Rw3G003070

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
2726410 .. 2727441
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G003070.1

Sequence Viewer

Length: 1032 bp
ATGAGGAAAGGAGCCAAGAGAAAGGCCCGGCCGGCGGCGACGGAGGAAGCCGCCACCAAGCCCAAAGCCACCGCTACACGCGCCAAGCGCGTCAAGGCCTCGCAGCCGCAGCCGGAACCGGAATACGTAGAAGAGCAGCGCAACCTTCAAGATCTATGGAAGGCGGCGTTCCCGGTAGGCACCGAGTGGGATCGGCTGGAGTCAATTTACCAATACGACTGGGATTTCTCGAATCTCGAGAAGGAGTTTGAAGAAGAAGGAGGCAAGTTTCATGGAATCGGGGACAACAAAGTCTACCTCTTCGGCCAGACGGAGACCTCGTCGCCGTCGCAGCCGGTGCTGATCCCGACGCTGGTGGCCGTCGTGGCGCCGCGTCCGCCGTCGATGGAGATAGGGATTCGGTCCGTCCAGAGAGAAGATAAGGAGATAGTGCCGATGAGGCAGATGAAGATGGATTGGATCCCTTACATTCCTCTGGAGGAGAGAGAAGGGTGGAATTCCGAAAGGGCGAAGAAGTCCGATTCGAATTTGCCGCAGATTTTTGTGCTGGGGTGTACTCAGAGGAAGGCTGGGTTGAAGCAGATGAAGGAGGAGCGGTGGATGAAGTTCCAGTATTGTATGCCGTATTTGATGAACCCGAACGAGGAGGAGAAAGAGCAGAGTACTGTGGTGGATATACTCTTTCCCCGCGAGCCGCAAGCACCACTGTTTGTACAATTCGATTGGGAATTTGATGAGGTCGAGGAGTACACCGATGAGCTGATAAAGGCGGAGGAGTTGAGTGAGGATAAGAAGGAGGCGTTCATGGAGTTTGTGAGGGAGGAGGTGAAGAAAGCGAAGAAGAAGATTCGAGAGGAGAGGGAAGCGAAGAAGAAGCTCATGGAGGACCCTAAGTATCAGGAGGCGAAAATGTTCTATGAGAATATGAGGCTTTATAAGATTTACCCGGTGCAAACGCCGAACACTCCTGTGATAGAGATGAAGTCTAAGTATATCAACTACTACTACGGAAGCGCCCATGAGATTATTTGA

Protein Analysis

343

Amino Acids

40.52

Weight (kDa)

