Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

5503412 .. 5504470

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGCAAAGTATCCAAGAGAAAAACTCTGCCGGCGGCGACGGAGGAGGCCACCACCAGACGCACCAAGCGCGTCAAGGCCTCTCCGCCGCCTCAGTATGTAGAAGAGCAGCGTAACCTTCAGGATCTATGGAAGGCTGCATTCCTTGTAGGGACCGAGTGGGATCGGCTGGACTCGGTCTACAAATACAACTGGGATTTCAGGAATCTGGAGAAGGAATTTGAAGAGGGCGGGAAGTTTTACGGGATTGGACCCACCAACAAAGTCTATATCTTTGCCGCTACGGAGACTGCGTCGACGGCGCTGCCTGAGTTGCTTCCGACATTGGCTGCGGTCGTGGCTCCTCGGCCGCCGTCGATGGAGATTGCGATCAATGCGGTGCAGAGAGAAGAGGAGATAGTTCCTCTGAAGCACATGAAGATGGATTGGATGCCCTACATTCCTCTGGCCAAGTCGAATTTGCCTCAGATTTTTGTGATGGGATGTACACAGAGAAAGACAAGCTTGAAGCAGATGAAAGTGGAGCGTTTGATGAAGTTTCAATACTGTGTGCCTTATATAATGAATCCGAAGGTCGAAGAGGAGAAGGAGCGTGATGCTGATGTGGAATTTTTCTTCCCACGGGAGCCTCAACCGCCGCTGAATTGTGAATTCAATTGGGAAGTCGATGAAGTTGAGACGTACACTGATAACCTTATTGAGGAAGAGGAGTTGAGTCCGGATGAGAAGGAGGAATTCATGGAGATTTTGAAGGAGGAAGTGAAGAAATCTAAGAGGAAGATGATGGACGCGAGGAAGAAGAGAATGGAGAATCCAAATTATGAGGAAGCTGCAACCTATTATGGGAACAAGAAGCTTTACAAGATCTACCCAGTACAAACACCAGACACTCCTATGATAGAGAATAGGTGTCACTATGTCAACCGCTACTACAGGAATGCCCATGAGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

37.58

Weight (kDa)

5.75

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	180, 296
AccII	CGCG	2 cut(s)	72, 791
AccIII	TCCGGA	1 cut(s)	718
AclWI	GGATC	2 cut(s)	132, 171
AcoI	YGGCCR	2 cut(s)	347, 447
AcsI	RAATTY	5 cut(s)	218, 457, 608, 650, 734
AcuI	CTGAAG	2 cut(s)	104, 428
AfaI	GTAC	3 cut(s)	487, 683, 876
AfiI	CCNNNNNNNGG	2 cut(s)	700, 843
AgsI	TTSAA	5 cut(s)	224, 508, 542, 655, 751
AluBI	AGCT	3 cut(s)	504, 830, 856
AluI	AGCT	3 cut(s)	504, 830, 856
Alw26I	GTCTC	2 cut(s)	281, 671
AlwI	GGATC	2 cut(s)	132, 171
Aor13HI	TCCGGA	1 cut(s)	718
AoxI	GGCC	4 cut(s)	48, 78, 347, 447
ApeKI	GCWGC	5 cut(s)	109, 137, 304, 329, 830
ApoI	RAATTY	5 cut(s)	218, 457, 608, 650, 734
AspLEI	GCGC	2 cut(s)	72, 304
AspS9I	GGNCC	2 cut(s)	153, 251
AvaII	GGWCC	2 cut(s)	153, 251
BalI	TGGCCA	1 cut(s)	449
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
BbvI	GCAGC	5 cut(s)	121, 124, 291, 316, 817
BccI	CCATC	4 cut(s)	352, 415, 472, 778
BceAI	ACGGC	2 cut(s)	315, 337
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BciVI	GTATCC	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	281, 671
BfmI	CTRYAG	1 cut(s)	931
BfoI	RGCGCY	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	22
BglII	AGATCT	1 cut(s)	864
Bme18I	GGWCC	2 cut(s)	153, 251
BmgT120I	GGNCC	2 cut(s)	153, 251
BmiI	GGNNCC	4 cut(s)	154, 253, 342, 627
BmrI	ACTGGG	2 cut(s)	202, 866
BmsI	GCATC	2 cut(s)	420, 586
BmuI	ACTGGG	2 cut(s)	202, 866
