Rroxscaffold_164G00436460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000164
OG0000661
Physical Location & Seq
Forward (+)
355647 .. 356001
355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_164G00436460.1

Sequence Viewer

Length: 288 bp
ATGCCTTATTTGGATCCGGCGGCACAACTGGAGGAGTTGTACTTCAGTGGTGAAGATGAGAATGCGGTAATAGAAGAAGATGATGAAAAGAATATCAAGGTGGAAGAAGAAGCAAAGGGAGAAAATATTGATCTTCGAGTTGGGGAAGGCGGCCGGAGAAGAAGTGTGGAGAATATGATGAAGATGAGGATTTACAAGTTCTATCCGGTACAAACACTGGATACTCCTGACATATCAGAGTTTAAGAATGCATTTGTCAACAGGTACTATGCATGGCACCGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.23

Weight (kDa)

4.64

Isoelectric Point (pI)

79.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 282
AciI CCGC 4 cut(s) 20, 65, 150, 280
AclWI GGATC 2 cut(s) 8, 21
AcoI YGGCCR 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 28
AfaI GTAC 3 cut(s) 41, 210, 266
AlwI GGATC 2 cut(s) 8, 21
AoxI GGCC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 62
BamHI GGATCC 1 cut(s) 13
BanI GGYRCC 1 cut(s) 276
BciVI GTATCC 1 cut(s) 214
BfuI GTATCC 1 cut(s) 214
BisI GCNGC 2 cut(s) 21, 151
BlsI GCNGC 2 cut(s) 22, 152
BmiI GGNNCC 2 cut(s) 15, 278
BpmI CTGGAG 1 cut(s) 50
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 148, 178
Bse1I ACTGG 2 cut(s) 33, 222
BseNI ACTGG 2 cut(s) 33, 222
BseRI GAGGAG 1 cut(s) 47
BseX3I CGGCCG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 276
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 3 cut(s) 17, 154, 206
BsmI GAATGC 2 cut(s) 67, 253
BsnI GGCC 1 cut(s) 153
Bsp143I GATC 2 cut(s) 13, 130
BspACI CCGC 4 cut(s) 20, 65, 150, 280
BspANI GGCC 1 cut(s) 153
BspHI TCATGA 1 cut(s) 284
BspLI GGNNCC 2 cut(s) 15, 278
BspPI GGATC 2 cut(s) 8, 21
BspT107I GGYRCC 1 cut(s) 276
BsrBI CCGCTC 1 cut(s) 282
BsrI ACTGG 2 cut(s) 33, 222
BssMI GATC 2 cut(s) 13, 130
BstKTI GATC 2 cut(s) 16, 133
BstMBI GATC 2 cut(s) 13, 130
BstMCI CGRYCG 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BstZI CGGCCG 1 cut(s) 151
BsuI GTATCC 1 cut(s) 214
BsuRI GGCC 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 52, 215
CciI TCATGA 1 cut(s) 284
Csp6I GTAC 3 cut(s) 40, 209, 265
CviAII CATG 2 cut(s) 273, 285
CviJI RGCY 1 cut(s) 153
CviKI_1 RGCY 1 cut(s) 153
CviQI GTAC 3 cut(s) 40, 209, 265
DpnI GATC 2 cut(s) 15, 132
DpnII GATC 2 cut(s) 13, 130
EaeI YGGCCR 1 cut(s) 151
EagI CGGCCG 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 151
Eco52I CGGCCG 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 28
EcoT22I ATGCAT 2 cut(s) 253, 274
FaeI CATG 2 cut(s) 276, 288
FaiI YATR 5 cut(s) 176, 233, 270, 274, 286
FatI CATG 2 cut(s) 272, 284
Fnu4HI GCNGC 2 cut(s) 21, 151
Fsp4HI GCNGC 2 cut(s) 21, 151
GluI GCNGC 2 cut(s) 21, 151
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 153
HapII CCGG 3 cut(s) 17, 154, 206
Hin1II CATG 2 cut(s) 276, 288
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HpaII CCGG 3 cut(s) 17, 154, 206
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 227, 285
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 251, 272
Hsp92II CATG 2 cut(s) 276, 288
Kzo9I GATC 2 cut(s) 13, 130
LpnPI CCDG 7 cut(s) 14, 30, 167, 203, 219, 240, 247
MalI GATC 2 cut(s) 15, 132
MbiI CCGCTC 1 cut(s) 282
MboI GATC 2 cut(s) 13, 130
MboII GAAGA 8 cut(s) 65, 86, 89, 116, 119, 125, 171, 193
MflI RGATCY 1 cut(s) 13
MnlI CCTC 2 cut(s) 25, 180
Mph1103I ATGCAT 2 cut(s) 253, 274
MseI TTAA 1 cut(s) 243
MspI CCGG 3 cut(s) 17, 154, 206
Mva1269I GAATGC 2 cut(s) 67, 253
NdeII GATC 2 cut(s) 13, 130
NlaIII CATG 2 cut(s) 276, 288
NlaIV GGNNCC 2 cut(s) 15, 278
NsiI ATGCAT 2 cut(s) 253, 274
PagI TCATGA 1 cut(s) 284
PctI GAATGC 2 cut(s) 67, 253
PkrI GCNGC 2 cut(s) 22, 152
PspN4I GGNNCC 2 cut(s) 15, 278
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 3 cut(s) 41, 210, 266
RsaNI GTAC 3 cut(s) 40, 209, 265
SaqAI TTAA 1 cut(s) 243
SatI GCNGC 2 cut(s) 21, 151
Sau3AI GATC 2 cut(s) 13, 130
SetI ASST 2 cut(s) 102, 266
SsiI CCGC 4 cut(s) 20, 65, 150, 280
SspI AATATT 1 cut(s) 127
TaqI TCGA 1 cut(s) 136
TatI WGTACW 1 cut(s) 39
TauI GCSGC 2 cut(s) 23, 153
Tru1I TTAA 1 cut(s) 243
Tru9I TTAA 1 cut(s) 243
TscAI CASTG 2 cut(s) 52, 222
TspDTI ATGAA 2 cut(s) 99, 194
TspRI CASTG 2 cut(s) 52, 222
Zsp2I ATGCAT 2 cut(s) 253, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.