Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Forward (+)

5707935 .. 5709611

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1083500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAATTTTCTGTTCAGTAATACAATGGCAAGAGGAGCTAAGAGGAAGGCCAGCCAGAGAGAAGAAAACAAGGAAAATTCGACCAAGGCAGACAACCACAAAGAACAATCGAGCAAGGCCGCCACTCGGTCAAAGCGGGTCAAGGCATCGCACCCCCAATCCGAGCCTGAGTACTTTGAGGAGCCTCGCCAATTGGAAGATCTCTGGAAGGCTGCCTTTCCTGTTGGGACAGAGTGGGATCACTTGGACAAGGTGTACCAATTCAAGTGGGATTTCTCAAACCTTGAAAAAGCATTTGAAGAGGGGGGCAAGCTGCACGATCTTGGGAACAACAAAGTGTATCTCTTCGGTGGTACAGAGCCTCAACAAGTCCCCTATAAGGGTGATTTGAAAATTATTTACATACCTATTGTGGTGGCTGTTGTATCGCCTTGCCCACCTTCTGACAAAATTGGGATTAAGTCGGTTCAGAGAGAGACTGAAGAAATTGTTCCAATGAAACAGATGAAAATGGATTGGATTCCATATATTCCTTATGACAAGAGAGACAGCCAAGTTGTTGAATATAGTCGAAATTCTCCTCAAATATTTGTGCTGGGATGCACTCAGAGACGGGCTTCCTTGAAACACATGAAGATTGATCGTCTAAAGAAATTTGATTACTGCTTGCCGTATCTAATGCCGATCAAGGAAGAGGAGCTTGAGCTGAGCACCGAAGTCGACATACTTTTTCCACAGGAACCAAATCCACCGGTTTACTGTGTGTTTGATTGGCAGTTTGATGAAGTTGAGGAGTTCACTGATGAGCGGATAAAAGAGGAGGAATTATCTGCGGATCAAAAGGATGCCTTCATGGAGTTTGTCAAGGAGAAAGTGCGTCAACAAAAGAAAGAAAACCGAGAGAAAAAAGAGGCCCGCAAACTAGAATTTGAAAAAATGAGTACGGAAACTAAAGCAGCATTTGAAAATTTGAGGTATTACAAGTTCTACCCGGTGCAAACACCCGATACTCCTGACATATCAGGTGTCAAGGCTGCATACATCAACAGGTACTACAACAAGGCTCATGAGGTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

42.29

Weight (kDa)