5.49

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000661)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10010
fragaria_vesca FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
AasI GACNNNNNNGTC 1 cut(s) 290
AccB1I GGYRCC 2 cut(s) 179, 367
AccBSI CCGCTC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 294
AccII CGCG 4 cut(s) 81, 90, 373, 690
AclWI GGATC 4 cut(s) 198, 337, 454, 467
AcoI YGGCCR 3 cut(s) 29, 304, 357
AcsI RAATTY 3 cut(s) 496, 526, 728
AcyI GRCGYC 1 cut(s) 368
AdeI CACNNNGTG 1 cut(s) 186
AfaI GTAC 4 cut(s) 556, 664, 714, 749
AfiI CCNNNNNNNGG 3 cut(s) 34, 352, 643
AgsI TTSAA 3 cut(s) 149, 251, 577
AleI CACNNNNGTG 1 cut(s) 968
AluBI AGCT 2 cut(s) 760, 877
AluI AGCT 2 cut(s) 760, 877
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 4 cut(s) 198, 337, 454, 467
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 5 cut(s) 24, 29, 96, 304, 357
ApeKI GCWGC 4 cut(s) 103, 109, 136, 331
ApoI RAATTY 3 cut(s) 496, 526, 728
Asp700I GAANNNNTTC 1 cut(s) 911
AspLEI GCGC 5 cut(s) 83, 90, 141, 370, 1016
AspS9I GGNCC 3 cut(s) 25, 402, 886
AsuC2I CCSGG 3 cut(s) 28, 173, 947
AsuHPI GGTGA 1 cut(s) 838
AsuII TTCGAA 1 cut(s) 524
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 402, 886
BamHI GGATCC 1 cut(s) 459
BanI GGYRCC 2 cut(s) 179, 367
BbvI GCAGC 4 cut(s) 115, 121, 148, 343
BccI CCATC 2 cut(s) 379, 445
BceAI ACGGC 4 cut(s) 310, 344, 364, 607
BcnI CCSGG 3 cut(s) 28, 173, 947
BcoDI GTCTC 1 cut(s) 308
BfoI RGCGCY 2 cut(s) 371, 1017
BglI GCCNNNNNGGC 3 cut(s) 32, 365, 439
BglII AGATCT 1 cut(s) 151
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 3 cut(s) 28, 173, 947
Bme18I GGWCC 2 cut(s) 402, 886
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 25, 402, 886
BmiI GGNNCC 6 cut(s) 13, 117, 181, 369, 461, 888
BmrFI CCNGG 3 cut(s) 28, 173, 947
BmrI ACTGGG 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 229
BpmI CTGGAG 2 cut(s) 218, 497
Bpu14I TTCGAA 1 cut(s) 524
BpuMI CCSGG 3 cut(s) 28, 173, 947
BsaAI YACGTR 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 368
BsaI GGTCTC 1 cut(s) 308
BsaWI WCCGGW 1 cut(s) 118
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 581, 611
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 352, 643
Bse118I RCCGGY 2 cut(s) 31, 334
Bse1I ACTGG 2 cut(s) 224, 610
BseGI GGATG 1 cut(s) 606
BseLI CCNNNNNNNGG 3 cut(s) 34, 352, 643
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 2 cut(s) 224, 610
BseRI GAGGAG 8 cut(s) 494, 605, 659, 662, 758, 788, 836, 869
BseX3I CGGCCG 1 cut(s) 29
BseXI GCAGC 4 cut(s) 115, 121, 148, 343
BseYI CCCAGC 2 cut(s) 547, 569
Bsh1236I CGCG 4 cut(s) 81, 90, 373, 690
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 5 cut(s) 26, 31, 98, 306, 359
BshNI GGYRCC 2 cut(s) 179, 367
BsiEI CGRYCG 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 7 cut(s) 28, 32, 113, 119, 173, 335, 947
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 3 cut(s) 34, 352, 643
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 5 cut(s) 26, 31, 98, 306, 359
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 524
Bsp1407I TGTACA 1 cut(s) 712
Bsp143I GATC 4 cut(s) 151, 190, 342, 459
BspANI GGCC 5 cut(s) 26, 31, 98, 306, 359
BspCNI CTCAG 1 cut(s) 571
BspFNI CGCG 4 cut(s) 81, 90, 373, 690
BspLI GGNNCC 6 cut(s) 13, 117, 181, 369, 461, 888
BspPI GGATC 4 cut(s) 198, 337, 454, 467
BspQI GCTCTTC 1 cut(s) 126
BspT104I TTCGAA 1 cut(s) 524
BspT107I GGYRCC 2 cut(s) 179, 367
