Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

2491388 .. 2492350

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG037300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCAGAGAAAGGCGTTGAGGGAACTAGAGGTTGAAACCGCCGTTCAGCCACCGCGAAAGCGGCACAAGCCCCGACCTGCCGAGTACTTGGAGAAGCCCCGGAGCCTAGAGGGTCTATGGAAGGCTGCCTTTCCTGCTGGGACACCGAGGTCCCTTTTGGACTCGCCACTCTACCATTCTTTCAAGTGGGATTTCTCGAATCTTGAAGGAGCACTCGAAGAAGGGGGAAAGCTGTACAAGAAGAGCAACAGAGTCTATCTATTCGGCTCCACGGAGGAGGCCATGGTTAGAAAAGAAGTGGTTGCTTTGATCCCTGTGGTGGTGGCAGTAGTTTCGGCTTCTCCACCTTCGAATGAGCTTGGACTTGTTTTAAGCGAGGGAAAAGTGGAAGAGATAATTCCGATGAAGAGATTGAAGATAGACTGGGCTCCGTATGTTCCTTTGGACAAGAGAGTAGACAAAGAAGGTTCTGAAATCTTTGTCTTGAGCTGCAAGCAAAGAAGGGCTGCTCTCAAACACAAAAATGTCAAGGGAAACAATGATCTATTGAAGTTTGAATACGCCGTGCCTTATTTGGATCCAGCGGCAAAAGTAAAGTGTCATGAAGTTCCTGTTCAGGAGGAGGAGGAGTACTTTAGTGCTAATGATGATGAGCTGGAGGAGTTGTACTTCAGTGGTGACGATGAGAACCAGGTGATAGAAGAAGATGATGAAAAGAATGTCATGGTGGAAGAAGAAGCAAAGGGAGAAAATATTGATCTTCGAGTTGGGGAAGGCGGCCGGAGAAGAAGTGTGGAGAATATGATGAAGATGAGGATTTACAAGTTCTATCCGGTACAAACACTGGATGCTCCTGACATATCAGAGTTTAAGAATGCATTTGTCAACAGGTACTATGGCACTGCTCATGATATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

306

Amino Acids

35.05

Weight (kDa)

5.36

Isoelectric Point (pI)