6.03

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	808
AccI	GTMKAC	1 cut(s)	720
AciI	CCGC	5 cut(s)	120, 136, 808, 833, 916
AclWI	GGATC	2 cut(s)	246, 843
AcsI	RAATTY	6 cut(s)	4, 76, 574, 653, 926, 967
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	5 cut(s)	173, 257, 355, 943, 1052
AfiI	CCNNNNNNNGG	3 cut(s)	126, 379, 380
AgeI	ACCGGT	1 cut(s)	751
AgsI	TTSAA	8 cut(s)	265, 287, 299, 391, 563, 625, 932, 965
AluBI	AGCT	4 cut(s)	38, 313, 700, 706
AluI	AGCT	4 cut(s)	38, 313, 700, 706
Alw21I	GWGCWC	1 cut(s)	713
Alw26I	GTCTC	3 cut(s)	470, 540, 604
AlwI	GGATC	2 cut(s)	246, 843
AoxI	GGCC	3 cut(s)	48, 117, 912
ApeKI	GCWGC	4 cut(s)	212, 313, 956, 1034
ApoI	RAATTY	6 cut(s)	4, 76, 574, 653, 926, 967
AsiGI	ACCGGT	1 cut(s)	751
Asp700I	GAANNNNTTC	1 cut(s)	489
AspS9I	GGNCC	1 cut(s)	913
AsuC2I	CCSGG	1 cut(s)	992
AsuHPI	GGTGA	1 cut(s)	395
BarI	GAAGNNNNNNTAC	2 cut(s)	708, 740
Bbv12I	GWGCWC	1 cut(s)	713
BbvI	GCAGC	4 cut(s)	199, 300, 968, 1021
BceAI	ACGGC	1 cut(s)	655
BcgI	CGANNNNNNTGC	2 cut(s)	700, 734
BcnI	CCSGG	1 cut(s)	992
BcoDI	GTCTC	3 cut(s)	470, 540, 604
BfaI	CTAG	1 cut(s)	923
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	5 cut(s)	120, 213, 314, 957, 1035
BlpI	GCTNAGC	1 cut(s)	707
BlsI	GCNGC	5 cut(s)	121, 214, 315, 958, 1036
BmcAI	AGTACT	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	992
BmgT120I	GGNCC	1 cut(s)	913
BmiI	GGNNCC	2 cut(s)	183, 741
BmrFI	CCNGG	1 cut(s)	992
BmsI	GCATC	3 cut(s)	155, 590, 835
Bpu1102I	GCTNAGC	1 cut(s)	707
BpuEI	CTTGAG	1 cut(s)	722
BpuMI	CCSGG	1 cut(s)	992
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 379, 380
Bse118I	RCCGGY	1 cut(s)	751
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	605, 850
BseLI	CCNNNNNNNGG	3 cut(s)	126, 379, 380
BseMII	CTCAG	3 cut(s)	159, 620, 698
BseRI	GAGGAG	6 cut(s)	48, 194, 570, 710, 806, 833
BseXI	GCAGC	4 cut(s)	199, 300, 968, 1021
BseYI	CCCAGC	1 cut(s)	595
BsgI	GTGCAG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	50, 119, 914
BshTI	ACCGGT	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	713
BsiSI	CCGG	2 cut(s)	752, 992
BslFI	GGGAC	2 cut(s)	241, 356
BslI	CCNNNNNNNGG	3 cut(s)	126, 379, 380
BsmAI	GTCTC	3 cut(s)	470, 540, 604
BsmBI	CGTCTC	1 cut(s)	604
BsmFI	GGGAC	2 cut(s)	241, 356
BsnI	GGCC	3 cut(s)	50, 119, 914
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	6 cut(s)	199, 238, 319, 640, 684, 835
Bsp1720I	GCTNAGC	1 cut(s)	707
BspACI	CCGC	5 cut(s)	120, 136, 808, 833, 916
BspANI	GGCC	3 cut(s)	50, 119, 914
BspCNI	CTCAG	3 cut(s)	160, 619, 699
BspHI	TCATGA	1 cut(s)	1066
BspLI	GGNNCC	2 cut(s)	183, 741
BspPI	GGATC	2 cut(s)	246, 843
BsrBI	CCGCTC	1 cut(s)	808
BsrFI	RCCGGY	1 cut(s)	751
BssAI	RCCGGY	1 cut(s)	751
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	6 cut(s)	199, 238, 319, 640, 684, 835
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	761
Bst6I	CTCTTC	3 cut(s)	294, 350, 687
BstC8I	GCNNGC	4 cut(s)	52, 311, 668, 916
BstDEI	CTNAG	4 cut(s)	39, 168, 606, 707
BstF5I	GGATG	2 cut(s)	605, 850
BstKTI	GATC	6 cut(s)	202, 241, 322, 643, 687, 838
BstMAI	GTCTC	3 cut(s)	470, 540, 604
BstMBI	GATC	6 cut(s)	199, 238, 319, 640, 684, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	990
BstV1I	GCAGC	4 cut(s)	199, 300, 968, 1021
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	3 cut(s)	50, 119, 914
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	605, 850
BtsIMutI	CAGTG	1 cut(s)	798
Cac8I	GCNNGC	4 cut(s)	52, 311, 668, 916
CciI	TCATGA	1 cut(s)	1066
Cfr10I	RCCGGY	1 cut(s)	751
Cfr13I	GGNCC	1 cut(s)	913
CseI	GACGC	1 cut(s)	866
Csp6I	GTAC	5 cut(s)	172, 256, 354, 942, 1051
CspAI	ACCGGT	1 cut(s)	751
CspCI	CAANNNNNGTGG	2 cut(s)	248, 283
CviAII	CATG	3 cut(s)	631, 853, 1067
CviQI	GTAC	5 cut(s)	172, 256, 354, 942, 1051
