Rmu_sc0015119.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015119.1
Physical Location & Seq
Forward (+)
263 .. 1300
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015119.1_g000001.1.cds

Sequence Viewer

Length: 1038 bp
atgaggaaaggagccaagagaaaggcccggccagcggcggcggcgacggaggaagccgccaccaagcccaaagccaccgccacacgcgccaagcgcgtcaaggcctcgcagccgcagccggaaccggagtacgtagaagagcagcgcaaccttcaagatctatggaaggcggcgtttccggtagggaccgagtgggatcggctggagtcaatctaccaatacgactgggatttctcgaatctcgagaaggagttcgaagaagaaggagggaagtttcatggaatcggggacaacaaagtctacctcttcggccagacggagacctcgtcgccgtcgcagccggtgctgatcccgacgcttgtggccgtcgtggcgcctcggccgccgtcgatggagatagggattcggtccgtccagagagaagataaggagatagtgccgatgaggcagatgaagatggactggatcccttacattcctctggaggagagagaaggctggaattccgaaagggcgaagaagtccgattcgaatttgccgcagatttttgtgctggggtgtactcagaggaaggctgggttgaagcagatgaaggaggagcggtggatgaagttccagtattgtatgccgtatttgatgaacccgaacgaggaggagaaagagcagagcactgtggtggatatactctttccccgcgagccgcaagcaccactgtttgtacaattcgattgggaatttgatgaggtcgaggagtacaccgatgagctgataaaggcggaggagttgagtgaggataagaaggaggcgttcatggagtttgtgagggaggaggtgaagaaagcgaagaagaagattcgagaggagagggaagcgaagaagaagctcatggaggaccctaagtatcaggaggcgaaaatgtactatgagaatatgaggctttataagatttacccggtgcaaacgccgaacactcctgtgatagagatgaagtctaagtatatcaactactactacggaagcgcccatgagattatttga

Protein Analysis

345

Amino Acids

40.67

Weight (kDa)

5.49

Isoelectric Point (pI)

