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004924.1
OG0000661
Physical Location & Seq
Forward (+)
110605 .. 114255
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004924.1_g000025.1.cds

Sequence Viewer

Length: 900 bp
atgaagagaaaggcgctgagggaactagaggttgaaatcgctattcagccactgcaaaatcggctcaagccccaacctgccgagtacttggaggagcctcggagcctagagggtctatggaaggctgcatttcctgctgggacaccgaggtctgttttggactctccactctaccattctttcgagtgggatttctcgaatcttaaaggagcacttgaagaagggggaaagctgtacaagaagagcaacatagtctatctatttggcgcaacagaagagaccatggttaaaagagaagtggtggcggccattatttcgcctttcccgccttcaaatgagcttggacttatagagagtgagggtggactggaagagataattttgatgaagaggttgaagatggtctgggctccgtatgttcccttggacaagagagtagacaaagaaggtcttgacaactttgtcttgagctgcacgcagagaagggcggctcttaaactcaaaaatgtcaagggaaggcgtgatctagtgaagtatgaatacgcggcccactatgggctcaggccgggccaatctgccaatattcctaggcccaacccggccggttattctaacgtgctcgggtcgtgccgggccactaacgggcttgggccatgccggacctcttttaagcgtgctgggcccgtgccgtgctcgtgcttagcggcccgtttgccacctctatttagaactaatgatgatgagttggaggagttgtacttcagtggtgatgatgagaatgaggtgagagaagaagatgatgaaaagattgtgaaggtggaaggagaagcaagggagagaatattaatcttcgagttagggggtggccggagaagaagtgtacatggagaatataattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

33.68

Weight (kDa)

6.87

Isoelectric Point (pI)

