RchiOBHm_Chr3g0452131

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
2917624 .. 2919155
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41934

Sequence Viewer

Length: 1035 bp
ATGAGGAAAGGAGCCAAGAGAAAGGCCCGGCCAGCGGCGGCGACGGAGGAAGCCGCCACCAAGCCCAAAGCCACCGCCACACGCGCCAAGCGCGTCAAGGCCTCGCAGCCGCAGCCGGAACCGGAATACGTAGAAGAGCAGCGCAACCTTCAAGATCTATGGAAGGCGGCGTTCCCGGTAGGCACCGAGTGGGATCGGCTGGAGTCAATCTATCAATACGACTGGGATTTCTCGAATCTCGAGAAGGAGTTCGAAGAAGAAGGAGGCAAGTTTCATGGAATCGGGGACAACAAAGTCTACCTCTTTGGCCAGACGGAGACCTCGTCGCCGTCGCAGCCGGTGCTGATCCCGACGCTTGTGGCCGTCGTGGCGCCTCGGCCGCCGTCGATGGAGATAGGGATTCGGTCCGTCCAGAGAGAAGATAAGGAGATAGTGCCGATGAGGCAGATGAAGATGGACTGGATCCCTTACATTCCTCTGGAGGAGAGAGAAGGGTGGAATTCCGAAAGGGCGAAGAAGTCCGATTCGAATTTGCCGCAGATTTTTGTGCTGGGGTGTACTCAGAGGAAGGCTGGGTTGAAGCAGATGAAGGAGGAGCGGTGGATGAAGTTCCAGTATTGTATGCCGTATTTGATGAACCCGAACGAGGAGGAGAAAGAGCAGAGTACTGTGGTGGATATACTCTTTCCCCGCGAGCCGCAAGCACCACTGTTTGTACAATTCGATTGGGAATTTGATGAGGTCGAGGAGTACACCGATGAGCTGATAAAGGCGGAGGAGTTGAGTGAGGATAAGAAGGAGGCGTTCATGGAGTTTGTGAGGGAGGAGGTGAAGAAAGCGAAGAAGAAGATTCGAGAGGAGAGGGAGGCGAAGAAGAAGCTCATGGAGGACCCTAAGTATCAGGAGGCGAAAATGTTCTATGAGAATATGAGGCTTTATAAGATTTACCCGGTGCAAACGCCGAACACTCCTGTGATAGAGATGAAGTCTAAGTATATCAACTACTACTACGGAAGCGCCCATGAGATTATTTGA

Protein Analysis

344

Amino Acids

40.59

Weight (kDa)