60.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 942
AasI GACNNNNNNGTC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 373
AccBSI CCGCTC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 300
AccII CGCG 3 cut(s) 87, 96, 696
AclWI GGATC 4 cut(s) 204, 343, 460, 473
AcoI YGGCCR 4 cut(s) 29, 310, 363, 380
AcsI RAATTY 3 cut(s) 502, 532, 734
AcyI GRCGYC 1 cut(s) 374
AfaI GTAC 5 cut(s) 131, 562, 720, 755, 920
AfiI CCNNNNNNNGG 2 cut(s) 34, 649
AgsI TTSAA 2 cut(s) 155, 583
AleI CACNNNNGTG 2 cut(s) 674, 974
AluBI AGCT 2 cut(s) 766, 883
AluI AGCT 2 cut(s) 766, 883
Alw21I GWGCWC 1 cut(s) 671
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 4 cut(s) 204, 343, 460, 473
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 6 cut(s) 24, 29, 102, 310, 363, 380
ApeKI GCWGC 4 cut(s) 109, 115, 142, 337
ApoI RAATTY 3 cut(s) 502, 532, 734
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 5 cut(s) 89, 96, 147, 376, 1022
AspS9I GGNCC 4 cut(s) 25, 186, 408, 892
AsuC2I CCSGG 2 cut(s) 28, 953
AsuHPI GGTGA 1 cut(s) 844
AsuII TTCGAA 2 cut(s) 255, 530
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 3 cut(s) 186, 408, 892
BamHI GGATCC 1 cut(s) 465
BanI GGYRCC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 671
BbvI GCAGC 4 cut(s) 121, 127, 154, 349
BccI CCATC 2 cut(s) 385, 451
BceAI ACGGC 4 cut(s) 316, 350, 370, 613
BcnI CCSGG 2 cut(s) 28, 953
BcoDI GTCTC 1 cut(s) 314
BfoI RGCGCY 2 cut(s) 377, 1023
BglI GCCNNNNNGGC 2 cut(s) 371, 445
BglII AGATCT 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 28, 953
Bme18I GGWCC 3 cut(s) 186, 408, 892
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 4 cut(s) 25, 186, 408, 892
BmiI GGNNCC 6 cut(s) 13, 123, 187, 375, 467, 894
BmrFI CCNGG 2 cut(s) 28, 953
BmrI ACTGGG 1 cut(s) 235
BmuI ACTGGG 1 cut(s) 235
BpmI CTGGAG 2 cut(s) 224, 503
Bpu14I TTCGAA 2 cut(s) 255, 530
BpuMI CCSGG 2 cut(s) 28, 953
BsaAI YACGTR 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 377
BsaWI WCCGGW 2 cut(s) 124, 178
BsaXI ACNNNNNCTCC 4 cut(s) 311, 341, 587, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 649
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 3 cut(s) 230, 467, 616
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 612
BseLI CCNNNNNNNGG 2 cut(s) 34, 649
BseMII CTCAG 1 cut(s) 578
BseNI ACTGG 3 cut(s) 230, 467, 616
BseRI GAGGAG 8 cut(s) 500, 611, 665, 668, 764, 794, 842, 875
BseX3I CGGCCG 1 cut(s) 380
BseXI GCAGC 4 cut(s) 121, 127, 154, 349
BseYI CCCAGC 2 cut(s) 553, 575
Bsh1236I CGCG 3 cut(s) 87, 96, 696
Bsh1285I CGRYCG 1 cut(s) 383
BshFI GGCC 6 cut(s) 26, 31, 104, 312, 365, 382
BshNI GGYRCC 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 383
BsiHKAI GWGCWC 1 cut(s) 671
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 6 cut(s) 28, 119, 125, 179, 341, 953
BslFI GGGAC 2 cut(s) 199, 302
BslI CCNNNNNNNGG 2 cut(s) 34, 649
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 2 cut(s) 199, 302
BsnI GGCC 6 cut(s) 26, 31, 104, 312, 365, 382
Bso31I GGTCTC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 242
Bsp119I TTCGAA 2 cut(s) 255, 530
Bsp1286I GDGCHC 1 cut(s) 671
Bsp1407I TGTACA 1 cut(s) 718
Bsp143I GATC 4 cut(s) 157, 196, 348, 465
BspANI GGCC 6 cut(s) 26, 31, 104, 312, 365, 382
BspCNI CTCAG 1 cut(s) 577
BspFNI CGCG 3 cut(s) 87, 96, 696
BspLI GGNNCC 6 cut(s) 13, 123, 187, 375, 467, 894
