Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000661

Physical Location & Seq

Genomic Coordinates Reverse (-)

2501155 .. 2502063

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG038200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAAGGCTGCCTTTCCTGCTGGGACACCGAGGTCTGTTTTGGACTCGCCACTCATTCTTTCAAGTGGGGTTTCTCGAATATTGAAGAAGCACTCGAAGGAGGAGGAAAGCTGTACAAGAAGAGCAGCAGAGTTTATCGATTCGGCTCCACGGAGGAGGCCATGGTTAAAAGAGAAGTGGTTGCTTTGATCCCTGTGTTGGTGGCCGTTGTTTCGGCTTCTCCGCTTTCCAATGAGCTTGGACTTGTTTTAAGTGAGGGAAAAGTGGAAGAGATAATTCCGATGAAGAGATTGAAGATAGACTGGGCTCCATATATTCCTTTGGACAAGAGATTAGACAAAGAAGGTCCTGAAATCTTTGTCTTGAGCTGCAAGCAAAGAAGGGCTGCTCTCAAACACAAAAATGTCAAGGGAAGCCGTGATCTATTGAAGTTTGAATACGCCGTGCCTTATTTGGATCCGGCGGAAGTAATGTGTCATGAAGTTCATGTTCAGGAGGAGTACTTTAGTGCTAATGATGACGAGCTGGAGGAGTTGTACTTCAGTGGTGAAGATGAGGATCAGGTAATGGAGGATGATGATGAAAAGAATGTCAAGGTGGAAGAAGAAGCACAGGGGAGAAAATATTGGGGTTCGGGAACGCGGCTGGAGAAGAAGTGTGGAGAATATGATCAAGATGAGGATTTACAAGTTCTATCCGATACTACTGACATATCCGAGTTTAAGAATGCATTTGTCAACAGGAACTATGGCACCGCTCATGAGATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006950 GO:0007088 GO:0007346 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009893 GO:0010286 GO:0010369 GO:0010468 GO:0010564 GO:0010604 GO:0010628 GO:0019222 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051726 GO:0051783 GO:0051983 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0070013 GO:0080134 GO:0080135 GO:0098687 GO:1900034 GO:1901651

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.3

Weight (kDa)