5.49

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
AasI GACNNNNNNGTC 1 cut(s) 293
AccB1I GGYRCC 2 cut(s) 182, 370
AccBSI CCGCTC 1 cut(s) 598
AccI GTMKAC 1 cut(s) 297
AccII CGCG 3 cut(s) 84, 93, 693
AclWI GGATC 4 cut(s) 201, 340, 457, 470
AcoI YGGCCR 4 cut(s) 29, 307, 360, 377
AcsI RAATTY 3 cut(s) 499, 529, 731
AcyI GRCGYC 1 cut(s) 371
AdeI CACNNNGTG 1 cut(s) 189
AfaI GTAC 4 cut(s) 559, 667, 717, 752
AfiI CCNNNNNNNGG 2 cut(s) 34, 646
AgsI TTSAA 2 cut(s) 152, 580
AleI CACNNNNGTG 1 cut(s) 971
AluBI AGCT 2 cut(s) 763, 880
AluI AGCT 2 cut(s) 763, 880
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 4 cut(s) 201, 340, 457, 470
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 6 cut(s) 24, 29, 99, 307, 360, 377
ApeKI GCWGC 4 cut(s) 106, 112, 139, 334
ApoI RAATTY 3 cut(s) 499, 529, 731
Asp700I GAANNNNTTC 2 cut(s) 248, 914
AspLEI GCGC 5 cut(s) 86, 93, 144, 373, 1019
AspS9I GGNCC 3 cut(s) 25, 405, 889
AsuC2I CCSGG 3 cut(s) 28, 176, 950
AsuHPI GGTGA 1 cut(s) 841
AsuII TTCGAA 2 cut(s) 252, 527
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 2 cut(s) 405, 889
BalI TGGCCA 1 cut(s) 309
BamHI GGATCC 1 cut(s) 462
BanI GGYRCC 2 cut(s) 182, 370
BbvI GCAGC 4 cut(s) 118, 124, 151, 346
BccI CCATC 2 cut(s) 382, 448
BceAI ACGGC 4 cut(s) 313, 347, 367, 610
BcnI CCSGG 3 cut(s) 28, 176, 950
BcoDI GTCTC 1 cut(s) 311
BfoI RGCGCY 2 cut(s) 374, 1020
BglI GCCNNNNNGGC 2 cut(s) 368, 442
BglII AGATCT 1 cut(s) 154
BmcAI AGTACT 1 cut(s) 667
Bme1390I CCNGG 3 cut(s) 28, 176, 950
Bme18I GGWCC 2 cut(s) 405, 889
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 3 cut(s) 25, 405, 889
BmiI GGNNCC 6 cut(s) 13, 120, 184, 372, 464, 891
BmrFI CCNGG 3 cut(s) 28, 176, 950
BmrI ACTGGG 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 232
BpmI CTGGAG 2 cut(s) 221, 500
Bpu14I TTCGAA 2 cut(s) 252, 527
BpuMI CCSGG 3 cut(s) 28, 176, 950
BsaAI YACGTR 1 cut(s) 130
BsaHI GRCGYC 1 cut(s) 371
BsaI GGTCTC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 584, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 646
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 3 cut(s) 227, 464, 613
BseDI CCNNGG 1 cut(s) 374
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 2 cut(s) 34, 646
BseMII CTCAG 1 cut(s) 575
BseNI ACTGG 3 cut(s) 227, 464, 613
BseRI GAGGAG 8 cut(s) 497, 608, 662, 665, 761, 791, 839, 872
BseX3I CGGCCG 1 cut(s) 377
BseXI GCAGC 4 cut(s) 118, 124, 151, 346
BseYI CCCAGC 2 cut(s) 550, 572
Bsh1236I CGCG 3 cut(s) 84, 93, 693
Bsh1285I CGRYCG 1 cut(s) 380
BshFI GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
BshNI GGYRCC 2 cut(s) 182, 370
BsiEI CGRYCG 1 cut(s) 380
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 6 cut(s) 28, 116, 122, 176, 338, 950
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 34, 646
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
Bso31I GGTCTC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 2 cut(s) 252, 527
Bsp1407I TGTACA 1 cut(s) 715
Bsp143I GATC 4 cut(s) 154, 193, 345, 462
BspANI GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
BspCNI CTCAG 1 cut(s) 574
BspFNI CGCG 3 cut(s) 84, 93, 693
BspLI GGNNCC 6 cut(s) 13, 120, 184, 372, 464, 891
BspPI GGATC 4 cut(s) 201, 340, 457, 470
BspQI GCTCTTC 1 cut(s) 129
BspT104I TTCGAA 2 cut(s) 252, 527
BspT107I GGYRCC 2 cut(s) 182, 370
BspTNI GGTCTC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 598
BsrFI RCCGGY 1 cut(s) 337
BsrGI TGTACA 1 cut(s) 715