DdeI	CTNAG	4 cut(s)	39, 168, 606, 707
DpnI	GATC	6 cut(s)	201, 240, 321, 642, 686, 837
DpnII	GATC	6 cut(s)	199, 238, 319, 640, 684, 835
Eam1104I	CTCTTC	3 cut(s)	294, 350, 687
EarI	CTCTTC	3 cut(s)	294, 350, 687
Eco130I	CCWWGG	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
Esp3I	CGTCTC	1 cut(s)	604
FaeI	CATG	3 cut(s)	634, 856, 1070
FalI	AAGNNNNNCTT	6 cut(s)	200, 232, 684, 716, 833, 865
FaqI	GGGAC	2 cut(s)	241, 356
FatI	CATG	3 cut(s)	630, 852, 1066
FauI	CCCGC	2 cut(s)	129, 923
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	5 cut(s)	120, 213, 314, 957, 1035
FokI	GGATG	2 cut(s)	612, 857
Fsp4HI	GCNGC	5 cut(s)	120, 213, 314, 957, 1035
FspBI	CTAG	1 cut(s)	923
GluI	GCNGC	5 cut(s)	120, 213, 314, 957, 1035
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	3 cut(s)	50, 119, 914
HapII	CCGG	2 cut(s)	752, 992
HgaI	GACGC	1 cut(s)	866
Hin1II	CATG	3 cut(s)	634, 856, 1070
HincII	GTYRAC	2 cut(s)	721, 881
HindII	GTYRAC	2 cut(s)	721, 881
HinfI	GANTC	1 cut(s)	520
HpaII	CCGG	2 cut(s)	752, 992
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	5 cut(s)	256, 721, 757, 798, 881
Hpy188I	TCNGA	4 cut(s)	163, 445, 471, 609
Hpy188III	TCNNGA	3 cut(s)	205, 1013, 1067
Hpy8I	GTNNAC	5 cut(s)	256, 721, 757, 798, 881
HpyAV	CCTTC	4 cut(s)	40, 202, 450, 859
HpyCH4III	ACNGT	1 cut(s)	761
HpyCH4V	TGCA	4 cut(s)	316, 603, 997, 1037
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	4 cut(s)	39, 168, 606, 707
Hsp92II	CATG	3 cut(s)	634, 856, 1070
Kzo9I	GATC	6 cut(s)	199, 238, 319, 640, 684, 835
LmnI	GCTCC	3 cut(s)	35, 181, 697
Lsp1109I	GCAGC	4 cut(s)	199, 300, 968, 1021
LweI	GCATC	3 cut(s)	155, 590, 835
MaeI	CTAG	1 cut(s)	923
MalI	GATC	6 cut(s)	201, 240, 321, 642, 686, 837
MbiI	CCGCTC	1 cut(s)	808
MboI	GATC	6 cut(s)	199, 238, 319, 640, 684, 835
MboII	GAAGA	7 cut(s)	74, 209, 311, 337, 494, 646, 704
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	713
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	1 cut(s)	459
MspI	CCGG	2 cut(s)	752, 992
MspR9I	CCNGG	1 cut(s)	992
MunI	CAATTG	1 cut(s)	191
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	992
NdeII	GATC	6 cut(s)	199, 238, 319, 640, 684, 835
NlaIII	CATG	3 cut(s)	634, 856, 1070
NlaIV	GGNNCC	2 cut(s)	183, 741
PagI	TCATGA	1 cut(s)	1066
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	520
PinAI	ACCGGT	1 cut(s)	751
PkrI	GCNGC	5 cut(s)	121, 214, 315, 958, 1036
PspFI	CCCAGC	1 cut(s)	595
PspN4I	GGNNCC	2 cut(s)	183, 741
PspPI	GGNCC	1 cut(s)	913
PsrI	GAACNNNNNNTAC	2 cut(s)	968, 1000
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	5 cut(s)	173, 257, 355, 943, 1052
RsaNI	GTAC	5 cut(s)	172, 256, 354, 942, 1051
SalI	GTCGAC	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	5 cut(s)	120, 213, 314, 957, 1035
Sau3AI	GATC	6 cut(s)	199, 238, 319, 640, 684, 835
Sau96I	GGNCC	1 cut(s)	913
ScaI	AGTACT	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	992
SduI	GDGCHC	1 cut(s)	713
SfaNI	GCATC	3 cut(s)	155, 590, 835
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
SsiI	CCGC	5 cut(s)	120, 136, 808, 833, 916
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	1 cut(s)	923
StyD4I	CCNGG	1 cut(s)	990
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	761
TaqI	TCGA	4 cut(s)	80, 110, 571, 720
TaqII	GACCGA	1 cut(s)	117
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	805
TseI	GCWGC	4 cut(s)	212, 313, 956, 1034
TspDTI	ATGAA	6 cut(s)	17, 512, 521, 647, 798, 841
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	1 cut(s)	805
XapI	RAATTY	6 cut(s)	4, 76, 574, 653, 926, 967
XmiI	GTMKAC	1 cut(s)	720
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	1 cut(s)	923
ZrmI	AGTACT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.