4.71

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10010
fragaria_vesca	FvH4_6g03222 FvH4_6g03560 FvH4_6g03561 FvH4_6g03563 FvH4_6g03590 FvH4_6g03590 FvH4_6g09260
malus_domestica	MD04G1220200.v1.1 MD12G1240700.v1.1 MD15G1083500.v1.1
prunus_persica	Prupe.1G436000_v2.0.a1 Prupe.6G174800_v2.0.a1 Prupe.6G339200_v2.0.a1
pyrus_communis	pycom08g08260 pycom15g07800 pycom15g07810
rosa_chinensis	RchiOBHm_Chr3g0451551 RchiOBHm_Chr3g0451591 RchiOBHm_Chr3g0451621 RchiOBHm_Chr3g0452131 RchiOBHm_Chr3g0459621
rosa_laevigata	RLG00000025074 RLG00000025077 RLG00000025626 RLG00000029505 RLG00000035382 RLG00000035384
rosa_multiflora	Rmu_co8173672.1_g000001 Rmu_sc0000240.1_g000011 Rmu_sc0000240.1_g000014 Rmu_sc0004924.1_g000012 Rmu_sc0004924.1_g000020 Rmu_sc0004924.1_g000023 Rmu_sc0004924.1_g000025 Rmu_sc0004924.1_g000034 Rmu_sc0004924.1_g000035 Rmu_sc0009360.1_g000006 Rmu_sc0009360.1_g000008 Rmu_sc0009360.1_g000014 Rmu_sc0009360.1_g000047 Rmu_sc0011887.1_g000001 Rmu_sc0015119.1_g000001 Rmu_sc0023706.1_g000002
rosa_roxburghii	Rroxscaffold_164G00436050 Rroxscaffold_164G00436390 Rroxscaffold_164G00436450 Rroxscaffold_164G00436460 Rroxscaffold_4G00317080 Rroxscaffold_4G00317090 Rroxscaffold_6G00420140 Rroxscaffold_6G00428920
rosa_rugosa	Rorug02G0634200 Rorug02G0634500 Rorug02G0634700 Rorug02G0635400 Rorug02G0638500 Rorug03G0036600 Rorug03G0036700
rosa_samantha	Rh1BG103700 Rh1BG103800 Rh3AG040400 Rh3BG037900 Rh3BG038200 Rh3BG041900 Rh3BG097900 Rh3CG036600 Rh3CG040300 Rh3DG037300 Rh3DG037500 Rh3DG041200 Rh3DG099300
rosa_wichuraiana	Rw0G013830 Rw0G017580 Rw0G017600 Rw3G003070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	752
AccBSI	CCGCTC	1 cut(s)	758
AccII	CGCG	1 cut(s)	643
AciI	CCGC	4 cut(s)	224, 464, 643, 756
AclWI	GGATC	4 cut(s)	184, 452, 465, 567
AcoI	YGGCCR	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	526
AfaI	GTAC	3 cut(s)	116, 503, 539
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	5 cut(s)	64, 86, 295, 430, 437
AluBI	AGCT	4 cut(s)	112, 238, 369, 526
AluI	AGCT	4 cut(s)	112, 238, 369, 526
AlwI	GGATC	4 cut(s)	184, 452, 465, 567
AoxI	GGCC	2 cut(s)	159, 204
ApeKI	GCWGC	4 cut(s)	9, 126, 369, 386
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	422, 454
BbvI	GCAGC	3 cut(s)	138, 356, 373
BceAI	ACGGC	3 cut(s)	191, 402, 428
BclI	TGATCA	1 cut(s)	670
BisI	GCNGC	5 cut(s)	10, 127, 370, 387, 644
BlsI	GCNGC	5 cut(s)	11, 128, 371, 388, 645
BmcAI	AGTACT	1 cut(s)	503
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	4 cut(s)	148, 309, 459, 754
BmrI	ACTGGG	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	313
BpmI	CTGGAG	2 cut(s)	548, 668
BpuEI	CTTGAG	1 cut(s)	385
Bsa29I	ATCGAT	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	30, 150, 162
BsaXI	ACNNNNNCTCC	4 cut(s)	521, 551, 641, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	308
Bse8I	GATNNNNATC	1 cut(s)	558
BseCI	ATCGAT	1 cut(s)	139
BseDI	CCNNGG	3 cut(s)	30, 150, 162
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	1 cut(s)	558
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	4 cut(s)	117, 170, 512, 545
BseXI	GCAGC	3 cut(s)	138, 356, 373
BseYI	CCCAGC	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	643
BshFI	GGCC	2 cut(s)	161, 206
BshNI	GGYRCC	1 cut(s)	752
BshVI	ATCGAT	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	2 cut(s)	161, 206
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	5 cut(s)	189, 421, 457, 559, 670
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	4 cut(s)	224, 464, 643, 756
BspANI	GGCC	2 cut(s)	161, 206
BspDI	ATCGAT	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	643
BspHI	TCATGA	2 cut(s)	478, 760
BspLI	GGNNCC	4 cut(s)	148, 309, 459, 754
BspPI	GGATC	4 cut(s)	184, 452, 465, 567
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	752
BsrBI	CCGCTC	1 cut(s)	758
BsrGI	TGTACA	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	3 cut(s)	30, 150, 162
BssMI	GATC	5 cut(s)	189, 421, 457, 559, 670
BssT1I	CCWWGG	1 cut(s)	162
Bst6I	CTCTTC	3 cut(s)	116, 264, 281
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	374
BstDSI	CCRYGG	2 cut(s)	150, 162
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	1 cut(s)	643
