Rh3DG099300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
7882673 .. 7883729
1057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG099300.1

Sequence Viewer

Length: 444 bp
ATGAAGGAGGACCGCTGGATGAAGTTCCAGTACTGTGTGCCTTATATATTGAATCCGAAATACGAAGAAGAGAAGGAGGAGAATACTGTGGTGGAATTTTTCTTCCCACGGGAGCCTCAACTGCCCCTGGGGTGTGAATTCAATTGGGACATGGATGAAGTTGAGGATTTCACTGATAAACTTATAGAGGATGAGGAGTTCAGTGAGGATAAGAAGGAGGCATTCATGGAGTTTTTGAAGGAGGAAGTAAAGAACGCTAAGAAGAAGAAGAGGGAAGCGAGGAAGAAGAGAATGGAGGACCCAAAGTATCAGGAAGCTAAAACCTATTATGAGAATATGAGGCTTTACAAGATTTACCCAGTACAAACACCAAACACTCCTGTGATAGAGATGAAGTGTCATTATGTCAACTTCTACTACAGGTTTGCCCATGAGATTATTTGA

Protein Analysis

147

Amino Acids

18.32

Weight (kDa)

5.1

Isoelectric Point (pI)

55.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 95, 137
AfaI GTAC 2 cut(s) 32, 363
AgsI TTSAA 3 cut(s) 52, 142, 238
AjnI CCWGG 1 cut(s) 126
AleI CACNNNNGTG 1 cut(s) 380
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
ApoI RAATTY 2 cut(s) 95, 137
AspS9I GGNCC 2 cut(s) 10, 298
AvaII GGWCC 2 cut(s) 10, 298
BarI GAAGNNNNNNTAC 2 cut(s) 14, 46
BciT130I CCWGG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 418
BmcAI AGTACT 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 2 cut(s) 10, 298
BmgT120I GGNCC 2 cut(s) 10, 298
BmiI GGNNCC 2 cut(s) 114, 300
BmrFI CCNGG 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 107, 126, 127
Bse1I ACTGG 2 cut(s) 28, 359
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 3 cut(s) 107, 126, 127
BseGI GGATG 3 cut(s) 24, 160, 196
BseNI ACTGG 2 cut(s) 28, 359
BseRI GAGGAG 2 cut(s) 92, 209
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 221
BspACI CCGC 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 114, 300
BsrI ACTGG 2 cut(s) 28, 359
BssECI CCNNGG 3 cut(s) 107, 126, 127
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 2 cut(s) 35, 88
Bst6I CTCTTC 3 cut(s) 63, 263, 281
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 3 cut(s) 24, 160, 196
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 107
BtsCI GGATG 3 cut(s) 24, 160, 196
BtsIMutI CAGTG 2 cut(s) 171, 208
Cfr13I GGNCC 2 cut(s) 10, 298
Csp6I GTAC 2 cut(s) 31, 362
CviAII CATG 3 cut(s) 151, 226, 431
CviJI RGCY 3 cut(s) 115, 317, 343
CviKI_1 RGCY 3 cut(s) 115, 317, 343
CviQI GTAC 2 cut(s) 31, 362
DdeI CTNAG 1 cut(s) 258
Eam1104I CTCTTC 3 cut(s) 63, 263, 281
EarI CTCTTC 3 cut(s) 63, 263, 281
Eco47I GGWCC 2 cut(s) 10, 298
EcoO109I RGGNCCY 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 3 cut(s) 154, 229, 434
FaiI YATR 9 cut(s) 45, 47, 152, 185, 227, 330, 338, 405, 432
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 150, 225, 430
FokI GGATG 3 cut(s) 31, 167, 203
Hin1II CATG 3 cut(s) 154, 229, 434
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 1 cut(s) 409
HpyAV CCTTC 3 cut(s) 67, 208, 232
HpyCH4III ACNGT 2 cut(s) 35, 88
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 3 cut(s) 154, 229, 434
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 7 cut(s) 41, 113, 140, 296, 372, 393, 406
MboII GAAGA 8 cut(s) 77, 80, 94, 274, 277, 280, 295, 298
MfeI CAATTG 1 cut(s) 142
MluCI AATT 3 cut(s) 95, 137, 142
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 142
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 121
NlaIII CATG 3 cut(s) 154, 229, 434
NlaIV GGNNCC 2 cut(s) 114, 300
OliI CACNNNNGTG 1 cut(s) 380
PasI CCCWGGG 1 cut(s) 127
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 114, 300
PspPI GGNCC 2 cut(s) 10, 298
PspPPI RGGWCCY 1 cut(s) 298
RsaI GTAC 2 cut(s) 32, 363
RsaNI GTAC 2 cut(s) 31, 362
RseI CAYNNNNRTG 1 cut(s) 380
Sau96I GGNCC 2 cut(s) 10, 298
ScaI AGTACT 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 128
SetI ASST 3 cut(s) 319, 326, 425
SfcI CTRYAG 1 cut(s) 418
SinI GGWCC 2 cut(s) 10, 298
SmiMI CAYNNNNRTG 1 cut(s) 380
Sse9I AATT 3 cut(s) 95, 137, 142
SsiI CCGC 1 cut(s) 13
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 35, 88
TasI AATT 3 cut(s) 95, 137, 142
TatI WGTACW 2 cut(s) 30, 361
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 2 cut(s) 178, 208
TspDTI ATGAA 5 cut(s) 17, 35, 171, 214, 407
TspRI CASTG 2 cut(s) 178, 208
VpaK11BI GGWCC 2 cut(s) 10, 298
XapI RAATTY 2 cut(s) 95, 137
ZrmI AGTACT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.