BspPI GGATC 4 cut(s) 204, 343, 460, 473
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 2 cut(s) 255, 530
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 601
BsrFI RCCGGY 1 cut(s) 340
BsrGI TGTACA 1 cut(s) 718
BsrI ACTGG 3 cut(s) 230, 467, 616
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 4 cut(s) 157, 196, 348, 465
BssNI GRCGYC 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 673, 714
Bst6I CTCTTC 2 cut(s) 132, 311
BstACI GRCGYC 1 cut(s) 374
BstAPI GCANNNNNTGC 1 cut(s) 343
BstAUI TGTACA 1 cut(s) 718
BstBAI YACGTR 1 cut(s) 133
BstBI TTCGAA 2 cut(s) 255, 530
BstC8I GCNNGC 3 cut(s) 33, 698, 705
BstDEI CTNAG 3 cut(s) 564, 897, 993
BstF5I GGATG 1 cut(s) 612
BstFNI CGCG 3 cut(s) 87, 96, 696
BstH2I RGCGCY 2 cut(s) 377, 1023
BstHHI GCGC 5 cut(s) 89, 96, 147, 376, 1022
BstKTI GATC 4 cut(s) 160, 199, 351, 468
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 4 cut(s) 157, 196, 348, 465
BstMCI CGRYCG 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 26, 951
BstSNI TACGTA 1 cut(s) 133
BstUI CGCG 3 cut(s) 87, 96, 696
BstV1I GCAGC 4 cut(s) 121, 127, 154, 349
BstX2I RGATCY 2 cut(s) 157, 465
BstYI RGATCY 2 cut(s) 157, 465
BstZI CGGCCG 1 cut(s) 380
BsuRI GGCC 6 cut(s) 26, 31, 104, 312, 365, 382
BtsCI GGATG 1 cut(s) 612
BtsIMutI CAGTG 2 cut(s) 669, 710
Cac8I GCNNGC 3 cut(s) 33, 698, 705
CfoI GCGC 5 cut(s) 89, 96, 147, 376, 1022
Cfr10I RCCGGY 1 cut(s) 340
Cfr13I GGNCC 4 cut(s) 25, 186, 408, 892
CpoI CGGWCCG 1 cut(s) 408
CseI GACGC 2 cut(s) 85, 364
Csp6I GTAC 5 cut(s) 130, 561, 719, 754, 919
CspI CGGWCCG 1 cut(s) 408
CviAII CATG 4 cut(s) 278, 811, 886, 1025
CviQI GTAC 5 cut(s) 130, 561, 719, 754, 919
DdeI CTNAG 3 cut(s) 564, 897, 993
DinI GGCGCC 1 cut(s) 375
DpnI GATC 4 cut(s) 159, 198, 350, 467
DpnII GATC 4 cut(s) 157, 196, 348, 465
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 4 cut(s) 29, 310, 363, 380
EagI CGGCCG 1 cut(s) 380
Eam1104I CTCTTC 2 cut(s) 132, 311
EarI CTCTTC 2 cut(s) 132, 311
EciI GGCGGA 1 cut(s) 791
EclXI CGGCCG 1 cut(s) 380
Eco105I TACGTA 1 cut(s) 133
Eco147I AGGCCT 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 3 cut(s) 186, 408, 892
Eco52I CGGCCG 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 892
EcoRI GAATTC 1 cut(s) 502
EgeI GGCGCC 1 cut(s) 375
EheI GGCGCC 1 cut(s) 375
FaeI CATG 4 cut(s) 281, 814, 889, 1028
FaqI GGGAC 2 cut(s) 199, 302
FatI CATG 4 cut(s) 277, 810, 885, 1024
FauI CCCGC 1 cut(s) 701
FblI GTMKAC 1 cut(s) 300
FokI GGATG 1 cut(s) 619
GlaI GCGC 5 cut(s) 88, 95, 146, 375, 1021
GsaI CCCAGC 2 cut(s) 557, 579
GsuI CTGGAG 2 cut(s) 224, 503
HaeII RGCGCY 2 cut(s) 377, 1023
HaeIII GGCC 6 cut(s) 26, 31, 104, 312, 365, 382
HapII CCGG 6 cut(s) 28, 119, 125, 179, 341, 953
HgaI GACGC 2 cut(s) 85, 364
HhaI GCGC 5 cut(s) 89, 96, 147, 376, 1022
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 4 cut(s) 281, 814, 889, 1028
Hin6I GCGC 5 cut(s) 87, 94, 145, 374, 1020
HinP1I GCGC 5 cut(s) 87, 94, 145, 374, 1020
HinfI GANTC 6 cut(s) 206, 238, 282, 403, 527, 853
HpaII CCGG 6 cut(s) 28, 119, 125, 179, 341, 953
HphI GGTGA 1 cut(s) 844
Hpy166II GTNNAC 3 cut(s) 301, 561, 756
Hpy188I TCNGA 3 cut(s) 508, 526, 567
Hpy188III TCNNGA 9 cut(s) 155, 235, 242, 244, 352, 415, 482, 857, 905
Hpy8I GTNNAC 3 cut(s) 301, 561, 756
Hpy99I CGWCG 6 cut(s) 49, 331, 337, 358, 371, 391
HpyAV CCTTC 8 cut(s) 160, 161, 241, 257, 488, 565, 586, 793