BstKTI	GATC	5 cut(s)	192, 424, 460, 562, 673
BstMBI	GATC	5 cut(s)	189, 421, 457, 559, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstUI	CGCG	1 cut(s)	643
BstV1I	GCAGC	3 cut(s)	138, 356, 373
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
Bsu15I	ATCGAT	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	161, 206
BsuTUI	ATCGAT	1 cut(s)	139
BtgI	CCRYGG	2 cut(s)	150, 162
BtsCI	GGATG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	550
Cac8I	GCNNGC	1 cut(s)	374
CciI	TCATGA	2 cut(s)	478, 760
Cfr13I	GGNCC	1 cut(s)	347
ClaI	ATCGAT	1 cut(s)	139
Csp6I	GTAC	3 cut(s)	115, 502, 538
CviAII	CATG	4 cut(s)	163, 479, 488, 761
CviQI	GTAC	3 cut(s)	115, 502, 538
DpnI	GATC	5 cut(s)	191, 423, 459, 561, 672
DpnII	GATC	5 cut(s)	189, 421, 457, 559, 670
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	3 cut(s)	116, 264, 281
EarI	CTCTTC	3 cut(s)	116, 264, 281
EciI	GGCGGA	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	347
Eco57I	CTGAAG	1 cut(s)	526
EcoO109I	RGGNCCY	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	4 cut(s)	166, 482, 491, 764
FaiI	YATR	9 cut(s)	164, 313, 315, 480, 489, 669, 713, 750, 762
FalI	AAGNNNNNCTT	1 cut(s)	29
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	4 cut(s)	162, 478, 487, 760
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	5 cut(s)	10, 127, 370, 387, 644
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	5 cut(s)	10, 127, 370, 387, 644
GluI	GCNGC	5 cut(s)	10, 127, 370, 387, 644
GsaI	CCCAGC	1 cut(s)	25
GsuI	CTGGAG	2 cut(s)	548, 668
HaeIII	GGCC	2 cut(s)	161, 206
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	4 cut(s)	166, 482, 491, 764
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	3 cut(s)	45, 141, 766
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	739
Hpy188I	TCNGA	3 cut(s)	282, 700, 718
Hpy188III	TCNNGA	8 cut(s)	76, 350, 364, 479, 494, 636, 674, 761
Hpy8I	GTNNAC	1 cut(s)	739
HpyAV	CCTTC	3 cut(s)	92, 338, 375
HpyCH4V	TGCA	2 cut(s)	372, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	166, 482, 491, 764
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	5 cut(s)	189, 421, 457, 559, 670
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	152, 313
Lsp1109I	GCAGC	3 cut(s)	138, 356, 373
MalI	GATC	5 cut(s)	191, 423, 459, 561, 672
MbiI	CCGCTC	1 cut(s)	758
MboI	GATC	5 cut(s)	189, 421, 457, 559, 670
MboII	GAAGA	9 cut(s)	98, 133, 281, 298, 307, 563, 614, 617, 664
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	39
Mph1103I	ATGCAT	1 cut(s)	733
MseI	TTAA	3 cut(s)	168, 251, 723
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	733
MvnI	CGCG	1 cut(s)	643
MwoI	GCNNNNNNNGC	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	5 cut(s)	189, 421, 457, 559, 670
NlaIII	CATG	4 cut(s)	166, 482, 491, 764
NlaIV	GGNNCC	4 cut(s)	148, 309, 459, 754
NsiI	ATGCAT	1 cut(s)	733
PagI	TCATGA	2 cut(s)	478, 760
PciSI	GCTCTTC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	141, 766
PkrI	GCNGC	5 cut(s)	11, 128, 371, 388, 645
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	21
PspN4I	GGNNCC	4 cut(s)	148, 309, 459, 754
PspPI	GGNCC	1 cut(s)	347
PspPPI	RGGWCCY	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	3 cut(s)	116, 503, 539
RsaNI	GTAC	3 cut(s)	115, 502, 538
RseI	CAYNNNNRTG	1 cut(s)	402
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	168, 251, 723
SatI	GCNGC	5 cut(s)	10, 127, 370, 387, 644
Sau3AI	GATC	5 cut(s)	189, 421, 457, 559, 670
Sau96I	GGNCC	1 cut(s)	347
ScaI	AGTACT	1 cut(s)	503
SchI	GAGTC	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	8 cut(s)	36, 114, 240, 349, 371, 528, 567, 600
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	4 cut(s)	224, 464, 643, 756
SspI	AATATT	2 cut(s)	82, 626
StyI	CCWWGG	1 cut(s)	162
TaqI	TCGA	3 cut(s)	77, 96, 139
TasI	AATT	1 cut(s)	276
TatI	WGTACW	3 cut(s)	114, 501, 537
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	2 cut(s)	141, 766
Tru1I	TTAA	3 cut(s)	168, 251, 723
Tru9I	TTAA	3 cut(s)	168, 251, 723
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	4 cut(s)	9, 126, 369, 386
TspDTI	ATGAA	4 cut(s)	299, 476, 495, 597
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.