Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004924.1

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

161550 .. 161966

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004924.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ctgggacaccgaggtctgttttggactcgccactctaccattctttcgatcaagtgggatttctcgaatcttgaagaagcactcgaagaaggaggaaagctgtacaagaagagcagcagcgtttatcgattcggctcaacggaggaggccatggttaaaagagaagtggttgctttgatccctgtgttggtggccgttgtttcggcttctcctccttccaatgagcttggacttgttttaagtgagggaaaagtggaagagataattccgatgaagagattgaagatagactgggctccatatattcctttggacaaaggaggtcctgaaatctttgtcttgagctgcaagcaaagaagggctgctctcaaacacaaaaatgtcaagggaagccgtgatctattgaagtttgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

9.38

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	4 cut(s)	74, 283, 406, 413
AluBI	AGCT	3 cut(s)	100, 226, 345
AluI	AGCT	3 cut(s)	100, 226, 345
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	147, 192
ApeKI	GCWGC	4 cut(s)	114, 117, 345, 362
AspS9I	GGNCC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	298
BbvI	GCAGC	4 cut(s)	126, 129, 332, 349
BceAI	ACGGC	2 cut(s)	179, 378
BisI	GCNGC	4 cut(s)	115, 118, 346, 363
BlsI	GCNGC	4 cut(s)	116, 119, 347, 364
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	361
Bsa29I	ATCGAT	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	10, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	296
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	10, 150
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	2 cut(s)	158, 201
BseXI	GCAGC	4 cut(s)	126, 129, 332, 349
BshFI	GGCC	2 cut(s)	149, 194
BshVI	ATCGAT	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	149, 194
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	48, 177, 397
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	2 cut(s)	149, 194
BspDI	ATCGAT	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	172
BspQI	GCTCTTC	1 cut(s)	104
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	10, 150
BssMI	GATC	3 cut(s)	48, 177, 397
BssT1I	CCWWGG	1 cut(s)	150
Bst6I	CTCTTC	3 cut(s)	104, 252, 269
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	150
BstKTI	GATC	3 cut(s)	51, 180, 400
BstMBI	GATC	3 cut(s)	48, 177, 397
BstV1I	GCAGC	4 cut(s)	126, 129, 332, 349
Bsu15I	ATCGAT	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	149, 194
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	3 cut(s)	50, 179, 399
DpnII	GATC	3 cut(s)	48, 177, 397
DrdI	GACNNNNNNGTC	1 cut(s)	12
DseDI	GACNNNNNNGTC	1 cut(s)	12
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	3 cut(s)	104, 252, 269
EarI	CTCTTC	3 cut(s)	104, 252, 269
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	154
FaiI	YATR	3 cut(s)	152, 301, 303
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	115, 118, 346, 363
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	115, 118, 346, 363
GluI	GCNGC	4 cut(s)	115, 118, 346, 363
HaeIII	GGCC	2 cut(s)	149, 194
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	3 cut(s)	25, 67, 129
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	4 cut(s)	64, 71, 326, 340
HpyAV	CCTTC	3 cut(s)	83, 225, 351
HpyCH4V	TGCA	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	48, 177, 397
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	3 cut(s)	195, 277, 339
Lsp1109I	GCAGC	4 cut(s)	126, 129, 332, 349
MalI	GATC	3 cut(s)	50, 179, 399
MboI	GATC	3 cut(s)	48, 177, 397
MboII	GAAGA	6 cut(s)	86, 98, 121, 269, 286, 295
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	7 cut(s)	5, 86, 136, 139, 222, 238, 314
MseI	TTAA	2 cut(s)	156, 239
MslI	CAYNNNNRTG	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	48, 177, 397
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	67, 129
PkrI	GCNGC	4 cut(s)	116, 119, 347, 364
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	156, 239
SatI	GCNGC	4 cut(s)	115, 118, 346, 363
Sau3AI	GATC	3 cut(s)	48, 177, 397
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	5 cut(s)	16, 102, 228, 325, 347
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	4 cut(s)	47, 65, 84, 127
TasI	AATT	1 cut(s)	264
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	67, 129
Tru1I	TTAA	2 cut(s)	156, 239
Tru9I	TTAA	2 cut(s)	156, 239
TseI	GCWGC	4 cut(s)	114, 117, 345, 362
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.