BsrI ACTGG 3 cut(s) 227, 464, 613
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 374
BssMI GATC 4 cut(s) 154, 193, 345, 462
BssNI GRCGYC 1 cut(s) 371
Bst4CI ACNGT 2 cut(s) 670, 711
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 371
BstAPI GCANNNNNTGC 1 cut(s) 340
BstAUI TGTACA 1 cut(s) 715
BstBAI YACGTR 1 cut(s) 130
BstBI TTCGAA 2 cut(s) 252, 527
BstC8I GCNNGC 3 cut(s) 33, 695, 702
BstDEI CTNAG 3 cut(s) 561, 894, 990
BstF5I GGATG 1 cut(s) 609
BstFNI CGCG 3 cut(s) 84, 93, 693
BstH2I RGCGCY 2 cut(s) 374, 1020
BstHHI GCGC 5 cut(s) 86, 93, 144, 373, 1019
BstKTI GATC 4 cut(s) 157, 196, 348, 465
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 4 cut(s) 154, 193, 345, 462
BstMCI CGRYCG 1 cut(s) 380
BstMWI GCNNNNNNNGC 9 cut(s) 32, 83, 90, 112, 334, 340, 368, 379, 442
BstSCI CCNGG 3 cut(s) 26, 174, 948
BstSNI TACGTA 1 cut(s) 130
BstUI CGCG 3 cut(s) 84, 93, 693
BstV1I GCAGC 4 cut(s) 118, 124, 151, 346
BstX2I RGATCY 2 cut(s) 154, 462
BstYI RGATCY 2 cut(s) 154, 462
BstZI CGGCCG 1 cut(s) 377
BsuRI GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
BtsCI GGATG 1 cut(s) 609
BtsIMutI CAGTG 1 cut(s) 707
Cac8I GCNNGC 3 cut(s) 33, 695, 702
CfoI GCGC 5 cut(s) 86, 93, 144, 373, 1019
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 3 cut(s) 25, 405, 889
CpoI CGGWCCG 1 cut(s) 405
CseI GACGC 2 cut(s) 82, 361
Csp6I GTAC 4 cut(s) 558, 666, 716, 751
CspI CGGWCCG 1 cut(s) 405
CviAII CATG 4 cut(s) 275, 808, 883, 1022
CviQI GTAC 4 cut(s) 558, 666, 716, 751
DdeI CTNAG 3 cut(s) 561, 894, 990
DinI GGCGCC 1 cut(s) 372
DpnI GATC 4 cut(s) 156, 195, 347, 464
DpnII GATC 4 cut(s) 154, 193, 345, 462
DraIII CACNNNGTG 1 cut(s) 189
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 4 cut(s) 29, 307, 360, 377
EagI CGGCCG 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 788
EclXI CGGCCG 1 cut(s) 377
Eco105I TACGTA 1 cut(s) 130
Eco147I AGGCCT 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 2 cut(s) 405, 889
Eco52I CGGCCG 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 889
EcoRI GAATTC 1 cut(s) 499
EgeI GGCGCC 1 cut(s) 372
EheI GGCGCC 1 cut(s) 372
FaeI CATG 4 cut(s) 278, 811, 886, 1025
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 274, 807, 882, 1021
FauI CCCGC 1 cut(s) 698
FblI GTMKAC 1 cut(s) 297
FokI GGATG 1 cut(s) 616
GlaI GCGC 5 cut(s) 85, 92, 143, 372, 1018
GsaI CCCAGC 2 cut(s) 554, 576
GsuI CTGGAG 2 cut(s) 221, 500
HaeII RGCGCY 2 cut(s) 374, 1020
HaeIII GGCC 6 cut(s) 26, 31, 101, 309, 362, 379
HapII CCGG 6 cut(s) 28, 116, 122, 176, 338, 950
HgaI GACGC 2 cut(s) 82, 361
HhaI GCGC 5 cut(s) 86, 93, 144, 373, 1019
Hin1I GRCGYC 1 cut(s) 371
Hin1II CATG 4 cut(s) 278, 811, 886, 1025
Hin6I GCGC 5 cut(s) 84, 91, 142, 371, 1017
HinP1I GCGC 5 cut(s) 84, 91, 142, 371, 1017
HinfI GANTC 6 cut(s) 203, 235, 279, 400, 524, 850
HpaII CCGG 6 cut(s) 28, 116, 122, 176, 338, 950
HphI GGTGA 1 cut(s) 841
Hpy166II GTNNAC 3 cut(s) 298, 558, 753
Hpy188I TCNGA 3 cut(s) 505, 523, 564
Hpy188III TCNNGA 9 cut(s) 152, 232, 239, 241, 349, 412, 479, 854, 902
Hpy8I GTNNAC 3 cut(s) 298, 558, 753
Hpy99I CGWCG 6 cut(s) 46, 328, 334, 355, 368, 388
HpyAV CCTTC 8 cut(s) 157, 158, 238, 254, 485, 562, 583, 790
HpyCH4III ACNGT 2 cut(s) 670, 711
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 955
HpyF10VI GCNNNNNNNGC 9 cut(s) 32, 83, 90, 112, 334, 340, 368, 379, 442
HpyF3I CTNAG 3 cut(s) 561, 894, 990
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 371