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	344, 620
BsaWI	WCCGGW	1 cut(s)	718
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	2 cut(s)	700, 843
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	197, 872
Bse8I	GATNNNNATC	1 cut(s)	368
BseAI	TCCGGA	1 cut(s)	718
BseDI	CCNNGG	2 cut(s)	344, 620
BseGI	GGATG	3 cut(s)	435, 488, 727
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	2 cut(s)	700, 843
BseMII	CTCAG	3 cut(s)	107, 300, 479
BseNI	ACTGG	2 cut(s)	197, 872
BseRI	GAGGAG	5 cut(s)	59, 333, 407, 596, 722
BseX3I	CGGCCG	1 cut(s)	347
BseXI	GCAGC	5 cut(s)	121, 124, 291, 316, 817
BsgI	GTGCAG	1 cut(s)	401
Bsh1236I	CGCG	2 cut(s)	72, 791
Bsh1285I	CGRYCG	2 cut(s)	336, 350
BshFI	GGCC	4 cut(s)	50, 80, 349, 449
BsiEI	CGRYCG	2 cut(s)	336, 350
BsiSI	CCGG	2 cut(s)	32, 719
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	700, 843
BsmAI	GTCTC	2 cut(s)	281, 671
BsmBI	CGTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	166
BsmI	GAATGC	2 cut(s)	140, 943
BsnI	GGCC	4 cut(s)	50, 80, 349, 449
Bsp13I	TCCGGA	1 cut(s)	718
Bsp1407I	TGTACA	1 cut(s)	485
Bsp143I	GATC	4 cut(s)	124, 163, 369, 864
BspANI	GGCC	4 cut(s)	50, 80, 349, 449
BspCNI	CTCAG	3 cut(s)	106, 301, 478
BspEI	TCCGGA	1 cut(s)	718
BspFNI	CGCG	2 cut(s)	72, 791
BspLI	GGNNCC	4 cut(s)	154, 253, 342, 627
BspPI	GGATC	2 cut(s)	132, 171
BspQI	GCTCTTC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	485
BsrI	ACTGG	2 cut(s)	197, 872
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	344, 620
BssMI	GATC	4 cut(s)	124, 163, 369, 864
Bst4CI	ACNGT	1 cut(s)	548
Bst6I	CTCTTC	6 cut(s)	99, 219, 384, 573, 699, 794
BstAUI	TGTACA	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	4 cut(s)	93, 309, 465, 771
BstDSI	CCRYGG	1 cut(s)	620
BstENI	CCTNNNNNAGG	1 cut(s)	698
BstF5I	GGATG	3 cut(s)	435, 488, 727
BstFNI	CGCG	2 cut(s)	72, 791
BstH2I	RGCGCY	1 cut(s)	305
BstHHI	GCGC	2 cut(s)	72, 304
BstKTI	GATC	4 cut(s)	127, 166, 372, 867
BstMAI	GTCTC	2 cut(s)	281, 671
BstMBI	GATC	4 cut(s)	124, 163, 369, 864
BstMCI	CGRYCG	2 cut(s)	336, 350
BstMWI	GCNNNNNNNGC	6 cut(s)	69, 299, 313, 338, 374, 634
BstSFI	CTRYAG	1 cut(s)	931
BstUI	CGCG	2 cut(s)	72, 791
BstV1I	GCAGC	5 cut(s)	121, 124, 291, 316, 817
BstX2I	RGATCY	2 cut(s)	124, 864
BstYI	RGATCY	2 cut(s)	124, 864
BstZI	CGGCCG	1 cut(s)	347
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	4 cut(s)	50, 80, 349, 449
BtgI	CCRYGG	1 cut(s)	620
BtsCI	GGATG	3 cut(s)	435, 488, 727
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	2 cut(s)	72, 304
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	153, 251
CseI	GACGC	4 cut(s)	61, 69, 282, 797