60.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 148, 461
Acc36I ACCTGC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 438
AccII CGCG 1 cut(s) 545
AciI CCGC 5 cut(s) 305, 326, 488, 545, 704
AcoI YGGCCR 3 cut(s) 306, 600, 865
AcuI CTGAAG 1 cut(s) 745
AfaI GTAC 4 cut(s) 86, 236, 758, 882
AfiI CCNNNNNNNGG 2 cut(s) 555, 642
AgsI TTSAA 4 cut(s) 35, 218, 333, 397
AluBI AGCT 3 cut(s) 232, 340, 471
AluI AGCT 3 cut(s) 232, 340, 471
Alw21I GWGCWC 3 cut(s) 214, 621, 695
Alw26I GTCTC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 620
ApaI GGGCCC 1 cut(s) 684
ApeKI GCWGC 2 cut(s) 125, 471
AseI ATTAAT 1 cut(s) 845
AspA2I CCTAGG 1 cut(s) 587
AspLEI GCGC 2 cut(s) 16, 269
AspS9I GGNCC 9 cut(s) 547, 568, 591, 633, 650, 660, 680, 681, 706
AsuC2I CCSGG 3 cut(s) 567, 599, 632
AsuHPI GGTGA 2 cut(s) 779, 796
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 1 cut(s) 660
AvrII CCTAGG 1 cut(s) 587
BaeGI GKGCMC 1 cut(s) 684
BanII GRGCYC 3 cut(s) 412, 561, 684
BarI GAAGNNNNNNTAC 2 cut(s) 524, 556
BauI CACGAG 1 cut(s) 694
Bbv12I GWGCWC 3 cut(s) 214, 621, 695
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 2 cut(s) 112, 458
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 673
BcnI CCSGG 3 cut(s) 567, 599, 632
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 4 cut(s) 26, 107, 527, 588
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 6 cut(s) 126, 306, 472, 489, 546, 705
BlnI CCTAGG 1 cut(s) 587
BlpI GCTNAGC 1 cut(s) 700
BlsI GCNGC 6 cut(s) 127, 307, 473, 490, 547, 706
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 3 cut(s) 567, 599, 632
Bme18I GGWCC 1 cut(s) 660
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 9 cut(s) 547, 568, 591, 633, 650, 660, 680, 681, 706
BmiI GGNNCC 4 cut(s) 96, 104, 411, 682
BmrFI CCNGG 3 cut(s) 567, 599, 632
Bpu10I CCTNAGC 2 cut(s) 17, 560
Bpu1102I GCTNAGC 1 cut(s) 700
BpuEI CTTGAG 2 cut(s) 50, 487
BpuMI CCSGG 3 cut(s) 567, 599, 632
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 5 cut(s) 98, 146, 282, 423, 587
BsaXI ACNNNNNCTCC 4 cut(s) 740, 770, 862, 892
Bsc4I CCNNNNNNNGG 2 cut(s) 555, 642
Bse118I RCCGGY 1 cut(s) 602
Bse1I ACTGG 1 cut(s) 372
BseDI CCNNGG 5 cut(s) 98, 146, 282, 423, 587
BseLI CCNNNNNNNGG 2 cut(s) 555, 642
BseMII CTCAG 2 cut(s) 8, 574
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 2 cut(s) 107, 764
BseSI GKGCMC 1 cut(s) 684
BseX3I CGGCCG 1 cut(s) 600
BseXI GCAGC 2 cut(s) 112, 458
BseYI CCCAGC 2 cut(s) 137, 677
BsgI GTGCAG 1 cut(s) 457
Bsh1236I CGCG 1 cut(s) 545
Bsh1285I CGRYCG 1 cut(s) 603
BsiEI CGRYCG 1 cut(s) 603
BsiHKAI GWGCWC 3 cut(s) 214, 621, 695
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 6 cut(s) 566, 599, 603, 631, 658, 868
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 555, 642
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 620
Bsp120I GGGCCC 1 cut(s) 680
Bsp1286I GDGCHC 6 cut(s) 214, 412, 561, 621, 684, 695
Bsp1407I TGTACA 2 cut(s) 234, 880
Bsp143I GATC 1 cut(s) 523
Bsp1720I GCTNAGC 1 cut(s) 700
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 5 cut(s) 305, 326, 488, 545, 704
BspCNI CTCAG 2 cut(s) 9, 573
BspFNI CGCG 1 cut(s) 545
BspLI GGNNCC 4 cut(s) 96, 104, 411, 682
BspMI ACCTGC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 272
BsrFI RCCGGY 1 cut(s) 602
BsrGI TGTACA 2 cut(s) 234, 880
BsrI ACTGG 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 602
BssECI CCNNGG 5 cut(s) 98, 146, 282, 423, 587
BssMI GATC 1 cut(s) 523
BssSI CACGAG 1 cut(s) 694
BssT1I CCWWGG 3 cut(s) 282, 423, 587
Bst2BI CACGAG 1 cut(s) 694
Bst6I CTCTTC 4 cut(s) 236, 270, 366, 383
BstAPI GCANNNNNTGC 1 cut(s) 134
BstAUI TGTACA 2 cut(s) 234, 880
BstC8I GCNNGC 2 cut(s) 476, 675
BstDEI CTNAG 3 cut(s) 17, 560, 700
BstDSI CCRYGG 1 cut(s) 282
BstFNI CGCG 1 cut(s) 545
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 2 cut(s) 16, 269
BstKTI GATC 1 cut(s) 526
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 523
BstMCI CGRYCG 1 cut(s) 603
BstMWI GCNNNNNNNGC 4 cut(s) 61, 134, 325, 679
BstSCI CCNGG 3 cut(s) 565, 597, 630
BstSLI GKGCMC 1 cut(s) 684
BstUI CGCG 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 112, 458
BstZI CGGCCG 1 cut(s) 600
BtgI CCRYGG 1 cut(s) 282
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 2 cut(s) 50, 769
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 476, 675
CaiI CAGNNNCTG 1 cut(s) 52
CfoI GCGC 2 cut(s) 16, 269
Cfr10I RCCGGY 1 cut(s) 602
Cfr13I GGNCC 9 cut(s) 547, 568, 591, 633, 650, 660, 680, 681, 706
Csp6I GTAC 4 cut(s) 85, 235, 757, 881
CviAII CATG 3 cut(s) 283, 654, 884