Hsp92II CATG 4 cut(s) 278, 811, 886, 1025
HspAI GCGC 5 cut(s) 84, 91, 142, 371, 1017
KasI GGCGCC 1 cut(s) 370
Kzo9I GATC 4 cut(s) 154, 193, 345, 462
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 11, 595
Lsp1109I GCAGC 4 cut(s) 118, 124, 151, 346
MaeII ACGT 1 cut(s) 129
MalI GATC 4 cut(s) 156, 195, 347, 464
MbiI CCGCTC 1 cut(s) 598
MboI GATC 4 cut(s) 154, 193, 345, 462
MflI RGATCY 2 cut(s) 154, 462
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 4 cut(s) 499, 529, 719, 731
MluNI TGGCCA 1 cut(s) 309
Mly113I GGCGCC 1 cut(s) 371
MlyI GAGTC 1 cut(s) 212
Mox20I TGGCCA 1 cut(s) 309
MroXI GAANNNNTTC 2 cut(s) 248, 914
MscI TGGCCA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 971
Msp20I TGGCCA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 6 cut(s) 28, 116, 122, 176, 338, 950
MspR9I CCNGG 3 cut(s) 28, 176, 950
MvnI CGCG 3 cut(s) 84, 93, 693
MwoI GCNNNNNNNGC 9 cut(s) 32, 83, 90, 112, 334, 340, 368, 379, 442
NarI GGCGCC 1 cut(s) 371
NciI CCSGG 3 cut(s) 28, 176, 950
NdeII GATC 4 cut(s) 154, 193, 345, 462
NlaIII CATG 4 cut(s) 278, 811, 886, 1025
NlaIV GGNNCC 6 cut(s) 13, 120, 184, 372, 464, 891
NmeAIII GCCGAG 1 cut(s) 355
NspV TTCGAA 2 cut(s) 252, 527
OliI CACNNNNGTG 1 cut(s) 971
PaeR7I CTCGAG 1 cut(s) 239
PceI AGGCCT 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 320
PdmI GAANNNNTTC 2 cut(s) 248, 914
PfeI GAWTC 5 cut(s) 235, 279, 400, 524, 850
PflFI GACNNNGTC 1 cut(s) 322
PleI GAGTC 1 cut(s) 211
PluTI GGCGCC 1 cut(s) 374
PpsI GAGTC 1 cut(s) 211
Ppu21I YACGTR 1 cut(s) 130
PpuMI RGGWCCY 1 cut(s) 889
PsiI TTATAA 1 cut(s) 939
Psp5II RGGWCCY 1 cut(s) 889
PspFI CCCAGC 2 cut(s) 550, 572
PspN4I GGNNCC 6 cut(s) 13, 120, 184, 372, 464, 891
PspPI GGNCC 3 cut(s) 25, 405, 889
PspPPI RGGWCCY 1 cut(s) 889
PsuI RGATCY 2 cut(s) 154, 462
PsyI GACNNNGTC 1 cut(s) 322
RsaI GTAC 4 cut(s) 559, 667, 717, 752
RsaNI GTAC 4 cut(s) 558, 666, 716, 751
RseI CAYNNNNRTG 1 cut(s) 971
Rsr2I CGGWCCG 1 cut(s) 405
RsrII CGGWCCG 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 129
Sau3AI GATC 4 cut(s) 154, 193, 345, 462
Sau96I GGNCC 3 cut(s) 25, 405, 889
ScaI AGTACT 1 cut(s) 667
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 3 cut(s) 28, 176, 950
SetI ASST 8 cut(s) 132, 150, 303, 323, 744, 765, 831, 882
SfoI GGCGCC 1 cut(s) 372
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 2 cut(s) 252, 527
SinI GGWCC 2 cut(s) 405, 889
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 971
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SnaBI TACGTA 1 cut(s) 130
Sse9I AATT 4 cut(s) 499, 529, 719, 731
SseBI AGGCCT 1 cut(s) 101
SspDI GGCGCC 1 cut(s) 370
StuI AGGCCT 1 cut(s) 101
StyD4I CCNGG 3 cut(s) 26, 174, 948
TaaI ACNGT 2 cut(s) 670, 711
TaiI ACGT 1 cut(s) 132
TaqI TCGA 8 cut(s) 233, 240, 252, 386, 527, 723, 744, 853
TaqII GACCGA 1 cut(s) 393
TasI AATT 4 cut(s) 499, 529, 719, 731
TatI WGTACW 4 cut(s) 557, 665, 715, 750
TauI GCSGC 8 cut(s) 38, 41, 56, 112, 170, 382, 538, 700
TfiI GAWTC 5 cut(s) 235, 279, 400, 524, 850
TscAI CASTG 1 cut(s) 714
TseI GCWGC 4 cut(s) 106, 112, 139, 334
TspDTI ATGAA 7 cut(s) 263, 464, 602, 620, 650, 796, 998
TspGWI ACGGA 4 cut(s) 59, 329, 397, 1026
TspRI CASTG 1 cut(s) 714
Tth111I GACNNNGTC 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 405, 889
XapI RAATTY 3 cut(s) 499, 529, 731
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 2 cut(s) 248, 914
ZrmI AGTACT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.