Csp6I	GTAC	3 cut(s)	486, 682, 875
CviAII	CATG	3 cut(s)	415, 739, 944
CviQI	GTAC	3 cut(s)	486, 682, 875
DdeI	CTNAG	4 cut(s)	93, 309, 465, 771
DpnI	GATC	4 cut(s)	126, 165, 371, 866
DpnII	GATC	4 cut(s)	124, 163, 369, 864
EaeI	YGGCCR	2 cut(s)	347, 447
EagI	CGGCCG	1 cut(s)	347
Eam1104I	CTCTTC	6 cut(s)	99, 219, 384, 573, 699, 794
EarI	CTCTTC	6 cut(s)	99, 219, 384, 573, 699, 794
EciI	GGCGGA	1 cut(s)	75
EclXI	CGGCCG	1 cut(s)	347
Eco147I	AGGCCT	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	153, 251
Eco52I	CGGCCG	1 cut(s)	347
Eco57I	CTGAAG	2 cut(s)	104, 428
EcoNI	CCTNNNNNAGG	1 cut(s)	698
EcoRI	GAATTC	2 cut(s)	650, 734
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	3 cut(s)	418, 742, 947
FalI	AAGNNNNNCTT	2 cut(s)	488, 520
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	3 cut(s)	414, 738, 943
FauI	CCCGC	1 cut(s)	224
FblI	GTMKAC	2 cut(s)	180, 296
FokI	GGATG	3 cut(s)	442, 495, 734
GlaI	GCGC	2 cut(s)	71, 303
GsuI	CTGGAG	1 cut(s)	230
HaeII	RGCGCY	1 cut(s)	305
HaeIII	GGCC	4 cut(s)	50, 80, 349, 449
HapII	CCGG	2 cut(s)	32, 719
HgaI	GACGC	4 cut(s)	61, 69, 282, 797
HhaI	GCGC	2 cut(s)	72, 304
Hin1II	CATG	3 cut(s)	418, 742, 947
Hin6I	GCGC	2 cut(s)	70, 302
HinP1I	GCGC	2 cut(s)	70, 302
HincII	GTYRAC	2 cut(s)	297, 922
HindII	GTYRAC	2 cut(s)	297, 922
HindIII	AAGCTT	2 cut(s)	502, 854
HinfI	GANTC	5 cut(s)	173, 205, 565, 715, 811
HpaII	CCGG	2 cut(s)	32, 719
Hpy166II	GTNNAC	5 cut(s)	181, 297, 488, 684, 922
Hpy188I	TCNGA	4 cut(s)	321, 408, 468, 570
Hpy188III	TCNNGA	4 cut(s)	122, 202, 209, 719
Hpy8I	GTNNAC	5 cut(s)	181, 297, 488, 684, 922
Hpy99I	CGWCG	4 cut(s)	43, 298, 301, 358
HpyAV	CCTTC	7 cut(s)	127, 128, 208, 565, 580, 721, 745
HpyCH4III	ACNGT	1 cut(s)	548
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	3 cut(s)	140, 382, 833
HpyF10VI	GCNNNNNNNGC	6 cut(s)	69, 299, 313, 338, 374, 634
HpyF3I	CTNAG	4 cut(s)	93, 309, 465, 771
HpySE526I	ACGT	1 cut(s)	680
Hsp92II	CATG	3 cut(s)	418, 742, 947
HspAI	GCGC	2 cut(s)	70, 302
Kpn2I	TCCGGA	1 cut(s)	718
KroI	GCCGGC	1 cut(s)	31
KroNI	GCCGGC	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	124, 163, 369, 864
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	4 cut(s)	346, 523, 589, 625
Lsp1109I	GCAGC	5 cut(s)	121, 124, 291, 316, 817
LweI	GCATC	2 cut(s)	420, 586
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	2 cut(s)	113, 911
MalI	GATC	4 cut(s)	126, 165, 371, 866
MboI	GATC	4 cut(s)	124, 163, 369, 864
MfeI	CAATTG	1 cut(s)	655
MflI	RGATCY	2 cut(s)	124, 864
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	8 cut(s)	218, 457, 608, 643, 650, 655, 734, 817