BspTNI GGTCTC 1 cut(s) 308
BsrBI CCGCTC 1 cut(s) 595
BsrFI RCCGGY 2 cut(s) 31, 334
BsrGI TGTACA 1 cut(s) 712
BsrI ACTGG 2 cut(s) 224, 610
BssAI RCCGGY 2 cut(s) 31, 334
BssMI GATC 4 cut(s) 151, 190, 342, 459
BssNI GRCGYC 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 667, 708
Bst6I CTCTTC 2 cut(s) 126, 305
BstACI GRCGYC 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 337
BstAUI TGTACA 1 cut(s) 712
BstBAI YACGTR 1 cut(s) 127
BstBI TTCGAA 1 cut(s) 524
BstC8I GCNNGC 3 cut(s) 33, 692, 699
BstDEI CTNAG 3 cut(s) 558, 891, 987
BstF5I GGATG 1 cut(s) 606
BstFNI CGCG 4 cut(s) 81, 90, 373, 690
BstH2I RGCGCY 2 cut(s) 371, 1017
BstHHI GCGC 5 cut(s) 83, 90, 141, 370, 1016
BstKTI GATC 4 cut(s) 154, 193, 345, 462
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 4 cut(s) 151, 190, 342, 459
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 9 cut(s) 32, 80, 87, 109, 331, 337, 365, 376, 439
BstSCI CCNGG 3 cut(s) 26, 171, 945
BstSNI TACGTA 1 cut(s) 127
BstUI CGCG 4 cut(s) 81, 90, 373, 690
BstV1I GCAGC 4 cut(s) 115, 121, 148, 343
BstX2I RGATCY 2 cut(s) 151, 459
BstYI RGATCY 2 cut(s) 151, 459
BstZI CGGCCG 1 cut(s) 29
BsuRI GGCC 5 cut(s) 26, 31, 98, 306, 359
BtsCI GGATG 1 cut(s) 606
BtsIMutI CAGTG 1 cut(s) 704
Cac8I GCNNGC 3 cut(s) 33, 692, 699
CfoI GCGC 5 cut(s) 83, 90, 141, 370, 1016
Cfr10I RCCGGY 2 cut(s) 31, 334
Cfr13I GGNCC 3 cut(s) 25, 402, 886
CpoI CGGWCCG 1 cut(s) 402
CseI GACGC 3 cut(s) 79, 358, 362
Csp6I GTAC 4 cut(s) 555, 663, 713, 748
CspI CGGWCCG 1 cut(s) 402
CviAII CATG 4 cut(s) 272, 805, 880, 1019
CviQI GTAC 4 cut(s) 555, 663, 713, 748
DdeI CTNAG 3 cut(s) 558, 891, 987
DinI GGCGCC 1 cut(s) 369
DpnI GATC 4 cut(s) 153, 192, 344, 461
DpnII GATC 4 cut(s) 151, 190, 342, 459
DraIII CACNNNGTG 1 cut(s) 186
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
EaeI YGGCCR 3 cut(s) 29, 304, 357
EagI CGGCCG 1 cut(s) 29
Eam1104I CTCTTC 2 cut(s) 126, 305
EarI CTCTTC 2 cut(s) 126, 305
EciI GGCGGA 2 cut(s) 366, 785
EclXI CGGCCG 1 cut(s) 29
Eco105I TACGTA 1 cut(s) 127
Eco147I AGGCCT 1 cut(s) 98
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 402, 886
Eco52I CGGCCG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 886
EcoRI GAATTC 1 cut(s) 496
EgeI GGCGCC 1 cut(s) 369
EheI GGCGCC 1 cut(s) 369
FaeI CATG 4 cut(s) 275, 808, 883, 1022
FaqI GGGAC 1 cut(s) 296
FatI CATG 4 cut(s) 271, 804, 879, 1018
FauI CCCGC 1 cut(s) 695
FblI GTMKAC 1 cut(s) 294
FokI GGATG 1 cut(s) 613
GlaI GCGC 5 cut(s) 82, 89, 140, 369, 1015
GsaI CCCAGC 2 cut(s) 551, 573
GsuI CTGGAG 2 cut(s) 218, 497
HaeII RGCGCY 2 cut(s) 371, 1017
HaeIII GGCC 5 cut(s) 26, 31, 98, 306, 359
HapII CCGG 7 cut(s) 28, 32, 113, 119, 173, 335, 947
HgaI GACGC 3 cut(s) 79, 358, 362
HhaI GCGC 5 cut(s) 83, 90, 141, 370, 1016
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 4 cut(s) 275, 808, 883, 1022
Hin6I GCGC 5 cut(s) 81, 88, 139, 368, 1014
HinP1I GCGC 5 cut(s) 81, 88, 139, 368, 1014
HinfI GANTC 6 cut(s) 200, 232, 276, 397, 521, 847
HpaII CCGG 7 cut(s) 28, 32, 113, 119, 173, 335, 947
HphI GGTGA 1 cut(s) 838
Hpy166II GTNNAC 3 cut(s) 295, 555, 750
Hpy188I TCNGA 3 cut(s) 502, 520, 561
Hpy188III TCNNGA 9 cut(s) 149, 229, 236, 238, 346, 409, 476, 851, 899
Hpy8I GTNNAC 3 cut(s) 295, 555, 750
Hpy99I CGWCG 6 cut(s) 43, 325, 331, 352, 365, 385
HpyAV CCTTC 8 cut(s) 154, 155, 235, 251, 482, 559, 580, 787
HpyCH4III ACNGT 2 cut(s) 667, 708
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 952
