RchiOBHm_Chr3g0451551

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
2579893 .. 2580830
938 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41881

Sequence Viewer

Length: 306 bp
ATGAAGAGATTGAAGATGGACTGGGCTCTGTACGTTCGTTTGGACAAGAGAGTAGACAACGAAGGTCCTGAAATCTTTGTCTTGAGCAGCACGCAAAGAAGGGCTGCTCTCAAACACAAAAATGTCAAGGGAAACGGTGATCTAGCGAAGTTTGAATACGCCGTGCCTTATTTAGATCCGGCGGGGCAAGTAATGTGTCATGAAGGTCACGTTCATGAGGTGGAGGAGAAGTACTTTAGTGCTAATGACGATGAGCTGGAGGAGTTGTACTTCAGTGGTGACGATAATCAAGTACGTAGTAGCTAG

Protein Analysis

101

Amino Acids

11.68

Weight (kDa)

5.3

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 256
AfaI GTAC 4 cut(s) 32, 233, 269, 294
AgsI TTSAA 2 cut(s) 13, 155
AluBI AGCT 2 cut(s) 256, 303
AluI AGCT 2 cut(s) 256, 303
AlwI GGATC 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 87, 104
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 149, 290
AvaII GGWCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 28
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
BbvI GCAGC 2 cut(s) 91, 99
BccI CCATC 1 cut(s) 10
BceAI ACGGC 1 cut(s) 146
BfaI CTAG 2 cut(s) 143, 304
BisI GCNGC 2 cut(s) 88, 105
BlsI GCNGC 2 cut(s) 89, 106
BmcAI AGTACT 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 296
BsaXI ACNNNNNCTCC 4 cut(s) 215, 245, 251, 281
Bse1I ACTGG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 26
BseRI GAGGAG 2 cut(s) 239, 275
BseXI GCAGC 2 cut(s) 91, 99
BsiSI CCGG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 2 cut(s) 139, 175
BspACI CCGC 1 cut(s) 182
BspHI TCATGA 2 cut(s) 199, 214
BspPI GGATC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 26
BssMI GATC 2 cut(s) 139, 175
Bst4CI ACNGT 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 142, 178
BstMBI GATC 2 cut(s) 139, 175
BstSNI TACGTA 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 91, 99
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 92
CciI TCATGA 2 cut(s) 199, 214
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 4 cut(s) 31, 232, 268, 293
CviAII CATG 2 cut(s) 200, 215
CviJI RGCY 4 cut(s) 26, 104, 256, 303
CviKI_1 RGCY 4 cut(s) 26, 104, 256, 303
CviQI GTAC 4 cut(s) 31, 232, 268, 293
DpnI GATC 2 cut(s) 141, 177
DpnII GATC 2 cut(s) 139, 175
Eco105I TACGTA 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 28
FaeI CATG 2 cut(s) 203, 218
FaiI YATR 2 cut(s) 201, 216
FatI CATG 2 cut(s) 199, 214
FauI CCCGC 1 cut(s) 175
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 2 cut(s) 88, 105
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 2 cut(s) 88, 105
FspBI CTAG 2 cut(s) 143, 304
GluI GCNGC 2 cut(s) 88, 105
GsuI CTGGAG 1 cut(s) 278
HapII CCGG 1 cut(s) 179
Hin1II CATG 2 cut(s) 203, 218
HpaII CCGG 1 cut(s) 179
HphI GGTGA 2 cut(s) 149, 290
Hpy166II GTNNAC 1 cut(s) 55
Hpy188III TCNNGA 4 cut(s) 68, 82, 200, 215
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 3 cut(s) 56, 93, 197
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 3 cut(s) 33, 210, 295
HpySE526I ACGT 3 cut(s) 33, 210, 295
Hsp92II CATG 2 cut(s) 203, 218
Kzo9I GATC 2 cut(s) 139, 175
LpnPI CCDG 4 cut(s) 7, 81, 192, 242
Lsp1109I GCAGC 2 cut(s) 91, 99
MaeI CTAG 2 cut(s) 143, 304
MaeII ACGT 3 cut(s) 33, 210, 295
MaeIII GTNAC 2 cut(s) 206, 278
MalI GATC 2 cut(s) 141, 177
MboI GATC 2 cut(s) 139, 175
MboII GAAGA 2 cut(s) 16, 25
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 28
MnlI CCTC 3 cut(s) 211, 217, 253
MslI CAYNNNNRTG 2 cut(s) 120, 213
MspI CCGG 1 cut(s) 179
NdeII GATC 2 cut(s) 139, 175
NlaIII CATG 2 cut(s) 203, 218
NmuCI GTSAC 2 cut(s) 206, 278
PagI TCATGA 2 cut(s) 199, 214
PkrI GCNGC 2 cut(s) 89, 106
Ppu21I YACGTR 1 cut(s) 296
PpuMI RGGWCCY 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 65
PspPI GGNCC 1 cut(s) 65
PspPPI RGGWCCY 1 cut(s) 65
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 4 cut(s) 32, 233, 269, 294
RsaNI GTAC 4 cut(s) 31, 232, 268, 293
RseI CAYNNNNRTG 2 cut(s) 120, 213
SatI GCNGC 2 cut(s) 88, 105
Sau3AI GATC 2 cut(s) 139, 175
Sau96I GGNCC 1 cut(s) 65
ScaI AGTACT 1 cut(s) 233
SduI GDGCHC 1 cut(s) 28
SetI ASST 8 cut(s) 36, 67, 208, 213, 222, 258, 298, 305
SinI GGWCC 1 cut(s) 65
SmiMI CAYNNNNRTG 2 cut(s) 120, 213
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SnaBI TACGTA 1 cut(s) 296
SsiI CCGC 1 cut(s) 182
SspMI CTAG 2 cut(s) 143, 304
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 3 cut(s) 36, 213, 298
TatI WGTACW 2 cut(s) 231, 267
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 2 cut(s) 206, 278
TseI GCWGC 2 cut(s) 87, 104
Tsp45I GTSAC 2 cut(s) 206, 278
TspDTI ATGAA 3 cut(s) 17, 203, 216
TspRI CASTG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 2 cut(s) 143, 304
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.