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	2 cut(s)	167, 724
MmeI	TCCRAC	1 cut(s)	344
Mox20I	TGGCCA	1 cut(s)	449
MroI	TCCGGA	1 cut(s)	718
MroNI	GCCGGC	1 cut(s)	31
MscI	TGGCCA	1 cut(s)	449
MslI	CAYNNNNRTG	2 cut(s)	419, 893
Msp20I	TGGCCA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	640
MspI	CCGG	2 cut(s)	32, 719
MunI	CAATTG	1 cut(s)	655
Mva1269I	GAATGC	2 cut(s)	140, 943
MvnI	CGCG	2 cut(s)	72, 791
MwoI	GCNNNNNNNGC	6 cut(s)	69, 299, 313, 338, 374, 634
NaeI	GCCGGC	1 cut(s)	33
NdeII	GATC	4 cut(s)	124, 163, 369, 864
NgoMIV	GCCGGC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	418, 742, 947
NlaIV	GGNNCC	4 cut(s)	154, 253, 342, 627
NmeAIII	GCCGAG	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	911
PceI	AGGCCT	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	290
PctI	GAATGC	2 cut(s)	140, 943
PdiI	GCCGGC	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	205, 565, 811
PflFI	GACNNNGTC	2 cut(s)	176, 292
PleI	GAGTC	2 cut(s)	167, 723
PpsI	GAGTC	2 cut(s)	167, 723
PspN4I	GGNNCC	4 cut(s)	154, 253, 342, 627
PspPI	GGNCC	2 cut(s)	153, 251
PsuI	RGATCY	2 cut(s)	124, 864
PsyI	GACNNNGTC	2 cut(s)	176, 292
RsaI	GTAC	3 cut(s)	487, 683, 876
RsaNI	GTAC	3 cut(s)	486, 682, 875
RseI	CAYNNNNRTG	2 cut(s)	419, 893
SalI	GTCGAC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	99
Sau3AI	GATC	4 cut(s)	124, 163, 369, 864
Sau96I	GGNCC	2 cut(s)	153, 251
SchI	GAGTC	2 cut(s)	167, 724
SetI	ASST	9 cut(s)	120, 506, 576, 683, 696, 832, 839, 858, 911
SfaNI	GCATC	2 cut(s)	420, 586
SfcI	CTRYAG	1 cut(s)	931
SgrDI	CGTCGACG	1 cut(s)	295
SinI	GGWCC	2 cut(s)	153, 251
SmiMI	CAYNNNNRTG	2 cut(s)	419, 893
Sse9I	AATT	8 cut(s)	218, 457, 608, 643, 650, 655, 734, 817
SseBI	AGGCCT	1 cut(s)	80
StuI	AGGCCT	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	548
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	5 cut(s)	296, 356, 455, 576, 666
TaqII	GACCGA	2 cut(s)	166, 170
TasI	AATT	8 cut(s)	218, 457, 608, 643, 650, 655, 734, 817
TatI	WGTACW	2 cut(s)	485, 874
TauI	GCSGC	5 cut(s)	38, 91, 281, 352, 640
TfiI	GAWTC	3 cut(s)	205, 565, 811
TscAI	CASTG	1 cut(s)	691
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	5 cut(s)	109, 137, 304, 329, 830
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	6 cut(s)	431, 530, 548, 578, 684, 727
TspGWI	ACGGA	2 cut(s)	56, 299
TspRI	CASTG	1 cut(s)	691
Tth111I	GACNNNGTC	2 cut(s)	176, 292
VpaK11BI	GGWCC	2 cut(s)	153, 251
XagI	CCTNNNNNAGG	1 cut(s)	698
XapI	RAATTY	5 cut(s)	218, 457, 608, 650, 734
XmiI	GTMKAC	2 cut(s)	180, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.