Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

39642469 .. 39643010

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029505

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAGAGAAAGGCTTTGAGGGAACTGGAGGTTGAAATTGCAGCTCAGCCACTACGAAAGCGGGTCAAGCCCCGGTCCGCCAAGTACTTGGAGGAGCCCCAGAGCTTGGAGGGTCTATGGAAGGTTGCGTTTTCGGTCGGGACACCGAGCTCCACGGAGGAAGCCATGGTTAAAAGAGAAGTGCTAGCTTTGATCCCTGTGGTGGTGGCCGTTGTTTCGGCTTCTCCCCCTTCCAATGAGCTTGGACTTGTTTCAACTGAGGGAGAAGTGGAAGAGATAAATTTGATGAGGATTTACAAGTTCCATCCGATACAAACACCGCATATGCCTGACATATCGCAGTTTAAGAATGCATTTGTCAACAGGTACTATGACACTGCTCATGAGATGATTGTTGGCATGAGTCATGCCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.55

Weight (kDa)

6.92

Isoelectric Point (pI)

54.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	106
AciI	CCGC	3 cut(s)	61, 78, 320
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	280
AfaI	GTAC	2 cut(s)	86, 368
AfiI	CCNNNNNNNGG	2 cut(s)	106, 202
AgsI	TTSAA	2 cut(s)	35, 255
AluBI	AGCT	5 cut(s)	44, 105, 150, 188, 241
AluI	AGCT	5 cut(s)	44, 105, 150, 188, 241
Alw21I	GWGCWC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	75
AsuC2I	CCSGG	1 cut(s)	73
AsuNHI	GCTAGC	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	2 cut(s)	99, 152
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	73
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	43
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	73
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	73
BmtI	GCTAGC	1 cut(s)	188
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuMI	CCSGG	1 cut(s)	73
BsaJI	CCNNGG	3 cut(s)	71, 153, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 202
Bse1I	ACTGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	71, 153, 165
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	106, 202
BseMII	CTCAG	2 cut(s)	59, 249
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	53
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	209
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	2 cut(s)	106, 202
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	99, 152
Bsp143I	GATC	1 cut(s)	192
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	3 cut(s)	61, 78, 320
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	2 cut(s)	58, 250
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	96
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	30
BssECI	CCNNGG	3 cut(s)	71, 153, 165
BssMI	GATC	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	45, 258
BstDSI	CCRYGG	2 cut(s)	153, 165
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	209
BtgI	CCRYGG	2 cut(s)	153, 165
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	382
Cfr13I	GGNCC	1 cut(s)	75
CpoI	CGGWCCG	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	85, 367
CspI	CGGWCCG	1 cut(s)	75
CviAII	CATG	5 cut(s)	166, 383, 400, 407, 412
CviQI	GTAC	2 cut(s)	85, 367
DdeI	CTNAG	2 cut(s)	45, 258
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	99, 152
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	355
EcoT38I	GRGCYC	2 cut(s)	99, 152
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	169, 386, 403, 410, 415
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	5 cut(s)	165, 382, 399, 406, 411
FauI	CCCGC	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	291
FriOI	GRGCYC	2 cut(s)	99, 152
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	5 cut(s)	169, 386, 403, 410, 415
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	139, 383
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	115, 240
HpyCH4V	TGCA	2 cut(s)	41, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	2 cut(s)	45, 258
Hsp92II	CATG	5 cut(s)	169, 386, 403, 410, 415
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	94, 155
LpnPI	CCDG	6 cut(s)	11, 86, 113, 210, 342, 349
Lsp1109I	GCAGC	1 cut(s)	53
MaeI	CTAG	1 cut(s)	185
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	2 cut(s)	16, 284
MhlI	GDGCHC	2 cut(s)	99, 152
MluCI	AATT	2 cut(s)	36, 280
MlyI	GAGTC	1 cut(s)	412
MnlI	CCTC	7 cut(s)	12, 22, 85, 103, 151, 253, 282
Mph1103I	ATGCAT	1 cut(s)	355
MseI	TTAA	2 cut(s)	171, 345
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	73
Mva1269I	GAATGC	1 cut(s)	355
MwoI	GCNNNNNNNGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	165
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	1 cut(s)	192
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	5 cut(s)	169, 386, 403, 410, 415
NlaIV	GGNNCC	1 cut(s)	96
NsiI	ATGCAT	1 cut(s)	355
PagI	TCATGA	1 cut(s)	382
PctI	GAATGC	1 cut(s)	355
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	96
PspPI	GGNCC	1 cut(s)	75
RsaI	GTAC	2 cut(s)	86, 368
RsaNI	GTAC	2 cut(s)	85, 367
Rsr2I	CGGWCCG	1 cut(s)	75
RsrII	CGGWCCG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	171, 345
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	1 cut(s)	75
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	2 cut(s)	99, 152
SetI	ASST	8 cut(s)	33, 46, 107, 126, 152, 190, 243, 368
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	2 cut(s)	36, 280
SsiI	CCGC	3 cut(s)	61, 78, 320
SspMI	CTAG	1 cut(s)	185
SstI	GAGCTC	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	165
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	2 cut(s)	36, 280
TatI	WGTACW	1 cut(s)	84
Tru1I	TTAA	2 cut(s)	171, 345
Tru9I	TTAA	2 cut(s)	171, 345
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	382
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	280
XspI	CTAG	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.