CviQI GTAC 4 cut(s) 85, 235, 757, 881
DdeI CTNAG 3 cut(s) 17, 560, 700
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
DrdI GACNNNNNNGTC 2 cut(s) 148, 461
DseDI GACNNNNNNGTC 2 cut(s) 148, 461
EaeI YGGCCR 3 cut(s) 306, 600, 865
EagI CGGCCG 1 cut(s) 600
Eam1104I CTCTTC 4 cut(s) 236, 270, 366, 383
EarI CTCTTC 4 cut(s) 236, 270, 366, 383
EclXI CGGCCG 1 cut(s) 600
Eco130I CCWWGG 3 cut(s) 282, 423, 587
Eco24I GRGCYC 3 cut(s) 412, 561, 684
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 1 cut(s) 660
Eco52I CGGCCG 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 745
Eco88I CYCGRG 1 cut(s) 620
EcoT14I CCWWGG 3 cut(s) 282, 423, 587
EcoT38I GRGCYC 3 cut(s) 412, 561, 684
ErhI CCWWGG 3 cut(s) 282, 423, 587
FaeI CATG 3 cut(s) 286, 657, 887
FalI AAGNNNNNCTT 4 cut(s) 198, 230, 435, 467
FaqI GGGAC 1 cut(s) 154
FatI CATG 3 cut(s) 282, 653, 883
FauI CCCGC 1 cut(s) 333
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 6 cut(s) 126, 306, 472, 489, 546, 705
FriOI GRGCYC 3 cut(s) 412, 561, 684
Fsp4HI GCNGC 6 cut(s) 126, 306, 472, 489, 546, 705
FspBI CTAG 4 cut(s) 26, 107, 527, 588
GlaI GCGC 2 cut(s) 15, 268
GluI GCNGC 6 cut(s) 126, 306, 472, 489, 546, 705
GsaI CCCAGC 2 cut(s) 141, 681
HaeII RGCGCY 1 cut(s) 17
HapII CCGG 6 cut(s) 566, 599, 603, 631, 658, 868
HhaI GCGC 2 cut(s) 16, 269
Hin1II CATG 3 cut(s) 286, 657, 887
Hin6I GCGC 2 cut(s) 14, 267
HinP1I GCGC 2 cut(s) 14, 267
HinfI GANTC 2 cut(s) 161, 199
HpaII CCGG 6 cut(s) 566, 599, 603, 631, 658, 868
HphI GGTGA 2 cut(s) 779, 796
Hpy166II GTNNAC 3 cut(s) 365, 439, 881
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 3 cut(s) 196, 452, 466
Hpy8I GTNNAC 3 cut(s) 365, 439, 881
HpyAV CCTTC 8 cut(s) 115, 215, 339, 440, 477, 510, 808, 815
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 3 cut(s) 55, 128, 474
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 134, 325, 679
HpyF3I CTNAG 3 cut(s) 17, 560, 700
HpySE526I ACGT 1 cut(s) 615
Hsp92II CATG 3 cut(s) 286, 657, 887
HspAI GCGC 2 cut(s) 14, 267
Kzo9I GATC 1 cut(s) 523
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 4 cut(s) 94, 102, 209, 415
Lsp1109I GCAGC 2 cut(s) 112, 458
MaeI CTAG 4 cut(s) 26, 107, 527, 588
MaeII ACGT 1 cut(s) 615
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MhlI GDGCHC 6 cut(s) 214, 412, 561, 621, 684, 695
MluCI AATT 2 cut(s) 378, 895
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 726
MseI TTAA 6 cut(s) 204, 288, 495, 669, 845, 898
MspI CCGG 6 cut(s) 566, 599, 603, 631, 658, 868
MspR9I CCNGG 3 cut(s) 567, 599, 632
MvnI CGCG 1 cut(s) 545
MwoI GCNNNNNNNGC 4 cut(s) 61, 134, 325, 679
NciI CCSGG 3 cut(s) 567, 599, 632
NcoI CCATGG 1 cut(s) 282
NdeII GATC 1 cut(s) 523
NlaIII CATG 3 cut(s) 286, 657, 887
NlaIV GGNNCC 4 cut(s) 96, 104, 411, 682
NmeAIII GCCGAG 1 cut(s) 106
PciSI GCTCTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 6 cut(s) 127, 307, 473, 490, 547, 706
PleI GAGTC 1 cut(s) 155
PpsI GAGTC 1 cut(s) 155
PshBI ATTAAT 1 cut(s) 845
PspFI CCCAGC 2 cut(s) 137, 677
PspN4I GGNNCC 4 cut(s) 96, 104, 411, 682
PspOMI GGGCCC 1 cut(s) 680
PspPI GGNCC 9 cut(s) 547, 568, 591, 633, 650, 660, 680, 681, 706
PstNI CAGNNNCTG 1 cut(s) 52
RsaI GTAC 4 cut(s) 86, 236, 758, 882
RsaNI GTAC 4 cut(s) 85, 235, 757, 881
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 6 cut(s) 204, 288, 495, 669, 845, 898
SatI GCNGC 6 cut(s) 126, 306, 472, 489, 546, 705
Sau3AI GATC 1 cut(s) 523
Sau96I GGNCC 9 cut(s) 547, 568, 591, 633, 650, 660, 680, 681, 706
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 3 cut(s) 567, 599, 632
SduI GDGCHC 6 cut(s) 214, 412, 561, 621, 684, 695
SinI GGWCC 1 cut(s) 660
SmlI CTYRAG 2 cut(s) 65, 466
SmoI CTYRAG 2 cut(s) 65, 466
Sse9I AATT 2 cut(s) 378, 895
SsiI CCGC 5 cut(s) 305, 326, 488, 545, 704
SspI AATATT 2 cut(s) 583, 843
SspMI CTAG 4 cut(s) 26, 107, 527, 588
StyD4I CCNGG 3 cut(s) 565, 597, 630
StyI CCWWGG 3 cut(s) 282, 423, 587
TaiI ACGT 1 cut(s) 618
TaqI TCGA 3 cut(s) 183, 197, 852
TasI AATT 2 cut(s) 378, 895
TatI WGTACW 4 cut(s) 84, 234, 756, 880
TauI GCSGC 4 cut(s) 308, 491, 548, 707
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 6 cut(s) 204, 288, 495, 669, 845, 898
Tru9I TTAA 6 cut(s) 204, 288, 495, 669, 845, 898
TscAI CASTG 2 cut(s) 57, 769
TseI GCWGC 2 cut(s) 125, 471
TspDTI ATGAA 4 cut(s) 17, 401, 552, 816
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 2 cut(s) 57, 769
VpaK11BI GGWCC 1 cut(s) 660
VspI ATTAAT 1 cut(s) 845
XmaJI CCTAGG 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 4 cut(s) 26, 107, 527, 588
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.