56.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	1 cut(s)	55
AciI	CCGC	5 cut(s)	39, 53, 61, 584, 777
AclWI	GGATC	3 cut(s)	304, 572, 585
AcoI	YGGCCR	1 cut(s)	778
AcuI	CTGAAG	1 cut(s)	655
AfaI	GTAC	6 cut(s)	86, 236, 632, 668, 837, 893
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	6 cut(s)	35, 184, 206, 415, 550, 557
AjnI	CCWGG	1 cut(s)	690
AluBI	AGCT	4 cut(s)	232, 358, 489, 655
AluI	AGCT	4 cut(s)	232, 358, 489, 655
Alw21I	GWGCWC	1 cut(s)	214
AlwI	GGATC	3 cut(s)	304, 572, 585
AoxI	GGCC	2 cut(s)	279, 778
ApeKI	GCWGC	3 cut(s)	125, 489, 506
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	689, 706
AsuII	TTCGAA	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	577
BanII	GRGCYC	1 cut(s)	430
BarI	GAAGNNNNNNTAC	2 cut(s)	542, 574
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	112, 476, 493
BceAI	ACGGC	2 cut(s)	26, 548
BcgI	CGANNNNNNTGC	2 cut(s)	315, 349
BciT130I	CCWGG	1 cut(s)	692
BcnI	CCSGG	1 cut(s)	100
BfaI	CTAG	2 cut(s)	26, 107
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	6 cut(s)	62, 126, 490, 507, 585, 778
BlsI	GCNGC	6 cut(s)	63, 127, 491, 508, 586, 779
BmcAI	AGTACT	2 cut(s)	86, 632
Bme1390I	CCNGG	2 cut(s)	100, 692
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	5 cut(s)	104, 152, 268, 429, 579
BmrFI	CCNGG	2 cut(s)	100, 692
BmrI	ACTGGG	1 cut(s)	433
BmsI	GCATC	1 cut(s)	838
BmuI	ACTGGG	1 cut(s)	433
BpmI	CTGGAG	1 cut(s)	677
Bpu14I	TTCGAA	1 cut(s)	350
BpuEI	CTTGAG	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	100
BsaJI	CCNNGG	4 cut(s)	98, 146, 270, 282
BsaWI	WCCGGW	1 cut(s)	832
BsaXI	ACNNNNNCTCC	6 cut(s)	614, 644, 650, 680, 775, 805
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	2 cut(s)	428, 849
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	4 cut(s)	98, 146, 270, 282
BseGI	GGATG	1 cut(s)	853
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	428, 849
BseRI	GAGGAG	5 cut(s)	290, 635, 638, 641, 674
BseX3I	CGGCCG	1 cut(s)	778
BseXI	GCAGC	3 cut(s)	112, 476, 493
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	1 cut(s)	55
Bsh1285I	CGRYCG	1 cut(s)	781
BshFI	GGCC	2 cut(s)	281, 780
BsiEI	CGRYCG	1 cut(s)	781
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	3 cut(s)	100, 781, 833
BslFI	GGGAC	2 cut(s)	136, 154
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmFI	GGGAC	2 cut(s)	136, 154
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	2 cut(s)	281, 780
Bsp119I	TTCGAA	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	214, 430
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	309, 541, 577, 757
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	5 cut(s)	39, 53, 61, 584, 777
BspANI	GGCC	2 cut(s)	281, 780
BspFNI	CGCG	1 cut(s)	55
BspHI	TCATGA	2 cut(s)	601, 907
BspLI	GGNNCC	5 cut(s)	104, 152, 268, 429, 579
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	3 cut(s)	304, 572, 585
BspQI	GCTCTTC	1 cut(s)	236
BspT104I	TTCGAA	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	428, 849
BssECI	CCNNGG	4 cut(s)	98, 146, 270, 282
BssMI	GATC	4 cut(s)	309, 541, 577, 757
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	1 cut(s)	692
Bst6I	CTCTTC	3 cut(s)	236, 384, 401
BstAUI	TGTACA	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	494
BstDSI	CCRYGG	2 cut(s)	270, 282
BstF5I	GGATG	1 cut(s)	853
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	4 cut(s)	312, 544, 580, 760
BstMBI	GATC	4 cut(s)	309, 541, 577, 757
BstMCI	CGRYCG	1 cut(s)	781
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 67, 134
BstNI	CCWGG	1 cut(s)	692
BstSCI	CCNGG	2 cut(s)	98, 690
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	3 cut(s)	112, 476, 493
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BstZI	CGGCCG	1 cut(s)	778
BsuRI	GGCC	2 cut(s)	281, 780
BtgI	CCRYGG	2 cut(s)	270, 282
BtsCI	GGATG	1 cut(s)	853
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	3 cut(s)	679, 842, 900
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	1 cut(s)	494
CciI	TCATGA	2 cut(s)	601, 907
Cfr13I	GGNCC	1 cut(s)	150
CsiI	ACCWGGT	1 cut(s)	690
Csp6I	GTAC	6 cut(s)	85, 235, 631, 667, 836, 892
CviAII	CATG	4 cut(s)	283, 602, 724, 908
CviQI	GTAC	6 cut(s)	85, 235, 631, 667, 836, 892
DpnI	GATC	4 cut(s)	311, 543, 579, 759
DpnII	GATC	4 cut(s)	309, 541, 577, 757
DrdI	GACNNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	778
EagI	CGGCCG	1 cut(s)	778
Eam1104I	CTCTTC	3 cut(s)	236, 384, 401
EarI	CTCTTC	3 cut(s)	236, 384, 401
EclXI	CGGCCG	1 cut(s)	778