HpyCH4III ACNGT 2 cut(s) 673, 714
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 958
HpyF3I CTNAG 3 cut(s) 564, 897, 993
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 4 cut(s) 281, 814, 889, 1028
HspAI GCGC 5 cut(s) 87, 94, 145, 374, 1020
KasI GGCGCC 1 cut(s) 373
Kzo9I GATC 4 cut(s) 157, 196, 348, 465
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 11, 598
Lsp1109I GCAGC 4 cut(s) 121, 127, 154, 349
MaeII ACGT 1 cut(s) 132
MalI GATC 4 cut(s) 159, 198, 350, 467
MbiI CCGCTC 1 cut(s) 601
MboI GATC 4 cut(s) 157, 196, 348, 465
MflI RGATCY 2 cut(s) 157, 465
MhlI GDGCHC 1 cut(s) 671
MluCI AATT 4 cut(s) 502, 532, 722, 734
Mly113I GGCGCC 1 cut(s) 374
MlyI GAGTC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 251
MslI CAYNNNNRTG 2 cut(s) 674, 974
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 6 cut(s) 28, 119, 125, 179, 341, 953
MspR9I CCNGG 2 cut(s) 28, 953
MvnI CGCG 3 cut(s) 87, 96, 696
NarI GGCGCC 1 cut(s) 374
NciI CCSGG 2 cut(s) 28, 953
NdeII GATC 4 cut(s) 157, 196, 348, 465
NlaIII CATG 4 cut(s) 281, 814, 889, 1028
NlaIV GGNNCC 6 cut(s) 13, 123, 187, 375, 467, 894
NmeAIII GCCGAG 1 cut(s) 358
NspV TTCGAA 2 cut(s) 255, 530
OliI CACNNNNGTG 2 cut(s) 674, 974
PaeR7I CTCGAG 1 cut(s) 242
PceI AGGCCT 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 5 cut(s) 238, 282, 403, 527, 853
PflFI GACNNNGTC 1 cut(s) 325
PleI GAGTC 1 cut(s) 214
PluTI GGCGCC 1 cut(s) 377
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 892
PsiI TTATAA 1 cut(s) 942
Psp5II RGGWCCY 1 cut(s) 892
PspFI CCCAGC 2 cut(s) 553, 575
PspN4I GGNNCC 6 cut(s) 13, 123, 187, 375, 467, 894
PspPI GGNCC 4 cut(s) 25, 186, 408, 892
PspPPI RGGWCCY 1 cut(s) 892
PsuI RGATCY 2 cut(s) 157, 465
PsyI GACNNNGTC 1 cut(s) 325
RsaI GTAC 5 cut(s) 131, 562, 720, 755, 920
RsaNI GTAC 5 cut(s) 130, 561, 719, 754, 919
RseI CAYNNNNRTG 2 cut(s) 674, 974
Rsr2I CGGWCCG 1 cut(s) 408
RsrII CGGWCCG 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 132
Sau3AI GATC 4 cut(s) 157, 196, 348, 465
Sau96I GGNCC 4 cut(s) 25, 186, 408, 892
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 2 cut(s) 28, 953
SduI GDGCHC 1 cut(s) 671
SetI ASST 8 cut(s) 135, 153, 306, 326, 747, 768, 834, 885
SfoI GGCGCC 1 cut(s) 375
Sfr274I CTCGAG 1 cut(s) 242
SfuI TTCGAA 2 cut(s) 255, 530
SinI GGWCC 3 cut(s) 186, 408, 892
SlaI CTCGAG 1 cut(s) 242
SmiMI CAYNNNNRTG 2 cut(s) 674, 974
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SnaBI TACGTA 1 cut(s) 133
Sse9I AATT 4 cut(s) 502, 532, 722, 734
SseBI AGGCCT 1 cut(s) 104
SspDI GGCGCC 1 cut(s) 373
StuI AGGCCT 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 26, 951
TaaI ACNGT 2 cut(s) 673, 714
TaiI ACGT 1 cut(s) 135
TaqI TCGA 8 cut(s) 236, 243, 255, 389, 530, 726, 747, 856
TaqII GACCGA 2 cut(s) 203, 396
TasI AATT 4 cut(s) 502, 532, 722, 734
TatI WGTACW 4 cut(s) 560, 718, 753, 918
TauI GCSGC 9 cut(s) 38, 41, 44, 59, 115, 173, 385, 541, 703
TfiI GAWTC 5 cut(s) 238, 282, 403, 527, 853
TscAI CASTG 2 cut(s) 676, 717
TseI GCWGC 4 cut(s) 109, 115, 142, 337
TspDTI ATGAA 7 cut(s) 266, 467, 605, 623, 653, 799, 1001
TspGWI ACGGA 4 cut(s) 62, 332, 400, 1029
TspRI CASTG 2 cut(s) 676, 717
Tth111I GACNNNGTC 1 cut(s) 325
VpaK11BI GGWCC 3 cut(s) 186, 408, 892
XapI RAATTY 3 cut(s) 502, 532, 734
XhoI CTCGAG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.