HpyF10VI GCNNNNNNNGC 9 cut(s) 32, 80, 87, 109, 331, 337, 365, 376, 439
HpyF3I CTNAG 3 cut(s) 558, 891, 987
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 4 cut(s) 275, 808, 883, 1022
HspAI GCGC 5 cut(s) 81, 88, 139, 368, 1014
KasI GGCGCC 1 cut(s) 367
KroI GCCGGC 1 cut(s) 31
KroNI GCCGGC 1 cut(s) 33
Kzo9I GATC 4 cut(s) 151, 190, 342, 459
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 11, 592
Lsp1109I GCAGC 4 cut(s) 115, 121, 148, 343
MaeII ACGT 1 cut(s) 126
MalI GATC 4 cut(s) 153, 192, 344, 461
MbiI CCGCTC 1 cut(s) 595
MboI GATC 4 cut(s) 151, 190, 342, 459
MflI RGATCY 2 cut(s) 151, 459
MluCI AATT 5 cut(s) 204, 496, 526, 716, 728
Mly113I GGCGCC 1 cut(s) 368
MlyI GAGTC 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 911
MslI CAYNNNNRTG 1 cut(s) 968
MspI CCGG 7 cut(s) 28, 32, 113, 119, 173, 335, 947
MspR9I CCNGG 3 cut(s) 28, 173, 947
MvnI CGCG 4 cut(s) 81, 90, 373, 690
MwoI GCNNNNNNNGC 9 cut(s) 32, 80, 87, 109, 331, 337, 365, 376, 439
NaeI GCCGGC 1 cut(s) 33
NarI GGCGCC 1 cut(s) 368
NciI CCSGG 3 cut(s) 28, 173, 947
NdeII GATC 4 cut(s) 151, 190, 342, 459
NgoMIV GCCGGC 1 cut(s) 31
NlaIII CATG 4 cut(s) 275, 808, 883, 1022
NlaIV GGNNCC 6 cut(s) 13, 117, 181, 369, 461, 888
NspV TTCGAA 1 cut(s) 524
OliI CACNNNNGTG 1 cut(s) 968
PaeR7I CTCGAG 1 cut(s) 236
PceI AGGCCT 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PdiI GCCGGC 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 911
PfeI GAWTC 5 cut(s) 232, 276, 397, 521, 847
PflFI GACNNNGTC 1 cut(s) 319
PleI GAGTC 1 cut(s) 208
PluTI GGCGCC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 886
PsiI TTATAA 1 cut(s) 936
Psp5II RGGWCCY 1 cut(s) 886
PspFI CCCAGC 2 cut(s) 547, 569
PspN4I GGNNCC 6 cut(s) 13, 117, 181, 369, 461, 888
PspPI GGNCC 3 cut(s) 25, 402, 886
PspPPI RGGWCCY 1 cut(s) 886
PsuI RGATCY 2 cut(s) 151, 459
PsyI GACNNNGTC 1 cut(s) 319
RsaI GTAC 4 cut(s) 556, 664, 714, 749
RsaNI GTAC 4 cut(s) 555, 663, 713, 748
RseI CAYNNNNRTG 1 cut(s) 968
Rsr2I CGGWCCG 1 cut(s) 402
RsrII CGGWCCG 1 cut(s) 402
SapI GCTCTTC 1 cut(s) 126
Sau3AI GATC 4 cut(s) 151, 190, 342, 459
Sau96I GGNCC 3 cut(s) 25, 402, 886
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 28, 173, 947
SetI ASST 8 cut(s) 129, 147, 300, 320, 741, 762, 828, 879
SfoI GGCGCC 1 cut(s) 369
Sfr274I CTCGAG 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 524
SinI GGWCC 2 cut(s) 402, 886
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 968
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SnaBI TACGTA 1 cut(s) 127
Sse9I AATT 5 cut(s) 204, 496, 526, 716, 728
SseBI AGGCCT 1 cut(s) 98
SspDI GGCGCC 1 cut(s) 367
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 3 cut(s) 26, 171, 945
TaaI ACNGT 2 cut(s) 667, 708
TaiI ACGT 1 cut(s) 129
TaqI TCGA 7 cut(s) 230, 237, 383, 524, 720, 741, 850
TaqII GACCGA 1 cut(s) 390
TasI AATT 5 cut(s) 204, 496, 526, 716, 728
TatI WGTACW 4 cut(s) 554, 662, 712, 747
TauI GCSGC 7 cut(s) 38, 53, 109, 167, 373, 535, 697
TfiI GAWTC 5 cut(s) 232, 276, 397, 521, 847
TscAI CASTG 1 cut(s) 711
TseI GCWGC 4 cut(s) 103, 109, 136, 331
TspDTI ATGAA 7 cut(s) 260, 461, 599, 617, 647, 793, 995
TspGWI ACGGA 4 cut(s) 56, 326, 394, 1023
TspRI CASTG 1 cut(s) 711
Tth111I GACNNNGTC 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 402, 886
XapI RAATTY 3 cut(s) 496, 526, 728
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 911
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.