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	150
Eco52I	CGGCCG	1 cut(s)	778
Eco57I	CTGAAG	1 cut(s)	655
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	282
EcoT22I	ATGCAT	1 cut(s)	880
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	4 cut(s)	286, 605, 727, 911
FaiI	YATR	9 cut(s)	118, 284, 435, 603, 725, 803, 860, 897, 909
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FaqI	GGGAC	2 cut(s)	136, 154
FatI	CATG	4 cut(s)	282, 601, 723, 907
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	6 cut(s)	62, 126, 490, 507, 585, 778
FokI	GGATG	1 cut(s)	860
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	6 cut(s)	62, 126, 490, 507, 585, 778
FspBI	CTAG	2 cut(s)	26, 107
GluI	GCNGC	6 cut(s)	62, 126, 490, 507, 585, 778
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	2 cut(s)	281, 780
HapII	CCGG	3 cut(s)	100, 781, 833
Hin1II	CATG	4 cut(s)	286, 605, 727, 911
HincII	GTYRAC	1 cut(s)	886
HindII	GTYRAC	1 cut(s)	886
HinfI	GANTC	3 cut(s)	161, 199, 252
HpaII	CCGG	3 cut(s)	100, 781, 833
HphI	GGTGA	2 cut(s)	689, 706
Hpy166II	GTNNAC	2 cut(s)	457, 886
Hpy188I	TCNGA	3 cut(s)	402, 472, 865
Hpy188III	TCNNGA	7 cut(s)	196, 203, 484, 602, 617, 854, 908
Hpy8I	GTNNAC	2 cut(s)	457, 886
HpyAV	CCTTC	7 cut(s)	115, 200, 215, 357, 458, 495, 767
HpyCH4V	TGCA	3 cut(s)	4, 492, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 67, 134
Hsp92II	CATG	4 cut(s)	286, 605, 727, 911
Kzo9I	GATC	4 cut(s)	309, 541, 577, 757
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	5 cut(s)	102, 209, 272, 433, 856
Lsp1109I	GCAGC	3 cut(s)	112, 476, 493
LweI	GCATC	1 cut(s)	838
MabI	ACCWGGT	1 cut(s)	690
MaeI	CTAG	2 cut(s)	26, 107
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	4 cut(s)	311, 543, 579, 759
MboI	GATC	4 cut(s)	309, 541, 577, 757
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	214, 430
MluCI	AATT	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	155, 261
Mph1103I	ATGCAT	1 cut(s)	880
MseI	TTAA	2 cut(s)	371, 870
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	3 cut(s)	100, 781, 833
MspR9I	CCNGG	2 cut(s)	100, 692
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	1 cut(s)	692
MvnI	CGCG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	61, 67, 134
NciI	CCSGG	1 cut(s)	100
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	4 cut(s)	309, 541, 577, 757
NlaIII	CATG	4 cut(s)	286, 605, 727, 911
NlaIV	GGNNCC	5 cut(s)	104, 152, 268, 429, 579
NmeAIII	GCCGAG	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	677
NsiI	ATGCAT	1 cut(s)	880
NspV	TTCGAA	1 cut(s)	350
PagI	TCATGA	2 cut(s)	601, 907
PciSI	GCTCTTC	1 cut(s)	236
PctI	GAATGC	1 cut(s)	880
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	6 cut(s)	63, 127, 491, 508, 586, 779
PleI	GAGTC	2 cut(s)	155, 260
PpsI	GAGTC	2 cut(s)	155, 260
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	690
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	5 cut(s)	104, 152, 268, 429, 579
PspPI	GGNCC	1 cut(s)	150
PspPPI	RGGWCCY	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	577
RsaI	GTAC	6 cut(s)	86, 236, 632, 668, 837, 893
RsaNI	GTAC	6 cut(s)	85, 235, 631, 667, 836, 892
RseI	CAYNNNNRTG	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	371, 870
SatI	GCNGC	6 cut(s)	62, 126, 490, 507, 585, 778
Sau3AI	GATC	4 cut(s)	309, 541, 577, 757
Sau96I	GGNCC	1 cut(s)	150
ScaI	AGTACT	2 cut(s)	86, 632
SchI	GAGTC	2 cut(s)	155, 261
ScrFI	CCNGG	2 cut(s)	100, 692
SduI	GDGCHC	2 cut(s)	214, 430
SexAI	ACCWGGT	1 cut(s)	690
SfaNI	GCATC	1 cut(s)	838
SfuI	TTCGAA	1 cut(s)	350
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	5 cut(s)	39, 53, 61, 584, 777
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	2 cut(s)	26, 107
StyD4I	CCNGG	2 cut(s)	98, 690
StyI	CCWWGG	1 cut(s)	282
TaqI	TCGA	4 cut(s)	197, 216, 350, 763
TasI	AATT	1 cut(s)	396
TatI	WGTACW	4 cut(s)	84, 234, 630, 666
TauI	GCSGC	3 cut(s)	64, 587, 780
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	371, 870
Tru9I	TTAA	2 cut(s)	371, 870
TscAI	CASTG	3 cut(s)	679, 849, 907
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	3 cut(s)	125, 489, 506
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	4 cut(s)	419, 618, 726, 821
TspGWI	ACGGA	2 cut(s)	287, 420
TspRI	CASTG	3 cut(s)	679, 849, 907
VpaK11BI	GGWCC	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	2 cut(s)	26, 107
ZrmI	AGTACT	2 cut(s)	86, 632
Zsp2I	ATGCAT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.