Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

30140389 .. 30141252

Gene Structure 864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1220200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTTGAAGAAGGAGCAAAGAGAAAGGCAAGCCGGAAACCTGCAGACAGCAGCAAACCTACTCGGCCATTGCAAAAGCGGCTGAAAGCTTCCGAACCCAAATCCAAACCGGAACCCGAGCACTTGGTGGAGGATCCCCGAAAACTGAAAGACCTGTGGAAGACTGCGTTTCCTGTCGGAAAAGGCTGGCACAGGATGGACTCAGTACACAAAGAGTTCAAGTGGGATTTCCTTAATCTCAAACGAGCATTCGAAGAGAATGGAAGGCTCAATCATGAGGTCATTGGTAACGATGGCAACGTATATCTGTTCCGCACAACTGAATGTCATTTGCAGAGGAAGGATGAAGTTGTAGTCCCTGTTTTGGTGGCTGTTGTATCGCCATACCCGCCTTCGGATGAGCTGACGATTAAGCCAGTCGACGGAGCAGAAGTTAGGGTTACAATGAAAGAATTGAACATGGATTGGATTCCATGCATTCCTCTGTACAAGAGAGATTCAGACACCCAAGTGATAAAGTACCCGCAAGTATTTGTCTTGGGTTGCACGGAGAGGAGAAGCGATGCTTTGAAGTGCACGAAGGATGAAAGTTTCGTGAAACTTCCGTACTTCTTTCCGTGTTTGGATGATCACAAGGAGGAAGAAGATGACTGTCGGGCACGAGGAGTGGTGGATGAAGTTGCCAAGTTCATCATAGAGGAGACGATAGAAGGAGATGATGAGTTGCCTCCGATCGTAAAAGCTGGCTTGAAGGAGTATGTGGAGGACAAGCTATTTGAAGCAAAGAGAAAGGGCCGAGAGAACAAAGATAGTAGCAGTAGTGTTTTTTCTTTTGTTCAAGCGAATAGTAGACGGGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

288

Amino Acids

33.06

Weight (kDa)

6.37

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	49
AccI	GTMKAC	2 cut(s)	420, 850
AciI	CCGC	4 cut(s)	79, 313, 389, 524
AclWI	GGATC	2 cut(s)	128, 141
AcoI	YGGCCR	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	4 cut(s)	207, 488, 521, 608
AfiI	CCNNNNNNNGG	3 cut(s)	364, 394, 422
AgsI	TTSAA	7 cut(s)	8, 220, 457, 571, 751, 779, 839
AleI	CACNNNNGTG	1 cut(s)	509
AluBI	AGCT	4 cut(s)	89, 403, 743, 772
AluI	AGCT	4 cut(s)	89, 403, 743, 772
Alw21I	GWGCWC	2 cut(s)	123, 578
Alw26I	GTCTC	1 cut(s)	695
Alw44I	GTGCAC	1 cut(s)	574
AlwI	GGATC	2 cut(s)	128, 141
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	2 cut(s)	65, 793
ApaLI	GTGCAC	1 cut(s)	574
ApeKI	GCWGC	1 cut(s)	51
ArsI	GACNNNNNNTTYG	2 cut(s)	758, 790
AspS9I	GGNCC	1 cut(s)	793
AsuII	TTCGAA	1 cut(s)	252
AvaI	CYCGRG	1 cut(s)	116
BaeGI	GKGCMC	2 cut(s)	578, 661
BamHI	GGATCC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	2 cut(s)	123, 578
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	2 cut(s)	190, 287
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	1 cut(s)	695
BfmI	CTRYAG	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	52, 80
BlsI	GCNGC	2 cut(s)	53, 81
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	2 cut(s)	114, 135
BmsI	GCATC	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 394, 422
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	68
BseGI	GGATG	6 cut(s)	201, 349, 403, 589, 631, 679
BseLI	CCNNNNNNNGG	3 cut(s)	364, 394, 422
BseMI	GCAATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	416
BseRI	GAGGAG	3 cut(s)	568, 678, 713
BseSI	GKGCMC	2 cut(s)	578, 661
BseXI	GCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	735
BshFI	GGCC	2 cut(s)	67, 795
BsiEI	CGRYCG	1 cut(s)	735
BsiHKAI	GWGCWC	2 cut(s)	123, 578
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	34, 110
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	3 cut(s)	364, 394, 422
BsmAI	GTCTC	1 cut(s)	695
BsmBI	CGTCTC	1 cut(s)	695
BsmFI	GGGAC	1 cut(s)	341
BsmI	GAATGC	2 cut(s)	248, 477
BsnI	GGCC	2 cut(s)	67, 795
BsoBI	CYCGRG	1 cut(s)	116
Bsp119I	TTCGAA	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	123, 578, 661
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	133, 628, 732
BspACI	CCGC	4 cut(s)	79, 313, 389, 524
BspANI	GGCC	2 cut(s)	67, 795
BspCNI	CTCAG	1 cut(s)	215
BspHI	TCATGA	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	114, 135
BspMAI	CTGCAG	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	49
BspPI	GGATC	2 cut(s)	128, 141
BspT104I	TTCGAA	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	486
BsrI	ACTGG	1 cut(s)	416
BssMI	GATC	3 cut(s)	133, 628, 732
BssSI	CACGAG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	653
Bst6I	CTCTTC	1 cut(s)	249
BstAUI	TGTACA	1 cut(s)	486
BstBI	TTCGAA	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	31, 188, 745
BstDEI	CTNAG	1 cut(s)	202
BstF5I	GGATG	6 cut(s)	201, 349, 403, 589, 631, 679
BstKTI	GATC	3 cut(s)	136, 631, 735
BstMAI	GTCTC	1 cut(s)	695
BstMBI	GATC	3 cut(s)	133, 628, 732
BstMCI	CGRYCG	1 cut(s)	735
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 388
BstSFI	CTRYAG	1 cut(s)	42
BstSLI	GKGCMC	2 cut(s)	578, 661
BstV1I	GCAGC	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	167
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	67, 795
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	6 cut(s)	201, 349, 403, 589, 631, 679
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	3 cut(s)	31, 188, 745
CciI	TCATGA	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	793
Csp6I	GTAC	4 cut(s)	206, 487, 520, 607
CviAII	CATG	3 cut(s)	275, 460, 474
CviQI	GTAC	4 cut(s)	206, 487, 520, 607
DdeI	CTNAG	1 cut(s)	202
DpnI	GATC	3 cut(s)	135, 630, 734
DpnII	GATC	3 cut(s)	133, 628, 732
DraIII	CACNNNGTG	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	116
EcoT22I	ATGCAT	1 cut(s)	479
Esp3I	CGTCTC	1 cut(s)	695
FaeI	CATG	3 cut(s)	278, 463, 477
FaiI	YATR	7 cut(s)	276, 304, 385, 461, 475, 695, 759
FalI	AAGNNNNNCTT	2 cut(s)	550, 582
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	3 cut(s)	274, 459, 473
FauI	CCCGC	2 cut(s)	396, 531
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	2 cut(s)	420, 850
Fnu4HI	GCNGC	2 cut(s)	52, 80
FokI	GGATG	6 cut(s)	208, 356, 410, 596, 638, 686
Fsp4HI	GCNGC	2 cut(s)	52, 80
GluI	GCNGC	2 cut(s)	52, 80
HaeIII	GGCC	2 cut(s)	67, 795
HapII	CCGG	2 cut(s)	34, 110
Hin1II	CATG	3 cut(s)	278, 463, 477
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	3 cut(s)	200, 469, 497
HpaII	CCGG	2 cut(s)	34, 110
Hpy166II	GTNNAC	4 cut(s)	208, 421, 576, 851
Hpy188I	TCNGA	5 cut(s)	94, 179, 397, 502, 732
Hpy188III	TCNNGA	2 cut(s)	275, 595
Hpy8I	GTNNAC	4 cut(s)	208, 421, 576, 851
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	7 cut(s)	5, 258, 334, 402, 574, 704, 745
HpyCH4III	ACNGT	1 cut(s)	653
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	6 cut(s)	44, 73, 334, 477, 546, 576
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 388
HpyF3I	CTNAG	1 cut(s)	202
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	278, 463, 477
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	3 cut(s)	133, 628, 732
LmnI	GCTCC	2 cut(s)	14, 425
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	1 cut(s)	553
MaeII	ACGT	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	287, 439
MalI	GATC	3 cut(s)	135, 630, 734
MboI	GATC	3 cut(s)	133, 628, 732
MboII	GAAGA	5 cut(s)	20, 172, 266, 653, 656
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	3 cut(s)	123, 578, 661
MluCI	AATT	1 cut(s)	452
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	157
Mph1103I	ATGCAT	1 cut(s)	479
MseI	TTAA	2 cut(s)	234, 411
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	2 cut(s)	34, 110
Mva1269I	GAATGC	2 cut(s)	248, 477
MwoI	GCNNNNNNNGC	2 cut(s)	79, 388
NdeII	GATC	3 cut(s)	133, 628, 732
NlaIII	CATG	3 cut(s)	278, 463, 477
NlaIV	GGNNCC	2 cut(s)	114, 135
NmeAIII	GCCGAG	2 cut(s)	43, 821
NsiI	ATGCAT	1 cut(s)	479
NspV	TTCGAA	1 cut(s)	252
OliI	CACNNNNGTG	1 cut(s)	509
PagI	TCATGA	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PctI	GAATGC	2 cut(s)	248, 477
PfeI	GAWTC	2 cut(s)	469, 497
PkrI	GCNGC	2 cut(s)	53, 81
Ple19I	CGATCG	1 cut(s)	735
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PspN4I	GGNNCC	2 cut(s)	114, 135
PspPI	GGNCC	1 cut(s)	793
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	133
PvuI	CGATCG	1 cut(s)	735
RsaI	GTAC	4 cut(s)	207, 488, 521, 608
RsaNI	GTAC	4 cut(s)	206, 487, 520, 607
RseI	CAYNNNNRTG	1 cut(s)	509
SalI	GTCGAC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	234, 411
SatI	GCNGC	2 cut(s)	52, 80
Sau3AI	GATC	3 cut(s)	133, 628, 732
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	3 cut(s)	123, 578, 661
SetI	ASST	9 cut(s)	43, 61, 91, 156, 282, 303, 405, 745, 774
SfaNI	GCATC	1 cut(s)	553
SfcI	CTRYAG	1 cut(s)	42
SfuI	TTCGAA	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	4 cut(s)	79, 313, 389, 524
TaaI	ACNGT	1 cut(s)	653
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	252, 420
TasI	AATT	1 cut(s)	452
TatI	WGTACW	2 cut(s)	205, 486
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	469, 497
Tru1I	TTAA	2 cut(s)	234, 411
Tru9I	TTAA	2 cut(s)	234, 411
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	5 cut(s)	360, 461, 600, 679, 690
TspGWI	ACGGA	4 cut(s)	438, 563, 594, 606
VneI	GTGCAC	1 cut(s)	574
XmiI	GTMKAC	2 cut(s)	420, 850
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.